Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003261.1

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

21888 .. 23860

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003261.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgcactcatggaggtttttccagatccagcggcgacgcggcttttggagcttcttggcggtggtgcgcggtgctgaatcggcgaagtgggctcgtgtcagggtgctacttcgacgatggctcgtggcggcgttggttttgtctcttggcggagctcggcggcgagactctggtttcatggtggaggtcgtgcagaggaactgcaccggcatgtacaggcgacaactagctgatggagatggtgtccggactcgggactttctcggcgactccatggtgcgctacgccgacagccaaacagagacgcaggactcgttgctgatccaaatctacgaccaggactcgtcggcctactttggtgaccaccaccaaaaccaggatctcaaggcgaatactggtttccaagccttttcggctaactcgggctccgaggtggaggactcggcatccatggccagggatcagctcgcttgcgccgagtttacaggtcactcggttgaacctcgaatcgtgaaaaaggccattgttgcggtggacattgatagcactaagaaaatctctgatacttttgggcagaggacttcaatttacagaggagttactagacatcgttggacgggtagatatgaagtgcatctaatctcaacagtcaacttacggtccccggcgccaccctcgtcctcctcctcctgccgcactagatcccacccctccggccaccgcacccccagctcacctcatacttcctcgtattcacggtggcacgccgccacttcatcatcttcgccaccattccaattcaattggatcaaattagcaaaacccaacccaaatttggtctggagatttggttttgatttgagaagaaggctattattttgggtatttagagagagaagctgggagagagggggtgggggttatagagagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

311

Amino Acids

35.59

Weight (kDa)

