RLG00000035509

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004648
Physical Location & Seq
Forward (+)
67840580 .. 67848442
7863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035509

Sequence Viewer

Length: 3069 bp
ATGGAAGACGAACAGTCCGAAACGCCAGCCTCACTCATTCCCCCACTCCCAAGAGACTCCCGCGGCTCCCTCGAAGTCTTCAACCCCTCCACCTTCTCCTCCTCCACCCGACCCGCCAGCCCGCCAACCTTCCGACCTTCCCAACCCGCCTCCTGGAATACCTGGATCGACCCACGTGACCCCAAACCCGACCCGCCACCCAACGCCGCCTCCAAGTCCGGCAGCGACGATGCCACCATCACCTCATGGATGGCCCTCAAGGACTTCCCCCCAACTCCACCGCCGCCTTCCAAACAGTCCCAGAAATCCCCGCCGTTCATCCAGAAGACCATCTCCGCCTCGGTCAACGACAAGTCAACGCCGGAGCCCAGCGACGCCGCGCAGAGAGCCGCGGAGTGGGGATTGGTTCTGAAGACGGACACGGAGACGGGGAAGCCGCAGGGAGTGACGACCCGAAGCTCGGGCGGACCCGAAGACCCGAGCCACAAACCGGGTACTTCCAGAAGAAACTCGAACAACTCGGTCCGGAGCTCCGGGGAGTTGTCCGACGACGGCGGCGGAGGAGGAGGAGGAGGAGGAAAAGGGTTTCCGAGAGCTTCGGAGGACTTGAAGAACGTGCTGTCGACGTTTCAGCAGACGTTCGTGGTGTCGGATGCTACCAAACCCGATTACCCGATCATGTACGCCAGCGCCGGGTTTTTCAAGATGACCGGGTACACCTCCAAGGAGGTCATCGGCAGGAACTGCCGGTTTTTGCAGGGAGCGGATACGGACCCGGACGACGTGGCGCAGCTGAGGGAGGCTTTGCAGAAGAACACGAGCTATTGCGGTCGGTTGTTGAATTATAAGAAAGATGGGACCCCTTTTTGGAATTTACTTACTATTGCTCCTATCAAGGACGAAACTGGGAAGGTCCTCAAATTCATCGGAATGCAAGTGGAGGTGAGCAAGCACACTGAGGGGTCTAAGGATAAGATGCTGCGCCCCAATGGATTGCCTGAGTCTCTCATTCGATATGATGCTCGCCAGAAGGAGATGGCTACACATTCAGTAACTGAGCTTGTGCAGGCAGTGAGGAGACCGAGGTCACTTAGTGAATCGACAAATCGTCCCTTTAGAAAGTCCGGAGGTGGCGGTAGGGGAGAGGAGGTAATAGAAGCTCTTGCGAGGAGAAACTCCGAGAGTTTGCCTAGGAGAAACTCAGAGAATGTGGCACCACCTAGACGTAACTCACTTGGGGATGCTAAAATCTCAATGCAGTGTATCAATGAGGTTCCTGAAAAGAAACAGAAAAAATCTAGACGGCGCTCTTTCATGGGGGTTATTCGGAAAAGTCAAACTCAAAGCCAACCCGATGATGATACATTTGACAACTTTGAAGATTCTGAGGATGTCCCTGATGACAGTGACAATGATGAGAGACCTATGAGTCATGAAGATAAAGCGAGGAAGAAGGAAATGAGGAAGGGTATGGATCTTGCTACGACGCTGGAACGTATAGAGAAAAACTTTGTCATTACTGATCCAAGGCTGCCTGATAATCCCATTATATTTGCATCCGACAGCTTCTTAGAGCTAACAGAGTACAGCCGCGAAGAAATATTGGGAAGAAATTGCAGATTCCTTCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATAAGAGAGGCAATTGACAACCAGACTGACGTGACTGTACAACTCATCAATTACACGAAAAGCGGCAAAAAGTTCTGGAATGTCTTTCATCTACAGCCTATGCGTGATCAAAAGGGAGAAGTACAGTATTTTATTGGAGTACAACTTGATGGCAGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGCAAAAGAGAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCAGATGCCAATATGAAACCAGAAGATTTATGGATGAATCATTCCAAGGTCGTTCATCCAAAGCCTCATAGAAGGGACAGCCCCCCTTGGCGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAGGATTGAAACATