Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

56418595 .. 56419293

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCAGGGATCAGCTTGCTTGCGCCGAGTTTACAGGTCACTCGGTTGAGTCAGATGGGAACGAGTTGGGTTTCTCAAGCTGTGGTGCTACGAACAAAAGCAATACTTTGTCTCTTGGGTTACTAATGCTAATACTCAGACCTCGAATCGTGAAAAAGGCCATTGTTGCGGTGGACATTGATAGCACTAAGAAAATCTCTGATACTTTTGAGCAGAGGACTTCAGTGGAGTTACTAGTCAACTTACGGTCCCCGGCGCCACCCTCGTTCTCCTCCTCCTGCCGCACCAGATCCAACCCCTTCGGCCACCGCACCACCAGCTCACCTCATACTTCCTCGTATTCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

116

Amino Acids

12.58

Weight (kDa)

9.3

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	3 cut(s)	170, 283, 310
AclWI	GGATC	2 cut(s)	18, 285
AcoI	YGGCCR	2 cut(s)	3, 304
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	257
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	16, 81, 321
AluI	AGCT	3 cut(s)	16, 81, 321
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	18, 285
AoxI	GGCC	3 cut(s)	3, 159, 304
AspLEI	GCGC	2 cut(s)	26, 259
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	256
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	260
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	7, 254
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	251, 258
BmrFI	CCNGG	2 cut(s)	7, 254
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	6, 252
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	6, 252
BseMII	CTCAG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	262, 265
BshFI	GGCC	3 cut(s)	5, 161, 306
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	5, 161, 306
Bsp143I	GATC	2 cut(s)	10, 290
BspACI	CCGC	3 cut(s)	170, 283, 310
BspANI	GGCC	3 cut(s)	5, 161, 306
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	251, 258
BspPI	GGATC	2 cut(s)	18, 285
BspT107I	GGYRCC	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	6, 252
BssMI	GATC	2 cut(s)	10, 290
BssNI	GRCGYC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	249, 348
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	2 cut(s)	137, 189
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	26, 259
BstKTI	GATC	2 cut(s)	13, 293
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	10, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 318
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 252
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	5, 161, 306
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	18, 22
CfoI	GCGC	2 cut(s)	26, 259
Cfr13I	GGNCC	1 cut(s)	249
CviJI	RGCY	6 cut(s)	5, 16, 81, 161, 306, 321
CviKI_1	RGCY	6 cut(s)	5, 16, 81, 161, 306, 321
DdeI	CTNAG	2 cut(s)	137, 189
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	2 cut(s)	12, 292
DpnII	GATC	2 cut(s)	10, 290
EaeI	YGGCCR	2 cut(s)	3, 304
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
FaiI	YATR	1 cut(s)	330
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	25, 258
GluI	GCNGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	5, 161, 306
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	2 cut(s)	26, 259
Hin1I	GRCGYC	1 cut(s)	257
Hin6I	GCGC	2 cut(s)	24, 257
HinP1I	GCGC	2 cut(s)	24, 257
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	50, 147
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	33, 175, 241
Hpy188I	TCNGA	3 cut(s)	55, 140, 202
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	3 cut(s)	33, 175, 241
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	249, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 318
HpyF3I	CTNAG	2 cut(s)	137, 189
Hsp92I	GRCGYC	1 cut(s)	257
HspAI	GCGC	2 cut(s)	24, 257
KasI	GGCGCC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	10, 290
LpnPI	CCDG	6 cut(s)	19, 21, 267, 292, 301, 331
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	38, 120, 231
MalI	GATC	2 cut(s)	12, 292
MboI	GATC	2 cut(s)	10, 290
MflI	RGATCY	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	7 cut(s)	153, 210, 274, 283, 286, 336, 346
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	7, 254
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	167, 318
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	2 cut(s)	10, 290
NlaIV	GGNNCC	2 cut(s)	251, 258
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	251, 258
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	290
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	10, 290
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	7, 254
SetI	ASST	6 cut(s)	18, 40, 83, 145, 323, 328
SfoI	GGCGCC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SpeI	ACTAGT	1 cut(s)	235
SsiI	CCGC	3 cut(s)	170, 283, 310
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	5, 252
TaaI	ACNGT	2 cut(s)	249, 348
TaqI	TCGA	1 cut(s)	145
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.