10.68

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AccII	CGCG	2 cut(s)	39, 69
AccIII	TCCGGA	1 cut(s)	246
AclWI	GGATC	6 cut(s)	19, 316, 387, 468, 696, 815
AcoI	YGGCCR	2 cut(s)	453, 715
AcsI	RAATTY	1 cut(s)	832
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	253, 376, 456, 835
AgsI	TTSAA	3 cut(s)	500, 585, 802
AjnI	CCWGG	3 cut(s)	336, 375, 455
AluBI	AGCT	6 cut(s)	51, 155, 230, 466, 732, 900
AluI	AGCT	6 cut(s)	51, 155, 230, 466, 732, 900
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	3 cut(s)	147, 159, 296
AlwI	GGATC	6 cut(s)	19, 316, 387, 468, 696, 815
Ama87I	CYCGRG	2 cut(s)	252, 421
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	4 cut(s)	348, 453, 519, 715
ApoI	RAATTY	1 cut(s)	832
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AspLEI	GCGC	4 cut(s)	69, 282, 476, 670
AspS9I	GGNCC	1 cut(s)	660
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	371, 726
AvaI	CYCGRG	2 cut(s)	252, 421
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	3 cut(s)	94, 157, 428
BauI	CACGAG	2 cut(s)	93, 122
Bbv12I	GWGCWC	1 cut(s)	157
BccI	CCATC	3 cut(s)	111, 227, 233
BciT130I	CCWGG	3 cut(s)	338, 377, 457
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	3 cut(s)	147, 159, 296
BfaI	CTAG	3 cut(s)	227, 603, 699
BfoI	RGCGCY	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	6 cut(s)	32, 40, 129, 161, 694, 768
BlsI	GCNGC	6 cut(s)	33, 41, 130, 162, 695, 769
Bme1390I	CCNGG	4 cut(s)	338, 377, 457, 665
Bme18I	GGWCC	1 cut(s)	660
BmeT110I	CYCGRG	2 cut(s)	252, 421
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	3 cut(s)	427, 662, 669
BmrFI	CCNGG	4 cut(s)	338, 377, 457, 665
BmsI	GCATC	2 cut(s)	455, 643
BpmI	CTGGAG	1 cut(s)	862
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	5 cut(s)	273, 429, 450, 456, 663
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	6 cut(s)	228, 258, 410, 440, 835, 865
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 376, 456, 835
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	338, 377, 457
BseDI	CCNNGG	5 cut(s)	273, 429, 450, 456, 663
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	4 cut(s)	253, 376, 456, 835
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	609, 673, 676
BseYI	CCCAGC	2 cut(s)	728, 900
BsgI	GTGCAG	2 cut(s)	187, 212
Bsh1236I	CGCG	2 cut(s)	39, 69
BshFI	GGCC	4 cut(s)	350, 455, 521, 717
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	2 cut(s)	252, 421
BsiSI	CCGG	4 cut(s)	207, 247, 665, 714
BslFI	GGGAC	2 cut(s)	269, 646
BslI	CCNNNNNNNGG	4 cut(s)	253, 376, 456, 835
BsmAI	GTCTC	3 cut(s)	147, 159, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	269, 646
BsnI	GGCC	4 cut(s)	350, 455, 521, 717
BsoBI	CYCGRG	2 cut(s)	252, 421
Bsp1286I	GDGCHC	3 cut(s)	94, 157, 428
Bsp13I	TCCGGA	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
Bsp19I	CCATGG	2 cut(s)	273, 450
BspANI	GGCC	4 cut(s)	350, 455, 521, 717
BspEI	TCCGGA	1 cut(s)	246
BspFNI	CGCG	2 cut(s)	39, 69
BspLI	GGNNCC	3 cut(s)	427, 662, 669
BspPI	GGATC	6 cut(s)	19, 316, 387, 468, 696, 815
BspT107I	GGYRCC	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	273, 429, 450, 456, 663
BssMI	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
BssNI	GRCGYC	1 cut(s)	668
BssSI	CACGAG	2 cut(s)	93, 122
BssT1I	CCWWGG	2 cut(s)	273, 450
Bst2BI	CACGAG	2 cut(s)	93, 122
Bst2UI	CCWGG	3 cut(s)	338, 377, 457
Bst4CI	ACNGT	3 cut(s)	649, 660, 759
BstACI	GRCGYC	1 cut(s)	668
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	468, 472, 765
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	2 cut(s)	273, 450
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	2 cut(s)	39, 69
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	4 cut(s)	69, 282, 476, 670
BstKTI	GATC	6 cut(s)	27, 324, 382, 463, 704, 810
BstMAI	GTCTC	3 cut(s)	147, 159, 296
BstMBI	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 80, 89, 413, 452, 527, 729
BstNI	CCWGG	3 cut(s)	338, 377, 457
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	4 cut(s)	336, 375, 455, 663
BstUI	CGCG	2 cut(s)	39, 69
BstX2I	RGATCY	3 cut(s)	24, 379, 701
BstYI	RGATCY	3 cut(s)	24, 379, 701
BsuRI	GGCC	4 cut(s)	350, 455, 521, 717
BtgI	CCRYGG	2 cut(s)	273, 450
BtsCI	GGATG	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	468, 472, 765
CfoI	GCGC	4 cut(s)	69, 282, 476, 670
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	2 cut(s)	45, 313
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	5 cut(s)	9, 178, 211, 274, 451
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	549
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	6 cut(s)	26, 323, 381, 462, 703, 809
DpnII	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
EaeI	YGGCCR	2 cut(s)	453, 715
EciI	GGCGGA	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	273, 450
Eco24I	GRGCYC	3 cut(s)	94, 157, 428
Eco47I	GGWCC	1 cut(s)	660
Eco53kI	GAGCTC	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	252, 421