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTCCAATTGTGTGGAACTGATCAGTACTACGCCATGAAGGCTATGGATAAGGGTATCATGCTCAATAGGAACAAGGTGCACAGAGCTTGTGCAGAGAGAGAAATCCTCGACATGTTGGATCACCCTTTTCTTCCTGCATTGTATGCTTCGTTTCAGACCAAAACACATGTTTGCCTGATCACTGATTACTACCCTGGTGGAGAACTCTTCCTCCTCTTGGACAGCCAACCAACGAAGGTCCTGAAGGAAGATTCAGTGAGATTTTATGTTGCAGAGGTAGTTGTTGCCTTGGAGTATCTTCACTGTCAAGGGATAATTTACAGGGATTTGAAGCCTGAAAATGTTTTACTTCAGAGCAGTGGGCACGTAACCCTGACCGATTTTGATTTATCGTGTTTGACATCTTGCAAACCACAGCTTTTAATTCCTACCATAAACGAAAAGAAAAGGCATCACAAAGGTCAACAGAATCCAATCTTCATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATCGCTCCGGAAATCATAACTGGAGCTGGCCATTCTAGTGCAGTAGACTGGTGGGCTCTTGGTATTCTTATATATGAAATGCTCTATGGATATACACCATTTAGGGGAAAGACAAGGCAAAAGACGTTCGCCAATATTCTTCACAAGGATATCAAATTTCCAAGAAGTATACCGGCAAGTCTCCAAGCAAAACAGTTAATGTATCGGTTGTTGCATCGTGATCCCAAAAACAGATTGGGGTCTCAGGAAGGGGCAAACGAAATTAAGCGTCACCCTTTCTTTCGGGGTGTCAACTGGGCTCTAGTTCGCTGCATGAACCCTCCTCAACTCGATGCTCCTCTCTTCGGGACAACTGAAGCTGAAAAGGGTGCTAAGCTTGTGGATCCTGAGATGCAAGATCTACAAACAAATATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

1023

Amino Acids

114.41

Weight (kDa)

7.87

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 220 - 316 3.3e-20 PAS domain
PAS PF00989 225 - 311 7.4e-08 PAS fold
PAS_3 PF08447 226 - 310 2.5e-07 PAS fold
PAS_9 PF13426 512 - 604 8.9e-20 PAS domain
PAS PF00989 515 - 604 4.4e-07 PAS fold
PAS_3 PF08447 516 - 601 3e-07 PAS fold
Pkinase PF00069 692 - 977 2.8e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 693 - 839 1.3e-16 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 882 - 962 1.5e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AasI GACNNNNNNGTC 1 cut(s) 1428
AccB1I GGYRCC 1 cut(s) 1213
AccBSI CCGCTC 1 cut(s) 764
AccI GTMKAC 3 cut(s) 623, 2694, 2818
AccII CGCG 4 cut(s) 63, 380, 392, 1593
AccIII TCCGGA 3 cut(s) 525, 1124, 2656
AclWI GGATC 9 cut(s) 173, 1482, 1517, 1637, 2098, 2244, 2864, 3026, 3039
AcoI YGGCCR 1 cut(s) 2677
AcsI RAATTY 4 cut(s) 871, 920, 2623, 2804
AcuI CTGAAG 5 cut(s) 431, 1872, 2381, 2453, 3024
AcvI CACGTG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 375
AdeI CACNNNGTG 1 cut(s) 1094
AfaI GTAC 9 cut(s) 496, 683, 716, 1586, 1701, 1785, 1803, 2144, 2648
AfiI CCNNNNNNNGG 9 cut(s) 153, 396, 460, 490, 693, 867, 2335, 2753, 2993
AflIII ACRYGT 2 cut(s) 2229, 2284
AgsI TTSAA 9 cut(s) 82, 610, 703, 841, 1379, 1628, 2027, 2062, 2449
AhdI GACNNNNNGTC 2 cut(s) 13, 1107
