Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

17123830 .. 17124577

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGAACGAGTTGGGTTTCTCAAGCTGTGGTGCTACGAACAAAAGCAATACTTTGTCTCTTGGGGTTACTAATGCTAATACTCAGACCTCGAATCGTGAAAAAGGCCATTGTTGCGGTGGGCATTGATAGCATTAAGAAAATCTCTGATACTTTTGGGCAGAGGACTTCAATTTACAGAGAAGTTACTAGACATCGTTGGACGGGTAGATATGAAGCGCATCTAATCTCAACGGTCAACTTATGGTCCCCGGCGCCACCCTTGTCCTCCTCCTCCTGCCGCACCAGATCCCACCCCTCCGGCCACCGCACCACCAGCTCACCTCATACTTCCTCGTATTTACGGTGGCCACGCCGCCACTTCATCATCTTCGCCACCATTCCAATTCAATTGGATCAAATTAGAAAAACCCAACCCAAATTTGGTCTGGAGATTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

147

Amino Acids

16.83

Weight (kDa)

11.46

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	4 cut(s)	116, 280, 307, 355
AclWI	GGATC	2 cut(s)	282, 402
AcoI	YGGCCR	2 cut(s)	301, 347
AcsI	RAATTY	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	171, 389
AluBI	AGCT	2 cut(s)	26, 318
AluI	AGCT	2 cut(s)	26, 318
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	282, 402
AoxI	GGCC	3 cut(s)	105, 301, 347
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	220, 256
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	2 cut(s)	280, 355
BlsI	GCNGC	2 cut(s)	281, 356
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	248, 255
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	259, 262
BshFI	GGCC	3 cut(s)	107, 303, 349
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	251, 300
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	107, 303, 349
Bsp143I	GATC	2 cut(s)	287, 394
BspACI	CCGC	4 cut(s)	116, 280, 307, 355
BspANI	GGCC	3 cut(s)	107, 303, 349
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	248, 255
BspPI	GGATC	2 cut(s)	282, 402
BspT107I	GGYRCC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	287, 394
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	235, 345
BstACI	GRCGYC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	220, 256
BstKTI	GATC	2 cut(s)	290, 397
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	287, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 129, 315
BstSCI	CCNGG	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	107, 303, 349
CfoI	GCGC	2 cut(s)	220, 256
Cfr13I	GGNCC	1 cut(s)	246
CviJI	RGCY	5 cut(s)	26, 107, 303, 318, 349
CviKI_1	RGCY	5 cut(s)	26, 107, 303, 318, 349
DdeI	CTNAG	1 cut(s)	83
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	2 cut(s)	289, 396
DpnII	GATC	2 cut(s)	287, 394
EaeI	YGGCCR	2 cut(s)	301, 347
Eco47I	GGWCC	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
FaiI	YATR	3 cut(s)	213, 244, 327
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	280, 355
Fsp4HI	GCNGC	2 cut(s)	280, 355
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	2 cut(s)	219, 255
GluI	GCNGC	2 cut(s)	280, 355
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	107, 303, 349
HapII	CCGG	2 cut(s)	251, 300
HhaI	GCGC	2 cut(s)	220, 256
Hin1I	GRCGYC	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	218, 254
HinP1I	GCGC	2 cut(s)	218, 254
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	2 cut(s)	251, 300
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	86, 148
Hpy188III	TCNNGA	2 cut(s)	97, 428
Hpy8I	GTNNAC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	235, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 129, 315
HpyF3I	CTNAG	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	254
HspAI	GCGC	2 cut(s)	218, 254
KasI	GGCGCC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	287, 394
LpnPI	CCDG	6 cut(s)	264, 289, 298, 313, 328, 413
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	66, 184
MalI	GATC	2 cut(s)	289, 396
MboI	GATC	2 cut(s)	287, 394
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	349
MluCI	AATT	5 cut(s)	171, 384, 389, 399, 419
MluNI	TGGCCA	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	99, 156, 277, 280, 283, 307, 333, 343
Mox20I	TGGCCA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	349
MspI	CCGG	2 cut(s)	251, 300
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	113, 129, 315
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	287, 394
NlaIV	GGNNCC	2 cut(s)	248, 255
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	281, 356
PluTI	GGCGCC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	248, 255
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	280, 355
Sau3AI	GATC	2 cut(s)	287, 394
Sau96I	GGNCC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	4 cut(s)	28, 91, 320, 325
SfaNI	GCATC	1 cut(s)	229
SfoI	GGCGCC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	171, 384, 389, 399, 419
SsiI	CCGC	4 cut(s)	116, 280, 307, 355
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	235, 345
TaqI	TCGA	1 cut(s)	91
TasI	AATT	5 cut(s)	171, 384, 389, 399, 419
TauI	GCSGC	2 cut(s)	282, 357
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	228, 352
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	3 cut(s)	115, 419, 424
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.