Rh2DG399800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014873
Physical Location & Seq
Forward (+)
58197879 .. 58198157
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG399800.1

Sequence Viewer

Length: 279 bp
ATGATTTTTGCATTTGGTTGCTACAGACATCGTTGGACGGGTAGATATGAAGCGCATCTAATCTCAACGGTCAACTTACGGTCCCCGGCGCCACCCTCGTCCTCCTCCTCCTGCCGCACCAGATCCCACCCCTCCGGCCACCGCACCACCAGCTCACCTCATACTTCCTCGTATTCACGGTGGCCACGCCGCCACTTCATCATCTTCGCCACCATTCCAATTCAATTGGATCAAATTAGAAAAACCCAACCCAAATTTGGTCTGGAGATTTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

11.4

Isoelectric Point (pI)

75.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AciI CCGC 3 cut(s) 115, 142, 190
AclWI GGATC 2 cut(s) 117, 237
AcoI YGGCCR 2 cut(s) 136, 182
AcsI RAATTY 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AlwI GGATC 2 cut(s) 117, 237
AoxI GGCC 2 cut(s) 136, 182
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 2 cut(s) 55, 91
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 81
BalI TGGCCA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 2 cut(s) 115, 190
BlsI GCNGC 2 cut(s) 116, 191
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 83, 90
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 94, 97
BshFI GGCC 2 cut(s) 138, 184
BshNI GGYRCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 86, 135
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 138, 184
Bsp143I GATC 2 cut(s) 122, 229
BspACI CCGC 3 cut(s) 115, 142, 190
BspANI GGCC 2 cut(s) 138, 184
BspLI GGNNCC 2 cut(s) 83, 90
BspPI GGATC 2 cut(s) 117, 237
BspT107I GGYRCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 122, 229
BssNI GRCGYC 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 70, 81, 180
BstACI GRCGYC 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 55, 91
BstKTI GATC 2 cut(s) 125, 232
BstMBI GATC 2 cut(s) 122, 229
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 2 cut(s) 138, 184
CfoI GCGC 2 cut(s) 55, 91
Cfr13I GGNCC 1 cut(s) 81
CviJI RGCY 3 cut(s) 138, 153, 184
CviKI_1 RGCY 3 cut(s) 138, 153, 184
DinI GGCGCC 1 cut(s) 90
DpnI GATC 2 cut(s) 124, 231
DpnII GATC 2 cut(s) 122, 229
EaeI YGGCCR 2 cut(s) 136, 182
Eco47I GGWCC 1 cut(s) 81
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
FaiI YATR 2 cut(s) 48, 162
FaqI GGGAC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 115, 190
Fsp4HI GCNGC 2 cut(s) 115, 190
GlaI GCGC 2 cut(s) 54, 90
GluI GCNGC 2 cut(s) 115, 190
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 138, 184
HapII CCGG 2 cut(s) 86, 135
HhaI GCGC 2 cut(s) 55, 91
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 2 cut(s) 53, 89
HinP1I GCGC 2 cut(s) 53, 89
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 86, 135
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 70, 81, 180
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 2 cut(s) 53, 89
KasI GGCGCC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 122, 229
LpnPI CCDG 6 cut(s) 99, 124, 133, 148, 163, 248
LweI GCATC 1 cut(s) 64
MalI GATC 2 cut(s) 124, 231
MboI GATC 2 cut(s) 122, 229
MboII GAAGA 1 cut(s) 196
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 4 cut(s) 219, 224, 234, 254
MluNI TGGCCA 1 cut(s) 184
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 7 cut(s) 106, 112, 115, 118, 142, 168, 178
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 184
MspI CCGG 2 cut(s) 86, 135
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 150
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 122, 229
NlaIV GGNNCC 2 cut(s) 83, 90
PkrI GCNGC 2 cut(s) 116, 191
PluTI GGCGCC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 83, 90
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 122
SatI GCNGC 2 cut(s) 115, 190
Sau3AI GATC 2 cut(s) 122, 229
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 86
SetI ASST 2 cut(s) 155, 160
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 90
SinI GGWCC 1 cut(s) 81
Sse9I AATT 4 cut(s) 219, 224, 234, 254
SsiI CCGC 3 cut(s) 115, 142, 190
SspDI GGCGCC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 70, 81, 180
TasI AATT 4 cut(s) 219, 224, 234, 254
TauI GCSGC 2 cut(s) 117, 192
TspDTI ATGAA 2 cut(s) 63, 187
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 254, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.