AjiI CACGTC 2 cut(s) 784, 1693
AjnI CCWGG 3 cut(s) 152, 161, 2311
AloI GAACNNNNNNTCC 2 cut(s) 2313, 2345
Alw21I GWGCWC 2 cut(s) 533, 2199
Alw26I GTCTC 9 cut(s) 48, 419, 1008, 1072, 1414, 1631, 1883, 2834, 2895
Alw44I GTGCAC 1 cut(s) 2195
AlwI GGATC 9 cut(s) 173, 1482, 1517, 1637, 2098, 2244, 2864, 3026, 3039
AlwNI CAGNNNCTG 3 cut(s) 744, 1055, 1652
Ama87I CYCGRG 2 cut(s) 460, 478
Aor13HI TCCGGA 3 cut(s) 525, 1124, 2656
AoxI GGCC 2 cut(s) 252, 2677
ApaLI GTGCAC 1 cut(s) 2195
ApeKI GCWGC 6 cut(s) 222, 790, 979, 1531, 1913, 2958
ApoI RAATTY 4 cut(s) 871, 920, 2623, 2804
AspA2I CCTAGG 1 cut(s) 1190
AspLEI GCGC 5 cut(s) 382, 692, 790, 984, 1308
AspS9I GGNCC 9 cut(s) 253, 467, 523, 772, 858, 913, 1631, 2119, 2356
AsuC2I CCSGG 5 cut(s) 492, 535, 694, 712, 776
AsuHPI GGTGA 5 cut(s) 232, 955, 2108, 2231, 2912
AvaI CYCGRG 2 cut(s) 460, 478
AvaII GGWCC 8 cut(s) 467, 523, 772, 858, 913, 1631, 2119, 2356
AvrII CCTAGG 1 cut(s) 1190
BaeGI GKGCMC 2 cut(s) 2199, 2484
BalI TGGCCA 1 cut(s) 2679
BamHI GGATCC 1 cut(s) 3031
BanI GGYRCC 1 cut(s) 1213
BanII GRGCYC 4 cut(s) 369, 533, 2707, 2950
BauI CACGAG 1 cut(s) 817
BbrPI CACGTG 1 cut(s) 176
BbsI GAAGAC 5 cut(s) 12, 70, 332, 419, 480
Bbv12I GWGCWC 2 cut(s) 533, 2199
BbvCI CCTCAGC 1 cut(s) 794
BbvI GCAGC 6 cut(s) 234, 802, 966, 1518, 1925, 2945
BccI CCATC 6 cut(s) 244, 245, 338, 848, 1030, 1805
BceAI ACGGC 3 cut(s) 298, 568, 1319
BciT130I CCWGG 3 cut(s) 154, 163, 2313
BciVI GTATCC 1 cut(s) 760
BclI TGATCA 3 cut(s) 1768, 2137, 2295
BcnI CCSGG 5 cut(s) 492, 535, 694, 712, 776
BcoDI GTCTC 9 cut(s) 48, 419, 1008, 1072, 1414, 1631, 1883, 2834, 2895
BfaI CTAG 6 cut(s) 1191, 1221, 1299, 2036, 2685, 2951
BfmI CTRYAG 2 cut(s) 1754, 1893
BfoI RGCGCY 2 cut(s) 693, 1309
BfuI GTATCC 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 2156
BglII AGATCT 1 cut(s) 3046
BlnI CCTAGG 1 cut(s) 1190
BlpI GCTNAGC 1 cut(s) 3021
BmcAI AGTACT 1 cut(s) 2144
Bme1390I CCNGG 8 cut(s) 154, 163, 492, 535, 694, 712, 776, 2313
Bme18I GGWCC 8 cut(s) 467, 523, 772, 858, 913, 1631, 2119, 2356
BmeRI GACNNNNNGTC 2 cut(s) 13, 1107
BmeT110I CYCGRG 2 cut(s) 460, 478
BmgBI CACGTC 2 cut(s) 784, 1693
BmgT120I GGNCC 9 cut(s) 253, 467, 523, 772, 858, 913, 1631, 2119, 2356
BmiI GGNNCC 9 cut(s) 67, 366, 469, 774, 859, 860, 1215, 1275, 3033
BmrFI CCNGG 8 cut(s) 154, 163, 492, 535, 694, 712, 776, 2313
BmrI ACTGGG 2 cut(s) 915, 2953
BmuI ACTGGG 2 cut(s) 915, 2953
