Rh1CG148800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014873
Physical Location & Seq
Reverse (-)
32739965 .. 32740753
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG148800.1

Sequence Viewer

Length: 282 bp
ATGGCCAGGGATCAGCTCGCTTGCGCCGAACATCGTTGGACGGGTAGATATGAAGCGCATCTAATCTTAACGGTCAACTTACGGTCCCCGGCGCCACCCTCGTCCTCCTCCTCCTGCCGCACCAGATCCCACCCCTCCGGCCACCGCACCACCAGCTCACCTCATACTTCCTCGTATTCACGGTGGCCACACCGCTACTTCATCATCTTCGCCACCATTCCAATTCAATTGGATCAAATTAGAAAAACCCAACCCAAATTTGGTCTGGAGATTTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.76

Weight (kDa)

10.49

Isoelectric Point (pI)

74.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 3 cut(s) 118, 145, 193
AclWI GGATC 3 cut(s) 18, 120, 240
AcoI YGGCCR 3 cut(s) 3, 139, 185
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 2 cut(s) 16, 156
AluI AGCT 2 cut(s) 16, 156
AlwI GGATC 3 cut(s) 18, 120, 240
AoxI GGCC 3 cut(s) 3, 139, 185
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 3 cut(s) 26, 58, 94
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 2 cut(s) 5, 187
BanI GGYRCC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 7, 89
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 86, 93
BmrFI CCNGG 2 cut(s) 7, 89
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 6, 87
BsaXI ACNNNNNCTCC 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 6, 87
BseLI CCNNNNNNNGG 1 cut(s) 260
BseRI GAGGAG 2 cut(s) 97, 100
BshFI GGCC 3 cut(s) 5, 141, 187
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 89, 138
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 3 cut(s) 5, 141, 187
Bsp143I GATC 3 cut(s) 10, 125, 232
BspACI CCGC 3 cut(s) 118, 145, 193
BspANI GGCC 3 cut(s) 5, 141, 187
BspLI GGNNCC 2 cut(s) 86, 93
BspPI GGATC 3 cut(s) 18, 120, 240
BspT107I GGYRCC 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 6, 87
BssMI GATC 3 cut(s) 10, 125, 232
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 3 cut(s) 73, 84, 183
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 18, 22
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 3 cut(s) 26, 58, 94
BstKTI GATC 3 cut(s) 13, 128, 235
BstMBI GATC 3 cut(s) 10, 125, 232
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 5, 87
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 3 cut(s) 5, 141, 187
Cac8I GCNNGC 2 cut(s) 18, 22
CfoI GCGC 3 cut(s) 26, 58, 94
Cfr13I GGNCC 1 cut(s) 84
CviJI RGCY 5 cut(s) 5, 16, 141, 156, 187
CviKI_1 RGCY 5 cut(s) 5, 16, 141, 156, 187
DinI GGCGCC 1 cut(s) 93
DpnI GATC 3 cut(s) 12, 127, 234
DpnII GATC 3 cut(s) 10, 125, 232
EaeI YGGCCR 3 cut(s) 3, 139, 185
Eco47I GGWCC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 5
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FaiI YATR 2 cut(s) 51, 165
FaqI GGGAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 3 cut(s) 25, 57, 93
GluI GCNGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 3 cut(s) 5, 141, 187
HapII CCGG 2 cut(s) 89, 138
HhaI GCGC 3 cut(s) 26, 58, 94
Hin1I GRCGYC 1 cut(s) 92
Hin6I GCGC 3 cut(s) 24, 56, 92
HinP1I GCGC 3 cut(s) 24, 56, 92
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HpaII CCGG 2 cut(s) 89, 138
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 3 cut(s) 73, 84, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 92
HspAI GCGC 3 cut(s) 24, 56, 92
KasI GGCGCC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 10, 125, 232
LpnPI CCDG 7 cut(s) 19, 102, 127, 136, 151, 166, 251
LweI GCATC 1 cut(s) 67
MalI GATC 3 cut(s) 12, 127, 234
MboI GATC 3 cut(s) 10, 125, 232
MboII GAAGA 1 cut(s) 199
MfeI CAATTG 1 cut(s) 227
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 2 cut(s) 5, 187
MluCI AATT 4 cut(s) 222, 227, 237, 257
MluNI TGGCCA 2 cut(s) 5, 187
Mly113I GGCGCC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 7 cut(s) 109, 115, 118, 121, 145, 171, 181
Mox20I TGGCCA 2 cut(s) 5, 187
MscI TGGCCA 2 cut(s) 5, 187
MseI TTAA 1 cut(s) 68
Msp20I TGGCCA 2 cut(s) 5, 187
MspI CCGG 2 cut(s) 89, 138
MspR9I CCNGG 2 cut(s) 7, 89
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 153
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 89
NdeII GATC 3 cut(s) 10, 125, 232
NlaIV GGNNCC 2 cut(s) 86, 93
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PkrI GCNGC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 86, 93
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 125
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 10, 125, 232
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 7, 89
SetI ASST 3 cut(s) 18, 158, 163
SfaNI GCATC 1 cut(s) 67
SfoI GGCGCC 1 cut(s) 93
SinI GGWCC 1 cut(s) 84
Sse9I AATT 4 cut(s) 222, 227, 237, 257
SsiI CCGC 3 cut(s) 118, 145, 193
SspDI GGCGCC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 5, 87
TaaI ACNGT 3 cut(s) 73, 84, 183
TasI AATT 4 cut(s) 222, 227, 237, 257
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 66, 190
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.