Rh3DG193200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014873
Physical Location & Seq
Forward (+)
17290172 .. 17290441
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG193200.1

Sequence Viewer

Length: 270 bp
ATGTCTGCGGCGGCGGCGGCGTCATCTTCATCAGAGGAGGAAGAGGTGGAGGACACTGATGAAACTCAGACCACTATCTTGTTGTCGTCGTCGTCCTCTACGGAGAACAGGCAAAATCTTCGGTTTCATAAGGAGCTGAACCAAGTCCGTCTATTCCAGAAGGCCTTGAGACCCCTGTTTCAGACTGCCTACACCGACCGAGAATACCCGGACGACATGTTCCTCGCCAGACACATCCATGACGCCGGCCACTTCTGCATATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

4.87

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 8, 11, 14, 17
AcoI YGGCCR 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 20, 243
AflIII ACRYGT 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 2 cut(s) 162, 247
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 4 cut(s) 9, 12, 15, 18
BlsI GCNGC 4 cut(s) 10, 13, 16, 19
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 20, 243
BsaI GGTCTC 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 245
BseGI GGATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 164, 249
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 209, 246
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 164, 249
Bso31I GGTCTC 1 cut(s) 163
BspACI CCGC 4 cut(s) 8, 11, 14, 17
BspANI GGCC 2 cut(s) 164, 249
BspCNI CTCAG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssNI GRCGYC 2 cut(s) 20, 243
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 2 cut(s) 20, 243
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 14, 17, 255
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 164, 249
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 245
CseI GACGC 2 cut(s) 9, 251
CviAII CATG 3 cut(s) 217, 239, 267
CviJI RGCY 3 cut(s) 136, 164, 249
CviKI_1 RGCY 3 cut(s) 136, 164, 249
DdeI CTNAG 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 220, 242, 270
FaiI YATR 5 cut(s) 129, 218, 240, 260, 268
FatI CATG 3 cut(s) 216, 238, 266
Fnu4HI GCNGC 4 cut(s) 9, 12, 15, 18
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 4 cut(s) 9, 12, 15, 18
GluI GCNGC 4 cut(s) 9, 12, 15, 18
HaeIII GGCC 2 cut(s) 164, 249
HapII CCGG 2 cut(s) 209, 246
HgaI GACGC 2 cut(s) 9, 251
Hin1I GRCGYC 2 cut(s) 20, 243
Hin1II CATG 3 cut(s) 220, 242, 270
HpaII CCGG 2 cut(s) 209, 246
HphI GGTGA 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 34, 69, 183
Hpy188III TCNNGA 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 91, 94
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 17, 255
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 2 cut(s) 20, 243
Hsp92II CATG 3 cut(s) 220, 242, 270
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 94, 170, 188, 222, 241, 259
MboII GAAGA 3 cut(s) 18, 53, 110
MnlI CCTC 6 cut(s) 28, 31, 37, 43, 106, 233
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 2 cut(s) 209, 246
MspR9I CCNGG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 14, 17, 255
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 209
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 220, 242, 270
NspI RCATGY 1 cut(s) 220
PceI AGGCCT 1 cut(s) 164
PciI ACATGT 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 247
PkrI GCNGC 4 cut(s) 10, 13, 16, 19
PscI ACATGT 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 4 cut(s) 9, 12, 15, 18
ScrFI CCNGG 1 cut(s) 209
SetI ASST 2 cut(s) 48, 138
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 4 cut(s) 8, 11, 14, 17
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 207
TaqII GACCGA 1 cut(s) 213
TauI GCSGC 4 cut(s) 11, 14, 17, 20
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 18, 75, 116
TspGWI ACGGA 2 cut(s) 116, 137
TspRI CASTG 1 cut(s) 61
XceI RCATGY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.