BoxI GACNNNNGTC 1 cut(s) 1084
BpiI GAAGAC 5 cut(s) 12, 70, 332, 419, 480
BplI GAGNNNNNCTC 2 cut(s) 2208, 2240
BpmI CTGGAG 1 cut(s) 2691
Bpu10I CCTNAGC 1 cut(s) 794
Bpu1102I GCTNAGC 1 cut(s) 3021
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 5 cut(s) 492, 535, 694, 712, 776
BsaAI YACGTR 2 cut(s) 176, 2485
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 3 cut(s) 1072, 1414, 2895
BsaWI WCCGGW 3 cut(s) 525, 1124, 2656
BsaXI ACNNNNNCTCC 8 cut(s) 194, 224, 871, 901, 1134, 1164, 2313, 2343
Bsc4I CCNNNNNNNGG 9 cut(s) 153, 396, 460, 490, 693, 867, 2335, 2753, 2993
Bse118I RCCGGY 2 cut(s) 747, 2821
Bse1I ACTGG 6 cut(s) 910, 1884, 2107, 2674, 2702, 2948
BseAI TCCGGA 3 cut(s) 525, 1124, 2656
BseBI CCWGG 3 cut(s) 154, 163, 2313
BseGI GGATG 8 cut(s) 255, 318, 658, 1246, 1396, 1556, 1965, 1981
BseLI CCNNNNNNNGG 9 cut(s) 153, 396, 460, 490, 693, 867, 2335, 2753, 2993
BseMII CTCAG 9 cut(s) 785, 948, 990, 1047, 1215, 1377, 1626, 2906, 3027
BseNI ACTGG 6 cut(s) 910, 1884, 2107, 2674, 2702, 2948
BseSI GKGCMC 2 cut(s) 2199, 2484
BseXI GCAGC 6 cut(s) 234, 802, 966, 1518, 1925, 2945
BseYI CCCAGC 1 cut(s) 368
BsgI GTGCAG 3 cut(s) 1085, 2229, 2709
Bsh1236I CGCG 4 cut(s) 63, 380, 392, 1593
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 2 cut(s) 254, 2679
BshNI GGYRCC 1 cut(s) 1213
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 2 cut(s) 533, 2199
BsiHKCI CYCGRG 2 cut(s) 460, 478
BslFI GGGAC 6 cut(s) 283, 871, 1095, 1379, 2015, 3010
BslI CCNNNNNNNGG 9 cut(s) 153, 396, 460, 490, 693, 867, 2335, 2753, 2993
BsmAI GTCTC 9 cut(s) 48, 419, 1008, 1072, 1414, 1631, 1883, 2834, 2895
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 6 cut(s) 283, 871, 1095, 1379, 2015, 3010
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 2 cut(s) 254, 2679
Bso31I GGTCTC 3 cut(s) 1072, 1414, 2895
BsoBI CYCGRG 2 cut(s) 460, 478
Bsp1286I GDGCHC 6 cut(s) 369, 533, 2199, 2484, 2707, 2950
Bsp13I TCCGGA 3 cut(s) 525, 1124, 2656
Bsp1407I TGTACA 1 cut(s) 1699
Bsp1720I GCTNAGC 1 cut(s) 3021
BspANI GGCC 2 cut(s) 254, 2679
BspCNI CTCAG 9 cut(s) 786, 949, 991, 1048, 1214, 1378, 1627, 2905, 3028
BspEI TCCGGA 3 cut(s) 525, 1124, 2656
BspFNI CGCG 4 cut(s) 63, 380, 392, 1593
BspHI TCATGA 1 cut(s) 1432
BspLI GGNNCC 9 cut(s) 67, 366, 469, 774, 859, 860, 1215, 1275, 3033
BspMAI CTGCAG 1 cut(s) 1897
BspPI GGATC 9 cut(s) 173, 1482, 1517, 1637, 2098, 2244, 2864, 3026, 3039
