Rh6DG253200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014873
Physical Location & Seq
Reverse (-)
44248293 .. 44248616
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG253200.1

Sequence Viewer

Length: 324 bp
ATGAGTGCCGAATCGTGGGAGACTGCGTCGAATTCACCGGAGGAGGAGGCCATGTCTGCTGCGGCGGCCGCGACATCGTCTTTATCAGAGGAGGAAGAGGTGGGGGACACTGATGAAACTCAAACCACCATCTCGTCATCGTCGTTGTCCTCTGAGGAAAACAGGCAAAATCTCTGGTTTCAGGCGGAGCTTAACCAAGTCCGTCTATTCCAAAGGGCCTTGAGACCCCTGTTTCAAACTGCCTACACCGACCGAGAGTACCTGGATGACATGTTCCTCTCCGGACACATCCGCGACGCCGGCCACTTCTGCATATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

4.16

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 71, 294
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 5 cut(s) 62, 65, 69, 185, 292
AcoI YGGCCR 2 cut(s) 66, 301
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 14, 217
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 4 cut(s) 48, 66, 216, 301
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 27, 309
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 14, 217
BisI GCNGC 4 cut(s) 60, 63, 66, 69
BlsI GCNGC 4 cut(s) 61, 64, 67, 70
Bme1390I CCNGG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 217
BsaWI WCCGGW 2 cut(s) 37, 281
BsaXI ACNNNNNCTCC 4 cut(s) 11, 38, 41, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 271, 288
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 3 cut(s) 56, 59, 104
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 71, 294
Bsh1285I CGRYCG 2 cut(s) 69, 253
BshFI GGCC 4 cut(s) 50, 68, 218, 303
BsiEI CGRYCG 2 cut(s) 69, 253
BsiSI CCGG 3 cut(s) 38, 282, 300
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 14, 217
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 4 cut(s) 50, 68, 218, 303
Bso31I GGTCTC 1 cut(s) 217
Bsp13I TCCGGA 1 cut(s) 281
BspACI CCGC 5 cut(s) 62, 65, 69, 185, 292
BspANI GGCC 4 cut(s) 50, 68, 218, 303
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 281
BspFNI CGCG 2 cut(s) 71, 294
BspTNI GGTCTC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 271, 288
BstFNI CGCG 2 cut(s) 71, 294
BstMAI GTCTC 2 cut(s) 14, 217
BstMCI CGRYCG 2 cut(s) 69, 253
BstMWI GCNNNNNNNGC 5 cut(s) 56, 65, 68, 300, 309
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 261
BstUI CGCG 2 cut(s) 71, 294
BstV1I GCAGC 1 cut(s) 46
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 4 cut(s) 50, 68, 218, 303
BtsCI GGATG 2 cut(s) 271, 288
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 301
CciNI GCGGCCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 2 cut(s) 15, 305
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 52, 271, 321
CviJI RGCY 5 cut(s) 50, 68, 190, 218, 303
CviKI_1 RGCY 5 cut(s) 50, 68, 190, 218, 303
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 66, 301
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 200
EclXI CGGCCG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 55, 274, 324
FaiI YATR 4 cut(s) 53, 272, 314, 322
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 51, 270, 320
Fnu4HI GCNGC 4 cut(s) 60, 63, 66, 69
FokI GGATG 2 cut(s) 275, 278
Fsp4HI GCNGC 4 cut(s) 60, 63, 66, 69
GluI GCNGC 4 cut(s) 60, 63, 66, 69
HaeIII GGCC 4 cut(s) 50, 68, 218, 303
HapII CCGG 3 cut(s) 38, 282, 300
HgaI GACGC 2 cut(s) 15, 305
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 3 cut(s) 55, 274, 324
HinfI GANTC 1 cut(s) 11
HpaII CCGG 3 cut(s) 38, 282, 300
HphI GGTGA 2 cut(s) 27, 309
Hpy188I TCNGA 2 cut(s) 88, 154
Hpy188III TCNNGA 1 cut(s) 282
Hpy99I CGWCG 3 cut(s) 31, 145, 299
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 65, 68, 300, 309
HpyF3I CTNAG 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 3 cut(s) 55, 274, 324
Kpn2I TCCGGA 1 cut(s) 281
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 9 cut(s) 51, 148, 160, 167, 242, 248, 275, 295, 313
Lsp1109I GCAGC 1 cut(s) 46
MboII GAAGA 1 cut(s) 107
MluCI AATT 1 cut(s) 31
MnlI CCTC 9 cut(s) 34, 37, 40, 82, 85, 91, 148, 160, 287
MroI TCCGGA 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 299
MseI TTAA 1 cut(s) 192
MspI CCGG 3 cut(s) 38, 282, 300
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 2 cut(s) 71, 294
MwoI GCNNNNNNNGC 5 cut(s) 56, 65, 68, 300, 309
NaeI GCCGGC 1 cut(s) 301
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 3 cut(s) 55, 274, 324
NotI GCGGCCGC 1 cut(s) 66
NspI RCATGY 1 cut(s) 274
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PdiI GCCGGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 11
PflFI GACNNNGTC 2 cut(s) 25, 76
PkrI GCNGC 4 cut(s) 61, 64, 67, 70
PscI ACATGT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspPI GGNCC 1 cut(s) 216
PsyI GACNNNGTC 2 cut(s) 25, 76
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 4 cut(s) 60, 63, 66, 69
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 263
SetI ASST 3 cut(s) 102, 192, 264
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 1 cut(s) 31
SsiI CCGC 5 cut(s) 62, 65, 69, 185, 292
StyD4I CCNGG 1 cut(s) 261
TaqI TCGA 1 cut(s) 29
TaqII GACCGA 1 cut(s) 267
TasI AATT 1 cut(s) 31
TauI GCSGC 3 cut(s) 65, 68, 71
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 2 cut(s) 25, 76
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.