Rh6BG168900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014873
Physical Location & Seq
Reverse (-)
27849573 .. 27850525
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG168900.1

Sequence Viewer

Length: 477 bp
ATGAGCGCCGACTCGTGGGAGACGATGTCGAATTCACCGGAGGAGGAGGCCATGTCGGCGGCGTCGTCGTCGTCGTCTTCATCGGATGAGGAAGAGGTGGAGGACACTGATGAATTTCAAACCACCATCTCGTCGTCGTCGTCGTCGTCGTCCTCTGCGAAGAAGAGGCAAAATCTCCTGTTTCATGCTGAGCTGAACCAAGTTCGTCTATTCCAGAGGGCCTTGAGACCCCTATTTCAGACTGCCTACACCGACCAAGAGTACCCGGACGACATGTTCCTCGCCGGACACATCCGCGACGCTGGCCACTTCTACACCAGATCTCACCCTTCCAGTCGCACCAGCAGCCTCACCTTGTACTTCCTCGTATTTAGCGGCGGCCATGGCCACCACTTCATCATCTTCACCACCACTCTGATTCAATTGAATCAAATCAGAAAAACCCAACCTAAATTTGGTCTGAAGATTTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.9

Weight (kDa)

5.57

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 297
AciI CCGC 4 cut(s) 59, 295, 375, 378
AcoI YGGCCR 3 cut(s) 304, 379, 385
AcsI RAATTY 3 cut(s) 31, 113, 452
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 263, 359
AfiI CCNNNNNNNGG 2 cut(s) 15, 455
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 119, 422, 427
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 14, 220
AoxI GGCC 5 cut(s) 48, 219, 304, 379, 385
ApeKI GCWGC 1 cut(s) 345
ApoI RAATTY 3 cut(s) 31, 113, 452
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 4 cut(s) 27, 317, 343, 397
BalI TGGCCA 2 cut(s) 306, 387
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 357
BccI CCATC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 14, 220
BfoI RGCGCY 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 320
BisI GCNGC 4 cut(s) 60, 346, 376, 379
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 4 cut(s) 61, 347, 377, 380
Bme1390I CCNGG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 11, 38, 41, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 455
Bse1I ACTGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 91, 291
BseLI CCNNNNNNNGG 2 cut(s) 15, 455
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 56, 59
BseXI GCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 5 cut(s) 50, 221, 306, 381, 387
BsiSI CCGG 3 cut(s) 38, 266, 285
BslI CCNNNNNNNGG 2 cut(s) 15, 455
BsmAI GTCTC 2 cut(s) 14, 220
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 5 cut(s) 50, 221, 306, 381, 387
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 320
Bsp1720I GCTNAGC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 4 cut(s) 59, 295, 375, 378
BspANI GGCC 5 cut(s) 50, 221, 306, 381, 387
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 87, 158
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 91, 291
BstFNI CGCG 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 2 cut(s) 14, 220
BstMBI GATC 1 cut(s) 320
BstMWI GCNNNNNNNGC 4 cut(s) 56, 303, 345, 384
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 5 cut(s) 50, 221, 306, 381, 387
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 2 cut(s) 91, 291
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 2 cut(s) 51, 308
Csp6I GTAC 2 cut(s) 262, 358
CviAII CATG 4 cut(s) 52, 185, 274, 383
CviJI RGCY 7 cut(s) 50, 193, 221, 306, 348, 381, 387
CviKI_1 RGCY 7 cut(s) 50, 193, 221, 306, 348, 381, 387
CviQI GTAC 2 cut(s) 262, 358
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
EaeI YGGCCR 3 cut(s) 304, 379, 385
Eam1104I CTCTTC 2 cut(s) 87, 158
EarI CTCTTC 2 cut(s) 87, 158
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 55, 188, 277, 386
FaiI YATR 4 cut(s) 53, 186, 275, 384
FatI CATG 4 cut(s) 51, 184, 273, 382
Fnu4HI GCNGC 4 cut(s) 60, 346, 376, 379
FokI GGATG 2 cut(s) 98, 278
Fsp4HI GCNGC 4 cut(s) 60, 346, 376, 379
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 60, 346, 376, 379
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 5 cut(s) 50, 221, 306, 381, 387
HapII CCGG 3 cut(s) 38, 266, 285
HgaI GACGC 2 cut(s) 51, 308
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 55, 188, 277, 386
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 3 cut(s) 11, 418, 427
HpaII CCGG 3 cut(s) 38, 266, 285
HphI GGTGA 4 cut(s) 27, 317, 343, 397
Hpy188I TCNGA 5 cut(s) 85, 240, 417, 437, 462
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 303, 345, 384
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 55, 188, 277, 386
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 320
LpnPI CCDG 9 cut(s) 51, 191, 227, 279, 288, 298, 331, 346, 355
Lsp1109I GCAGC 1 cut(s) 357
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 6 cut(s) 69, 104, 172, 175, 394, 475
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 320
MlsI TGGCCA 2 cut(s) 306, 387
MluCI AATT 4 cut(s) 31, 113, 422, 452
MluNI TGGCCA 2 cut(s) 306, 387
MlyI GAGTC 1 cut(s) 5
Mox20I TGGCCA 2 cut(s) 306, 387
MscI TGGCCA 2 cut(s) 306, 387
Msp20I TGGCCA 2 cut(s) 306, 387
MspI CCGG 3 cut(s) 38, 266, 285
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 422
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 56, 303, 345, 384
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 382
NdeII GATC 1 cut(s) 320
NlaIII CATG 4 cut(s) 55, 188, 277, 386
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 8 cut(s) 20, 62, 71, 137, 140, 143, 146, 155
PfeI GAWTC 2 cut(s) 418, 427
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 61, 347, 377, 380
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PscI ACATGT 1 cut(s) 273
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 320
PsyI GACNNNGTC 1 cut(s) 25
RsaI GTAC 2 cut(s) 263, 359
RsaNI GTAC 2 cut(s) 262, 358
SatI GCNGC 4 cut(s) 60, 346, 376, 379
Sau3AI GATC 1 cut(s) 320
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 266
SetI ASST 4 cut(s) 99, 195, 356, 451
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 4 cut(s) 31, 113, 422, 452
SsiI CCGC 4 cut(s) 59, 295, 375, 378
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 382
TaqI TCGA 1 cut(s) 29
TasI AATT 4 cut(s) 31, 113, 422, 452
TatI WGTACW 1 cut(s) 357
TauI GCSGC 3 cut(s) 62, 378, 381
TfiI GAWTC 2 cut(s) 418, 427
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 345
TspDTI ATGAA 4 cut(s) 69, 126, 173, 385
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 25
XapI RAATTY 3 cut(s) 31, 113, 452
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.