BspT107I GGYRCC 1 cut(s) 1213
BspTNI GGTCTC 3 cut(s) 1072, 1414, 2895
BsrBI CCGCTC 1 cut(s) 764
BsrFI RCCGGY 2 cut(s) 747, 2821
BsrGI TGTACA 1 cut(s) 1699
BsrI ACTGG 6 cut(s) 910, 1884, 2107, 2674, 2702, 2948
BssAI RCCGGY 2 cut(s) 747, 2821
BssNAI GTATAC 1 cut(s) 2819
BssNI GRCGYC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 817
BssT1I CCWWGG 7 cut(s) 723, 1190, 1526, 1971, 2012, 2085, 2406
Bst1107I GTATAC 1 cut(s) 2819
Bst2BI CACGAG 1 cut(s) 817
Bst2UI CCWGG 3 cut(s) 154, 163, 2313
Bst4CI ACNGT 9 cut(s) 15, 297, 1406, 1654, 1699, 1788, 2042, 2423, 2844
Bst6I CTCTTC 3 cut(s) 2330, 2637, 2996
BstACI GRCGYC 1 cut(s) 375
BstAPI GCANNNNNTGC 2 cut(s) 744, 2261
BstAUI TGTACA 1 cut(s) 1699
BstBAI YACGTR 2 cut(s) 176, 2485
BstC8I GCNNGC 9 cut(s) 27, 118, 122, 688, 950, 1024, 1068, 2019, 2677
BstDSI CCRYGG 2 cut(s) 61, 390
BstF5I GGATG 8 cut(s) 255, 318, 658, 1246, 1396, 1556, 1965, 1981
BstFNI CGCG 4 cut(s) 63, 380, 392, 1593
BstH2I RGCGCY 2 cut(s) 693, 1309
BstHHI GCGC 5 cut(s) 382, 692, 790, 984, 1308
BstMAI GTCTC 9 cut(s) 48, 419, 1008, 1072, 1414, 1631, 1883, 2834, 2895
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 6 cut(s) 386, 744, 1828, 2080, 2156, 2261
BstNI CCWGG 3 cut(s) 154, 163, 2313
BstNSI RCATGY 2 cut(s) 2233, 2288
BstPAI GACNNNNGTC 1 cut(s) 1084
BstSCI CCNGG 8 cut(s) 152, 161, 490, 533, 692, 710, 774, 2311
BstSFI CTRYAG 2 cut(s) 1754, 1893
BstSLI GKGCMC 2 cut(s) 2199, 2484
BstUI CGCG 4 cut(s) 63, 380, 392, 1593
BstV1I GCAGC 6 cut(s) 234, 802, 966, 1518, 1925, 2945
BstV2I GAAGAC 5 cut(s) 12, 70, 332, 419, 480
BstX2I RGATCY 4 cut(s) 1474, 2090, 3031, 3046
BstXI CCANNNNNNTGG 1 cut(s) 2129
BstYI RGATCY 4 cut(s) 1474, 2090, 3031, 3046
BstZ17I GTATAC 1 cut(s) 2819
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 2 cut(s) 254, 2679
BtgI CCRYGG 2 cut(s) 61, 390
BtgZI GCGATG 1 cut(s) 2635
BtrI CACGTC 2 cut(s) 784, 1693
BtsCI GGATG 8 cut(s) 255, 318, 658, 1246, 1396, 1556, 1965, 1981
BtsI GCAGTG 4 cut(s) 1077, 1265, 2113, 2482
Cac8I GCNNGC 9 cut(s) 27, 118, 122, 688, 950, 1024, 1068, 2019, 2677
CaiI CAGNNNCTG 3 cut(s) 744, 1055, 1652
CciI TCATGA 1 cut(s) 1432
CfoI GCGC 5 cut(s) 382, 692, 790, 984, 1308
Cfr10I RCCGGY 2 cut(s) 747, 2821
Cfr13I GGNCC 9 cut(s) 253, 467, 523, 772, 858, 913, 1631, 2119, 2356
Cfr42I CCGCGG 2 cut(s) 64, 393
CpoI CGGWCCG 1 cut(s) 523
CseI GACGC 3 cut(s) 383, 1495, 2906
