Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

24581850 .. 24582206

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGATGCTTCTGGACGAGATCGTGCAATCGCTGGAGCTCAGGTTGAAGCTTATCAGGAAGCCCCAACCTTACGTCGACTCAAATCTCGACCCGGTTATGCTGGTGCCCGGCATCGCCTGCTCAGTCTTGAACGCCGGCTCAACGGTCAACTTACTCTCCCCGACGCCGCCCTCGTCCTCCTCTTCCTGCCGCACCAGATCTCACCCCTCCAACCGCACCACCAGGCTCACCTCGTACTTCCTCATATTCAGCGGCCGCCACGGCCGCCACTTCATCATCTTCACCACCATTCCGATTCAATTGAATCAAATCAGAAAAAGCCAACCCAAATTTTGTCTGAAGATTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

118

Amino Acids

13.34

Weight (kDa)

10.37

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	6 cut(s)	170, 193, 217, 255, 259, 268
AcoI	YGGCCR	2 cut(s)	256, 265
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	49, 133, 302, 307
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	40, 52
AluI	AGCT	2 cut(s)	40, 52
Alw21I	GWGCWC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	256, 265
ApoI	RAATTY	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	95, 111
AsuHPI	GGTGA	3 cut(s)	197, 223, 277
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	95, 111
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	5 cut(s)	170, 193, 256, 259, 268
BlsI	GCNGC	5 cut(s)	171, 194, 257, 260, 269
Bme1390I	CCNGG	3 cut(s)	95, 111, 226
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	3 cut(s)	95, 111, 226
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	95, 111
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 143, 173
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	55, 138
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	111
BseX3I	CGGCCG	2 cut(s)	256, 265
Bsh1285I	CGRYCG	2 cut(s)	259, 268
BshFI	GGCC	2 cut(s)	258, 267
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	2 cut(s)	259, 268
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	95, 111, 138
BsnI	GGCC	2 cut(s)	258, 267
Bsp1286I	GDGCHC	2 cut(s)	42, 111
Bsp143I	GATC	2 cut(s)	21, 200
BspACI	CCGC	6 cut(s)	170, 193, 217, 255, 259, 268
BspANI	GGCC	2 cut(s)	258, 267
BspCNI	CTCAG	2 cut(s)	54, 137
BspLI	GGNNCC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	21, 200
BssNI	GRCGYC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	121, 139
BstDEI	CTNAG	2 cut(s)	41, 124
BstDSI	CCRYGG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	24, 203
BstMBI	GATC	2 cut(s)	21, 200
BstMCI	CGRYCG	2 cut(s)	259, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 264, 267
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	93, 109, 224
BstSLI	GKGCMC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BstZI	CGGCCG	2 cut(s)	256, 265
BsuRI	GGCC	2 cut(s)	258, 267
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	2 cut(s)	20, 100
Cac8I	GCNNGC	2 cut(s)	121, 139
CciNI	GCGGCCGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	137
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	8 cut(s)	40, 52, 64, 141, 229, 258, 267, 324
CviKI_1	RGCY	8 cut(s)	40, 52, 64, 141, 229, 258, 267, 324
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	41, 124
DpnI	GATC	2 cut(s)	23, 202
DpnII	GATC	2 cut(s)	21, 200
EaeI	YGGCCR	2 cut(s)	256, 265
EagI	CGGCCG	2 cut(s)	256, 265
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	40
EclXI	CGGCCG	2 cut(s)	256, 265
Eco24I	GRGCYC	1 cut(s)	42
Eco52I	CGGCCG	2 cut(s)	256, 265
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	42
FaiI	YATR	2 cut(s)	101, 248
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	170, 193, 256, 259, 268
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	170, 193, 256, 259, 268
GluI	GCNGC	5 cut(s)	170, 193, 256, 259, 268
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	258, 267
HapII	CCGG	3 cut(s)	95, 111, 138
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	79, 151
HindII	GTYRAC	2 cut(s)	79, 151
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	3 cut(s)	80, 298, 307
HpaII	CCGG	3 cut(s)	95, 111, 138
HphI	GGTGA	3 cut(s)	197, 223, 277
Hpy166II	GTNNAC	2 cut(s)	79, 151
Hpy188I	TCNGA	3 cut(s)	297, 317, 342
Hpy188III	TCNNGA	4 cut(s)	14, 58, 89, 130
Hpy8I	GTNNAC	2 cut(s)	79, 151
Hpy99I	CGWCG	2 cut(s)	80, 169
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 264, 267
HpyF3I	CTNAG	2 cut(s)	41, 124
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	21, 200
LmnI	GCTCC	1 cut(s)	37
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	23, 202
MboI	GATC	2 cut(s)	21, 200
MboII	GAAGA	3 cut(s)	177, 274, 355
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	42, 111
MluCI	AATT	2 cut(s)	302, 332
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	184, 190, 193, 220, 244, 254
MroNI	GCCGGC	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	3 cut(s)	95, 111, 138
MspR9I	CCNGG	3 cut(s)	95, 111, 226
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	120, 264, 267
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	95, 111
NdeII	GATC	2 cut(s)	21, 200
NgoMIV	GCCGGC	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	108
NotI	GCGGCCGC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	298, 307
PkrI	GCNGC	5 cut(s)	171, 194, 257, 260, 269
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	5 cut(s)	170, 193, 256, 259, 268
Sau3AI	GATC	2 cut(s)	21, 200
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	95, 111, 226
SduI	GDGCHC	2 cut(s)	42, 111
SetI	ASST	6 cut(s)	42, 47, 54, 73, 78, 236
SfaNI	GCATC	1 cut(s)	123
SfiI	GGCCNNNNNGGCC	1 cut(s)	264
Sse9I	AATT	2 cut(s)	302, 332
SsiI	CCGC	6 cut(s)	170, 193, 217, 255, 259, 268
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	93, 109, 224
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	78, 90
TasI	AATT	2 cut(s)	302, 332
TauI	GCSGC	5 cut(s)	172, 195, 258, 261, 270
TfiI	GAWTC	2 cut(s)	298, 307
TspDTI	ATGAA	1 cut(s)	265
XapI	RAATTY	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.