Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Forward (+)

16052577 .. 16057752

Gene Structure 5176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGATGCTTCTGGACGAGATCGTGCAATTGCTAGAGCTCTGGTTGAAGCTGATCAGGAAGCCCCAGCCTTACGTCTACCTGAATCTCGACCCGGTTCTGCTGGTGCCCGACATCGCTGGCTTCGTCTTGAACGCCATTGACGAAGAGACTGGTAAAGAGGAGAGGGTTTGGGTAAGGATTCTCAGGGCCGACTACGCGTTTCGAACCAAGCTTTGGTCCCGTTTCGATCCTTCTACAGTGACAATCTTTGCTCCGTGTGGATACAAGAGTGTCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

94

Amino Acids

10.99

Weight (kDa)

6.22

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	200
AclWI	GGATC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	49, 133
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	3 cut(s)	40, 52, 214
AluI	AGCT	3 cut(s)	40, 52, 214
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	189, 219
AsuC2I	CCSGG	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	111
BaeI	ACNNNNGTAYC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	189, 219
BmiI	GGNNCC	2 cut(s)	108, 221
BmrFI	CCNGG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	42, 111
Bsp143I	GATC	3 cut(s)	21, 54, 229
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	108, 221
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	21, 54, 229
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	24, 57, 232
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	21, 54, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	191
BtgZI	GCGATG	2 cut(s)	20, 100
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	189, 219
CviJI	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 214
CviKI_1	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 214
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	23, 56, 231
DpnII	GATC	3 cut(s)	21, 54, 229
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	42
FalI	AAGNNNNNCTT	1 cut(s)	260
FaqI	GGGAC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	85, 181
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188III	TCNNGA	4 cut(s)	14, 58, 89, 130
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	21, 54, 229
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	28, 43, 80, 89, 95, 105, 108, 138, 172
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	23, 56, 231
MboI	GATC	3 cut(s)	21, 54, 229
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	42, 111
MluCI	AATT	1 cut(s)	29
MluI	ACGCGT	1 cut(s)	198
MnlI	CCTC	2 cut(s)	154, 159
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	21, 54, 229
NlaIV	GGNNCC	2 cut(s)	108, 221
NmuCI	GTSAC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 141
PfeI	GAWTC	2 cut(s)	85, 181
PflMI	CCANNNNNTGG	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	108, 221
PspPI	GGNCC	2 cut(s)	189, 219
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	21, 54, 229
Sau96I	GGNCC	2 cut(s)	189, 219
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	42, 111
SetI	ASST	5 cut(s)	42, 54, 78, 84, 216
SfcI	CTRYAG	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	1 cut(s)	29
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	90, 205, 228
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	85, 181
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.