Csp6I GTAC 9 cut(s) 495, 682, 715, 1585, 1700, 1784, 1802, 2143, 2647
CspI CGGWCCG 1 cut(s) 523
CviQI GTAC 9 cut(s) 495, 682, 715, 1585, 1700, 1784, 1802, 2143, 2647
DraIII CACNNNGTG 1 cut(s) 1094
DrdI GACNNNNNNGTC 1 cut(s) 1428
DriI GACNNNNNGTC 2 cut(s) 13, 1107
DseDI GACNNNNNNGTC 1 cut(s) 1428
EaeI YGGCCR 1 cut(s) 2677
Eam1104I CTCTTC 3 cut(s) 2330, 2637, 2996
Eam1105I GACNNNNNGTC 2 cut(s) 13, 1107
EarI CTCTTC 3 cut(s) 2330, 2637, 2996
EciI GGCGGA 3 cut(s) 325, 480, 573
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 7 cut(s) 723, 1190, 1526, 1971, 2012, 2085, 2406
Eco24I GRGCYC 4 cut(s) 369, 533, 2707, 2950
Eco31I GGTCTC 3 cut(s) 1072, 1414, 2895
Eco32I GATATC 1 cut(s) 2800
Eco47I GGWCC 8 cut(s) 467, 523, 772, 858, 913, 1631, 2119, 2356
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 5 cut(s) 431, 1872, 2381, 2453, 3024
Eco72I CACGTG 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 460, 478
EcoICRI GAGCTC 1 cut(s) 531
EcoO109I RGGNCCY 4 cut(s) 858, 913, 1631, 2356
EcoRII CCWGG 3 cut(s) 152, 161, 2311
EcoRV GATATC 1 cut(s) 2800
EcoT14I CCWWGG 7 cut(s) 723, 1190, 1526, 1971, 2012, 2085, 2406
EcoT38I GRGCYC 4 cut(s) 369, 533, 2707, 2950
ErhI CCWWGG 7 cut(s) 723, 1190, 1526, 1971, 2012, 2085, 2406
Esp3I CGTCTC 1 cut(s) 419
FaqI GGGAC 6 cut(s) 283, 871, 1095, 1379, 2015, 3010
FauI CCCGC 6 cut(s) 68, 121, 129, 154, 201, 318
FbaI TGATCA 3 cut(s) 1768, 2137, 2295
FblI GTMKAC 3 cut(s) 623, 2694, 2818
FokI GGATG 8 cut(s) 262, 305, 665, 1253, 1403, 1543, 1968, 1972
FriOI GRGCYC 4 cut(s) 369, 533, 2707, 2950
FspBI CTAG 6 cut(s) 1191, 1221, 1299, 2036, 2685, 2951
GlaI GCGC 5 cut(s) 381, 691, 789, 983, 1307
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 2691
HaeII RGCGCY 2 cut(s) 693, 1309
HaeIII GGCC 2 cut(s) 254, 2679
HgaI GACGC 3 cut(s) 383, 1495, 2906
HhaI GCGC 5 cut(s) 382, 692, 790, 984, 1308
Hin1I GRCGYC 1 cut(s) 375
Hin6I GCGC 5 cut(s) 380, 690, 788, 982, 1306
HinP1I GCGC 5 cut(s) 380, 690, 788, 982, 1306
HincII GTYRAC 5 cut(s) 346, 357, 624, 2582, 2941
HindII GTYRAC 5 cut(s) 346, 357, 624, 2582, 2941
HindIII AAGCTT 1 cut(s) 3023
HphI GGTGA 5 cut(s) 232, 955, 2108, 2231, 2912
Hpy166II GTNNAC 9 cut(s) 346, 357, 624, 717, 2197, 2582, 2695, 2819, 2941
Hpy8I GTNNAC 9 cut(s) 346, 357, 624, 717, 2197, 2582, 2695, 2819, 2941
Hpy99I CGWCG 7 cut(s) 230, 377, 551, 554, 628, 785, 1489
