Rh6BG262300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014873
Physical Location & Seq
Reverse (-)
47706927 .. 47712758
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG262300.1

Sequence Viewer

Length: 282 bp
ATGAGTGCCGAATCGTGGGAGACTGCGTCGAATTCACCGGAGGAGGAGGCCATGTCTGCTGCGGCGGCCGTGACATCGTCTTCATCAGAGGAGGAAGAGGTGGGGGACATTGATGAAACTCAGACCACCATCTCGTTGTCGTCGTCGTCGTTGTCCTCTGAGGAGAACAGTCTTCGTCTTTGTGGAAAGAGGGAAGCTTTGCTGTTGATTCAAGAACCCTTCTTTGGGCTCTGTGATTCTCCTGTGTTTGTGCTACTGAACTATCTCAGGTTTCAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.09

Weight (kDa)

4.05

Isoelectric Point (pI)

88.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 65
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 15, 224, 225
AgsI TTSAA 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 2 cut(s) 48, 66
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 2 cut(s) 72, 164
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 3 cut(s) 60, 63, 66
BlsI GCNGC 3 cut(s) 61, 64, 67
BpiI GAAGAC 2 cut(s) 72, 164
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 11, 38, 41, 68
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 224, 225
BseLI CCNNNNNNNGG 3 cut(s) 15, 224, 225
BseMII CTCAG 3 cut(s) 134, 150, 280
BseRI GAGGAG 4 cut(s) 56, 59, 104, 176
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 50, 68
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 15, 224, 225
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 50, 68
Bsp1286I GDGCHC 1 cut(s) 231
BspACI CCGC 2 cut(s) 62, 65
BspANI GGCC 2 cut(s) 50, 68
BspCNI CTCAG 3 cut(s) 133, 151, 279
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 120, 159, 266
BstMAI GTCTC 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 56, 65
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 72, 164
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 50, 68
BtsIMutI CAGTG 1 cut(s) 281
CseI GACGC 1 cut(s) 15
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 50, 68, 197, 229
CviKI_1 RGCY 4 cut(s) 50, 68, 197, 229
DdeI CTNAG 3 cut(s) 120, 159, 266
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 60, 63, 66
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 60, 63, 66
GluI GCNGC 3 cut(s) 60, 63, 66
HaeIII GGCC 2 cut(s) 50, 68
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 3 cut(s) 11, 208, 236
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 88, 123, 160
Hpy188III TCNNGA 1 cut(s) 212
Hpy99I CGWCG 4 cut(s) 31, 145, 148, 151
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 65
HpyF3I CTNAG 3 cut(s) 120, 159, 266
Hsp92II CATG 1 cut(s) 55
LpnPI CCDG 3 cut(s) 51, 253, 255
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 3 cut(s) 72, 107, 164
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 31
MnlI CCTC 9 cut(s) 34, 37, 40, 82, 85, 91, 154, 166, 183
MseI TTAA 1 cut(s) 280
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 56, 65
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 140, 146
PfeI GAWTC 3 cut(s) 11, 208, 236
PflFI GACNNNGTC 2 cut(s) 25, 76
PkrI GCNGC 3 cut(s) 61, 64, 67
PsyI GACNNNGTC 2 cut(s) 25, 76
SaqAI TTAA 1 cut(s) 280
SatI GCNGC 3 cut(s) 60, 63, 66
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 102, 199, 272
SgeI CNNG 7 cut(s) 27, 50, 64, 82, 145, 224, 254
Sse9I AATT 1 cut(s) 31
SsiI CCGC 2 cut(s) 62, 65
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 31
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 3 cut(s) 11, 208, 236
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
TscAI CASTG 1 cut(s) 281
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 72, 129
TspRI CASTG 1 cut(s) 281
Tth111I GACNNNGTC 2 cut(s) 25, 76
XapI RAATTY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.