Eco91I	GGTNACC	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	3 cut(s)	336, 375, 455
EcoT14I	CCWWGG	2 cut(s)	273, 450
EcoT38I	GRGCYC	3 cut(s)	94, 157, 428
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	273, 450
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	12, 181, 214, 277, 454
FaiI	YATR	8 cut(s)	10, 179, 212, 275, 452, 627, 741, 924
FaqI	GGGAC	2 cut(s)	269, 646
FatI	CATG	5 cut(s)	8, 177, 210, 273, 450
Fnu4HI	GCNGC	6 cut(s)	32, 40, 129, 161, 694, 768
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	3 cut(s)	94, 157, 428
Fsp4HI	GCNGC	6 cut(s)	32, 40, 129, 161, 694, 768
FspBI	CTAG	3 cut(s)	227, 603, 699
GlaI	GCGC	4 cut(s)	68, 281, 475, 669
GluI	GCNGC	6 cut(s)	32, 40, 129, 161, 694, 768
GsaI	CCCAGC	2 cut(s)	732, 904
GsuI	CTGGAG	1 cut(s)	862
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	350, 455, 521, 717
HapII	CCGG	4 cut(s)	207, 247, 665, 714
HgaI	GACGC	2 cut(s)	45, 313
HhaI	GCGC	4 cut(s)	69, 282, 476, 670
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	12, 181, 214, 277, 454
Hin6I	GCGC	4 cut(s)	67, 280, 474, 668
HinP1I	GCGC	4 cut(s)	67, 280, 474, 668
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	8 cut(s)	77, 167, 250, 269, 311, 341, 440, 507
HpaII	CCGG	4 cut(s)	207, 247, 665, 714
HphI	GGTGA	2 cut(s)	371, 726
Hpy166II	GTNNAC	3 cut(s)	483, 535, 652
Hpy188I	TCNGA	2 cut(s)	430, 562
Hpy188III	TCNNGA	5 cut(s)	22, 247, 254, 511, 841
Hpy8I	GTNNAC	3 cut(s)	483, 535, 652
Hpy99I	CGWCG	3 cut(s)	39, 117, 349
HpyAV	CCTTC	1 cut(s)	861
HpyCH4III	ACNGT	3 cut(s)	649, 660, 759
HpyCH4V	TGCA	4 cut(s)	4, 193, 204, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 80, 89, 413, 452, 527, 729
HpyF3I	CTNAG	1 cut(s)	549
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	5 cut(s)	12, 181, 214, 277, 454
HspAI	GCGC	4 cut(s)	67, 280, 474, 668
KasI	GGCGCC	1 cut(s)	667
Kpn2I	TCCGGA	1 cut(s)	246
Kzo9I	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
LmnI	GCTCC	3 cut(s)	48, 152, 431
LweI	GCATC	2 cut(s)	455, 643
MaeI	CTAG	3 cut(s)	227, 603, 699
MaeIII	GTNAC	3 cut(s)	359, 488, 598
MalI	GATC	6 cut(s)	26, 323, 381, 462, 703, 809
MboI	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
MboII	GAAGA	2 cut(s)	774, 876
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	3 cut(s)	24, 379, 701
MhlI	GDGCHC	3 cut(s)	94, 157, 428
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	5 cut(s)	585, 797, 802, 812, 832
MluNI	TGGCCA	1 cut(s)	455
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	6 cut(s)	161, 244, 263, 305, 335, 434
MmeI	TCCRAC	1 cut(s)	593
Mox20I	TGGCCA	1 cut(s)	455
MroI	TCCGGA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	4 cut(s)	207, 247, 665, 714
MspR9I	CCNGG	4 cut(s)	338, 377, 457, 665
MunI	CAATTG	1 cut(s)	802
MvaI	CCWGG	3 cut(s)	338, 377, 457
MvnI	CGCG	2 cut(s)	39, 69
MwoI	GCNNNNNNNGC	7 cut(s)	48, 80, 89, 413, 452, 527, 729
NarI	GGCGCC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	665
NcoI	CCATGG	2 cut(s)	273, 450
NdeII	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
NlaIII	CATG	5 cut(s)	12, 181, 214, 277, 454
NlaIV	GGNNCC	3 cut(s)	427, 662, 669
NmeAIII	GCCGAG	4 cut(s)	136, 243, 422, 502
NmuCI	GTSAC	2 cut(s)	359, 488
NspI	RCATGY	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 474
PfeI	GAWTC	2 cut(s)	77, 507
PkrI	GCNGC	6 cut(s)	33, 41, 130, 162, 695, 769
PleI	GAGTC	6 cut(s)	161, 244, 263, 305, 335, 434
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	6 cut(s)	161, 244, 263, 305, 335, 434
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	336, 375, 455
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	2 cut(s)	728, 900
PspGI	CCWGG	3 cut(s)	336, 375, 455
PspN4I	GGNNCC	3 cut(s)	427, 662, 669
PspPI	GGNCC	1 cut(s)	660
PsuI	RGATCY	3 cut(s)	24, 379, 701
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	157
SatI	GCNGC	6 cut(s)	32, 40, 129, 161, 694, 768
Sau3AI	GATC	6 cut(s)	24, 321, 379, 460, 701, 807
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	6 cut(s)	161, 244, 263, 305, 335, 434
ScrFI	CCNGG	4 cut(s)	338, 377, 457, 665
SduI	GDGCHC	3 cut(s)	94, 157, 428
SfaNI	GCATC	2 cut(s)	455, 643
SfoI	GGCGCC	1 cut(s)	669
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	585, 797, 802, 812, 832
SspDI	GGCGCC	1 cut(s)	667
SspMI	CTAG	3 cut(s)	227, 603, 699
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	4 cut(s)	336, 375, 455, 663
StyI	CCWWGG	2 cut(s)	273, 450
TaaI	ACNGT	3 cut(s)	649, 660, 759
TaqI	TCGA	2 cut(s)	112, 505
TasI	AATT	5 cut(s)	585, 797, 802, 812, 832
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	6 cut(s)	34, 42, 131, 163, 696, 770
TfiI	GAWTC	2 cut(s)	77, 507
TseFI	GTSAC	2 cut(s)	359, 488
Tsp45I	GTSAC	2 cut(s)	359, 488
TspDTI	ATGAA	3 cut(s)	166, 642, 765
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	3 cut(s)	529, 832, 837
XspI	CTAG	3 cut(s)	227, 603, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.