HpyCH4III ACNGT 9 cut(s) 15, 297, 1406, 1654, 1699, 1788, 2042, 2423, 2844
HpyF10VI GCNNNNNNNGC 6 cut(s) 386, 744, 1828, 2080, 2156, 2261
Hsp92I GRCGYC 1 cut(s) 375
HspAI GCGC 5 cut(s) 380, 690, 788, 982, 1306
KflI GGGWCCC 1 cut(s) 858
Kpn2I TCCGGA 3 cut(s) 525, 1124, 2656
Ksp22I TGATCA 3 cut(s) 1768, 2137, 2295
KspI CCGCGG 2 cut(s) 64, 393
LmnI GCTCC 9 cut(s) 71, 364, 528, 536, 761, 892, 2659, 2672, 2989
Lsp1109I GCAGC 6 cut(s) 234, 802, 966, 1518, 1925, 2945
MaeI CTAG 6 cut(s) 1191, 1221, 1299, 2036, 2685, 2951
MbiI CCGCTC 1 cut(s) 764
MfeI CAATTG 2 cut(s) 1674, 2123
MflI RGATCY 4 cut(s) 1474, 2090, 3031, 3046
MhlI GDGCHC 6 cut(s) 369, 533, 2199, 2484, 2707, 2950
MlsI TGGCCA 1 cut(s) 2679
MluNI TGGCCA 1 cut(s) 2679
MlyI GAGTC 3 cut(s) 50, 1010, 1438
MmeI TCCRAC 5 cut(s) 157, 570, 630, 1584, 2214
Mox20I TGGCCA 1 cut(s) 2679
MroI TCCGGA 3 cut(s) 525, 1124, 2656
MscI TGGCCA 1 cut(s) 2679
MseI TTAA 5 cut(s) 1899, 2070, 2540, 2846, 2913
MslI CAYNNNNRTG 2 cut(s) 929, 2685
Msp20I TGGCCA 1 cut(s) 2679
MspA1I CMGCKG 3 cut(s) 63, 392, 793
MspR9I CCNGG 8 cut(s) 154, 163, 492, 535, 694, 712, 776, 2313
MunI CAATTG 2 cut(s) 1674, 2123
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 3 cut(s) 154, 163, 2313
MvnI CGCG 4 cut(s) 63, 380, 392, 1593
MwoI GCNNNNNNNGC 6 cut(s) 386, 744, 1828, 2080, 2156, 2261
NciI CCSGG 5 cut(s) 492, 535, 694, 712, 776
NlaIV GGNNCC 9 cut(s) 67, 366, 469, 774, 859, 860, 1215, 1275, 3033
NmuCI GTSAC 6 cut(s) 176, 445, 1086, 1406, 1693, 2918
NspI RCATGY 2 cut(s) 2233, 2288
PagI TCATGA 1 cut(s) 1432
PciI ACATGT 2 cut(s) 2229, 2284
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 1 cut(s) 936
PfeI GAWTC 7 cut(s) 1097, 1382, 1620, 1963, 2032, 2369, 2587
PfoI TCCNGGA 1 cut(s) 152
PleI GAGTC 3 cut(s) 50, 1009, 1437
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
PpsI GAGTC 3 cut(s) 50, 1009, 1437
Ppu21I YACGTR 2 cut(s) 176, 2485
PpuMI RGGWCCY 4 cut(s) 858, 913, 1631, 2356
PscI ACATGT 2 cut(s) 2229, 2284
PshAI GACNNNNGTC 1 cut(s) 1084
PsiI TTATAA 1 cut(s) 846
Psp124BI GAGCTC 1 cut(s) 533
Psp5II RGGWCCY 4 cut(s) 858, 913, 1631, 2356
Psp6I CCWGG 3 cut(s) 152, 161, 2311
PspCI CACGTG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 3 cut(s) 152, 161, 2311
PspN4I GGNNCC 9 cut(s) 67, 366, 469, 774, 859, 860, 1215, 1275, 3033
PspPI GGNCC 9 cut(s) 253, 467, 523, 772, 858, 913, 1631, 2119, 2356
