Rh6AG258900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014873
Physical Location & Seq
Reverse (-)
45034213 .. 45040029
5817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG258900.1

Sequence Viewer

Length: 324 bp
ATGAGTGCCAAATCGTGGGAGACGACGTCGAATTCACCGGAGGAGGAGGCCATGTCTGCGGCGGCGGCCGCGACATCGTCTTCATCAAAGGAGGAAGAGGTGGAGGACACTGATGAAACTCAGACCACCATCTCGTCGTCATCATTGTCCTCTGAGGAGAACAGGCAAAATCTCCGGTTTCAGGCGGAGCTGAACCAAAGGGAAGCTTTGCTGTTGATTCAAGAACCATTCTTTGGGCTCTGTGATTCTCCTGCGTTTGTGCTACTGAACTATCTCAGGTTTCAGTGTTCACTGATGCTGGAGTTGCTAGGTTCAGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.79

Weight (kDa)

4.1

Isoelectric Point (pI)

72.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccB7I CCANNNNNTGG 2 cut(s) 15, 233
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 59, 62, 65, 69, 185
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 3 cut(s) 15, 181, 233
AgsI TTSAA 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 2 cut(s) 190, 206
AluI AGCT 2 cut(s) 190, 206
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 2 cut(s) 48, 66
ApoI RAATTY 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 72
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 308
BisI GCNGC 4 cut(s) 60, 63, 66, 69
BlsI GCNGC 4 cut(s) 61, 64, 67, 70
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 37, 174
BsaXI ACNNNNNCTCC 4 cut(s) 11, 38, 41, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 181, 233
BseLI CCNNNNNNNGG 3 cut(s) 15, 181, 233
BseMII CTCAG 3 cut(s) 134, 144, 289
BseRI GAGGAG 3 cut(s) 56, 59, 170
BseX3I CGGCCG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 50, 68
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 2 cut(s) 38, 175
BslI CCNNNNNNNGG 3 cut(s) 15, 181, 233
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 50, 68
Bsp1286I GDGCHC 1 cut(s) 240
BspACI CCGC 5 cut(s) 59, 62, 65, 69, 185
BspANI GGCC 2 cut(s) 50, 68
BspCNI CTCAG 3 cut(s) 133, 145, 288
BspFNI CGCG 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 120, 153, 275
BstFNI CGCG 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 68, 304
BstUI CGCG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 50, 68
BtsIMutI CAGTG 3 cut(s) 108, 290, 290
CciNI GCGGCCGC 1 cut(s) 66
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 50, 68, 190, 206, 238
CviKI_1 RGCY 5 cut(s) 50, 68, 190, 206, 238
DdeI CTNAG 3 cut(s) 120, 153, 275
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 200
EclXI CGGCCG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 240
Eco52I CGGCCG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 60, 63, 66, 69
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 60, 63, 66, 69
FspBI CTAG 1 cut(s) 308
GluI GCNGC 4 cut(s) 60, 63, 66, 69
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 50, 68
HapII CCGG 2 cut(s) 38, 175
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 2 cut(s) 217, 245
HpaII CCGG 2 cut(s) 38, 175
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 123, 154
Hpy188III TCNNGA 2 cut(s) 221, 321
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 3 cut(s) 28, 31, 139
HpyCH4IV ACGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 68, 304
HpyF3I CTNAG 3 cut(s) 120, 153, 275
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 55
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 51, 148, 167, 188, 262, 264, 284
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 26
MboII GAAGA 2 cut(s) 72, 107
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 31
MnlI CCTC 8 cut(s) 34, 37, 40, 85, 91, 97, 148, 160
MspI CCGG 2 cut(s) 38, 175
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 68, 304
NlaIII CATG 1 cut(s) 55
NotI GCGGCCGC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 2 cut(s) 217, 245
PflFI GACNNNGTC 2 cut(s) 25, 76
PflMI CCANNNNNTGG 2 cut(s) 15, 233
PkrI GCNGC 4 cut(s) 61, 64, 67, 70
PsyI GACNNNGTC 2 cut(s) 25, 76
SatI GCNGC 4 cut(s) 60, 63, 66, 69
SduI GDGCHC 1 cut(s) 240
SetI ASST 6 cut(s) 29, 102, 192, 208, 281, 313
SfaNI GCATC 1 cut(s) 285
Sse9I AATT 1 cut(s) 31
SsiI CCGC 5 cut(s) 59, 62, 65, 69, 185
SspMI CTAG 1 cut(s) 308
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 31
TauI GCSGC 4 cut(s) 62, 65, 68, 71
TfiI GAWTC 2 cut(s) 217, 245
TscAI CASTG 3 cut(s) 115, 290, 297
TspDTI ATGAA 2 cut(s) 72, 129
TspRI CASTG 3 cut(s) 115, 290, 297
Tth111I GACNNNGTC 2 cut(s) 25, 76
Van91I CCANNNNNTGG 2 cut(s) 15, 233
XapI RAATTY 1 cut(s) 31
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.