Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

30240895 .. 30241568

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG159600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTAATACTCAGACCTCGAATCGTGAAAAAGGCCATTGTTGCGGTGGACATTGATAGCACTAAGAAAATCTCTGATACTTTTGGGCAGAGGACTTCAATTTACAGAGGAGTTACTAGACATCGTTGGACGGGTAGATATGAAGCGCATCTAATCTTAACGGTCAACTTACGGTCCCCGGCGCCACCCTCGTCCTCCTCCTCCTGCCGCACCAGATCCCACCCCTCCGGCCACCGCACCACCAGCTCACCTCATACTTCCTCGTATTCACGGTGGCCACACCGCTACTTCATCATCTTCGCCACCATTCCAATTCAATTGGATCAAATTAGAAAAACCCAACCCAAATTTGGTCTGGAGATTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

123

Amino Acids

14.2

Weight (kDa)

11.33

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	4 cut(s)	44, 208, 235, 283
AclWI	GGATC	2 cut(s)	210, 330
AcoI	YGGCCR	2 cut(s)	229, 275
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	99, 317
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
AlwI	GGATC	2 cut(s)	210, 330
AoxI	GGCC	3 cut(s)	33, 229, 275
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	148, 184
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	179
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	176, 183
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	123, 187, 190
BshFI	GGCC	3 cut(s)	35, 231, 277
BshNI	GGYRCC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	179, 228
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	35, 231, 277
Bsp143I	GATC	2 cut(s)	215, 322
BspACI	CCGC	4 cut(s)	44, 208, 235, 283
BspANI	GGCC	3 cut(s)	35, 231, 277
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	176, 183
BspPI	GGATC	2 cut(s)	210, 330
BspT107I	GGYRCC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	215, 322
BssNI	GRCGYC	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	163, 174, 273
BstACI	GRCGYC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	11, 63
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	148, 184
BstKTI	GATC	2 cut(s)	218, 325
BstMBI	GATC	2 cut(s)	215, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 243
BstSCI	CCNGG	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	35, 231, 277
CfoI	GCGC	2 cut(s)	148, 184
Cfr13I	GGNCC	1 cut(s)	174
CviJI	RGCY	4 cut(s)	35, 231, 246, 277
CviKI_1	RGCY	4 cut(s)	35, 231, 246, 277
DdeI	CTNAG	2 cut(s)	11, 63
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	2 cut(s)	217, 324
DpnII	GATC	2 cut(s)	215, 322
EaeI	YGGCCR	2 cut(s)	229, 275
Eco47I	GGWCC	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaiI	YATR	2 cut(s)	141, 255
FaqI	GGGAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	147, 183
GluI	GCNGC	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	35, 231, 277
HapII	CCGG	2 cut(s)	179, 228
HhaI	GCGC	2 cut(s)	148, 184
Hin1I	GRCGYC	1 cut(s)	182
Hin6I	GCGC	2 cut(s)	146, 182
HinP1I	GCGC	2 cut(s)	146, 182
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	179, 228
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	2 cut(s)	49, 166
Hpy188I	TCNGA	2 cut(s)	14, 76
Hpy188III	TCNNGA	2 cut(s)	25, 356
Hpy8I	GTNNAC	2 cut(s)	49, 166
HpyCH4III	ACNGT	3 cut(s)	163, 174, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 243
HpyF3I	CTNAG	2 cut(s)	11, 63
Hsp92I	GRCGYC	1 cut(s)	182
HspAI	GCGC	2 cut(s)	146, 182
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	215, 322
LpnPI	CCDG	6 cut(s)	192, 217, 226, 241, 256, 341
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	217, 324
MboI	GATC	2 cut(s)	215, 322
MboII	GAAGA	1 cut(s)	289
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	5 cut(s)	99, 312, 317, 327, 347
MluNI	TGGCCA	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	277
MspI	CCGG	2 cut(s)	179, 228
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	41, 243
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	2 cut(s)	215, 322
NlaIV	GGNNCC	2 cut(s)	176, 183
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	209
PluTI	GGCGCC	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	176, 183
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	215, 322
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	3 cut(s)	19, 248, 253
SfaNI	GCATC	1 cut(s)	157
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	5 cut(s)	99, 312, 317, 327, 347
SsiI	CCGC	4 cut(s)	44, 208, 235, 283
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	163, 174, 273
TaqI	TCGA	1 cut(s)	19
TasI	AATT	5 cut(s)	99, 312, 317, 327, 347
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	156, 280
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	3 cut(s)	43, 347, 352
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.