PspPPI RGGWCCY 4 cut(s) 858, 913, 1631, 2356
PstI CTGCAG 1 cut(s) 1897
PstNI CAGNNNCTG 3 cut(s) 744, 1055, 1652
PsuI RGATCY 4 cut(s) 1474, 2090, 3031, 3046
PvuII CAGCTG 1 cut(s) 793
RsaI GTAC 9 cut(s) 496, 683, 716, 1586, 1701, 1785, 1803, 2144, 2648
RsaNI GTAC 9 cut(s) 495, 682, 715, 1585, 1700, 1784, 1802, 2143, 2647
RseI CAYNNNNRTG 2 cut(s) 929, 2685
Rsr2I CGGWCCG 1 cut(s) 523
RsrII CGGWCCG 1 cut(s) 523
SacI GAGCTC 1 cut(s) 533
SacII CCGCGG 2 cut(s) 64, 393
SalI GTCGAC 1 cut(s) 622
SaqAI TTAA 5 cut(s) 1899, 2070, 2540, 2846, 2913
Sau96I GGNCC 9 cut(s) 253, 467, 523, 772, 858, 913, 1631, 2119, 2356
ScaI AGTACT 1 cut(s) 2144
SchI GAGTC 3 cut(s) 50, 1010, 1438
ScrFI CCNGG 8 cut(s) 154, 163, 492, 535, 694, 712, 776, 2313
SduI GDGCHC 6 cut(s) 369, 533, 2199, 2484, 2707, 2950
SfcI CTRYAG 2 cut(s) 1754, 1893
Sfr303I CCGCGG 2 cut(s) 64, 393
SgrBI CCGCGG 2 cut(s) 64, 393
SinI GGWCC 8 cut(s) 467, 523, 772, 858, 913, 1631, 2119, 2356
SmiMI CAYNNNNRTG 2 cut(s) 929, 2685
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SspI AATATT 3 cut(s) 1602, 2785, 3061
SspMI CTAG 6 cut(s) 1191, 1221, 1299, 2036, 2685, 2951
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 8 cut(s) 152, 161, 490, 533, 692, 710, 774, 2311
StyI CCWWGG 7 cut(s) 723, 1190, 1526, 1971, 2012, 2085, 2406
TaaI ACNGT 9 cut(s) 15, 297, 1406, 1654, 1699, 1788, 2042, 2423, 2844
TaqI TCGA 8 cut(s) 72, 168, 512, 623, 1012, 1100, 2226, 2979
TaqII GACCGA 4 cut(s) 331, 511, 1096, 2510
TatI WGTACW 6 cut(s) 1584, 1699, 1783, 1801, 2142, 2646
TauI GCSGC 9 cut(s) 66, 209, 286, 380, 392, 439, 558, 1593, 1728
TfiI GAWTC 7 cut(s) 1097, 1382, 1620, 1963, 2032, 2369, 2587
Tru1I TTAA 5 cut(s) 1899, 2070, 2540, 2846, 2913
Tru9I TTAA 5 cut(s) 1899, 2070, 2540, 2846, 2913
TseFI GTSAC 6 cut(s) 176, 445, 1086, 1406, 1693, 2918
TseI GCWGC 6 cut(s) 222, 790, 979, 1531, 1913, 2958
Tsp45I GTSAC 6 cut(s) 176, 445, 1086, 1406, 1693, 2918
TspGWI ACGGA 4 cut(s) 431, 437, 785, 2654
VneI GTGCAC 1 cut(s) 2195
VpaK11BI GGWCC 8 cut(s) 467, 523, 772, 858, 913, 1631, 2119, 2356
XapI RAATTY 4 cut(s) 871, 920, 2623, 2804
XbaI TCTAGA 2 cut(s) 1298, 2035
XceI RCATGY 2 cut(s) 2233, 2288
XcmI CCANNNNNNNNNTGG 3 cut(s) 1953, 2158, 2881
XmaJI CCTAGG 1 cut(s) 1190
XmiI GTMKAC 3 cut(s) 623, 2694, 2818
XspI CTAG 6 cut(s) 1191, 1221, 1299, 2036, 2685, 2951
ZrmI AGTACT 1 cut(s) 2144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.