Rmu_co8243653.1_g000001

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8243653.1
OG0004648
Physical Location & Seq
Reverse (-)
1 .. 777
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8243653.1_g000001.1.cds

Sequence Viewer

Length: 548 bp
gcgcagagggccgccgagtggggattggttctgaagacggacacggagacggggaggccgcagggagtgaccacccggaactcgggcggacccgaagacccgagccacaaaccgggtacctccagaagaaactccaacaactcggtccggagctccggggagttgtccgacgacggcggtggcggaggaggaggagggaaagggtttccgagagcttcggaggacttgaagaacgtgctgtcgacgtttcagcagacgttcgtggtgtcggatgctaccaaacccgattacccgatcatgtacgccagcgccgggtttttcaagatgaccgggtacacctccaaggaggtcatcggcaggaactgccggtttttgcagggagcggatacggacccggacgacgtggcgcagctgagggaggctttgcagaagaacacgagctattgcggtcggttgttgaattataagaaagatgggacccctttttggaatttacttactattgctcctatcaaggacgaaactgggaaggtcctcaaattcattgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

183

Amino Acids

19.71

Weight (kDa)

8.86

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 7 cut(s) 12, 59, 87, 177, 183, 383, 447
AcsI RAATTY 2 cut(s) 490, 539
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 118, 302, 335
AfiI CCNNNNNNNGG 5 cut(s) 18, 82, 112, 312, 486
AgsI TTSAA 3 cut(s) 229, 322, 460
AjiI CACGTC 1 cut(s) 403
AluBI AGCT 4 cut(s) 153, 215, 412, 441
AluI AGCT 4 cut(s) 153, 215, 412, 441
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 363
Ama87I CYCGRG 2 cut(s) 82, 100
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 2 cut(s) 9, 56
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 2 cut(s) 490, 539
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 3 cut(s) 4, 311, 409
AspS9I GGNCC 6 cut(s) 9, 89, 145, 391, 477, 532
AsuC2I CCSGG 6 cut(s) 76, 114, 157, 313, 331, 395
AvaI CYCGRG 2 cut(s) 82, 100
AvaII GGWCC 5 cut(s) 89, 145, 391, 477, 532
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 155
BauI CACGAG 1 cut(s) 436
BbsI GAAGAC 2 cut(s) 41, 102
Bbv12I GWGCWC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 467
BceAI ACGGC 1 cut(s) 190
BciVI GTATCC 1 cut(s) 379
BcnI CCSGG 6 cut(s) 76, 114, 157, 313, 331, 395
BcoDI GTCTC 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 312
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 3 cut(s) 12, 59, 410
BlsI GCNGC 3 cut(s) 13, 60, 411
Bme1390I CCNGG 6 cut(s) 76, 114, 157, 313, 331, 395
Bme18I GGWCC 5 cut(s) 89, 145, 391, 477, 532
BmeT110I CYCGRG 2 cut(s) 82, 100
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 6 cut(s) 9, 89, 145, 391, 477, 532
BmiI GGNNCC 5 cut(s) 91, 118, 393, 478, 479
BmrFI CCNGG 6 cut(s) 76, 114, 157, 313, 331, 395
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 41, 102
BpmI CTGGAG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 413
BpuMI CCSGG 6 cut(s) 76, 114, 157, 313, 331, 395
BsaJI CCNNGG 2 cut(s) 156, 342
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 82, 112, 312, 486
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 529
BseAI TCCGGA 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 156, 342
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 5 cut(s) 18, 82, 112, 312, 486
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 3 cut(s) 201, 204, 207
BseXI GCAGC 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 11, 58
BshNI GGYRCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 155
BsiHKCI CYCGRG 2 cut(s) 82, 100
BsiSI CCGG 8 cut(s) 76, 113, 148, 156, 312, 330, 367, 395
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 5 cut(s) 18, 82, 112, 312, 486
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 11, 58
BsoBI CYCGRG 2 cut(s) 82, 100
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 7 cut(s) 12, 59, 87, 177, 183, 383, 447
BspANI GGCC 2 cut(s) 11, 58
BspCNI CTCAG 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 147
BspLI GGNNCC 5 cut(s) 91, 118, 393, 478, 479
BspT107I GGYRCC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 156, 342
BssMI GATC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 436
BstAPI GCANNNNNTGC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 4, 311, 409
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 294
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 8, 363
BstSCI CCNGG 6 cut(s) 74, 112, 155, 311, 329, 393
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 41, 102
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 11, 58
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 363
CfoI GCGC 3 cut(s) 4, 311, 409
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 6 cut(s) 9, 89, 145, 391, 477, 532
CpoI CGGWCCG 1 cut(s) 145
Csp6I GTAC 3 cut(s) 117, 301, 334
CspI CGGWCCG 1 cut(s) 145
CviAII CATG 1 cut(s) 298
CviJI RGCY 8 cut(s) 11, 58, 105, 153, 215, 412, 422, 441
CviKI_1 RGCY 8 cut(s) 11, 58, 105, 153, 215, 412, 422, 441
CviQI GTAC 3 cut(s) 117, 301, 334
DdeI CTNAG 1 cut(s) 413
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EciI GGCGGA 2 cut(s) 102, 198
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 5 cut(s) 89, 145, 391, 477, 532
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 2 cut(s) 82, 100
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 477, 532
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 1 cut(s) 301
FaiI YATR 2 cut(s) 299, 465
FaqI GGGAC 1 cut(s) 490
FatI CATG 1 cut(s) 297
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 12, 59, 410
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 12, 59, 410
GlaI GCGC 3 cut(s) 3, 310, 408
GluI GCNGC 3 cut(s) 12, 59, 410
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 2 cut(s) 11, 58
HapII CCGG 8 cut(s) 76, 113, 148, 156, 312, 330, 367, 395
HhaI GCGC 3 cut(s) 4, 311, 409
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 3 cut(s) 2, 309, 407
HinP1I GCGC 3 cut(s) 2, 309, 407
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HpaII CCGG 8 cut(s) 76, 113, 148, 156, 312, 330, 367, 395
Hpy166II GTNNAC 2 cut(s) 243, 336
Hpy188I TCNGA 5 cut(s) 33, 169, 210, 220, 271
Hpy188III TCNNGA 3 cut(s) 123, 148, 322
Hpy8I GTNNAC 2 cut(s) 243, 336
Hpy99I CGWCG 4 cut(s) 173, 176, 247, 404
HpyAV CCTTC 1 cut(s) 523
HpyCH4IV ACGT 4 cut(s) 234, 245, 257, 402
HpyCH4V TGCA 2 cut(s) 376, 427
HpyF10VI GCNNNNNNNGC 2 cut(s) 8, 363
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 4 cut(s) 234, 245, 257, 402
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 3 cut(s) 2, 309, 407
KflI GGGWCCC 1 cut(s) 477
Kpn2I TCCGGA 1 cut(s) 147
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 4 cut(s) 150, 158, 380, 511
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 262
MaeII ACGT 4 cut(s) 234, 245, 257, 402
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 296
MbiI CCGCTC 1 cut(s) 383
MboI GATC 1 cut(s) 294
MboII GAAGA 5 cut(s) 46, 107, 138, 241, 442
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 460, 490, 539
MmeI TCCRAC 3 cut(s) 159, 192, 249
MroI TCCGGA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 8 cut(s) 76, 113, 148, 156, 312, 330, 367, 395
MspR9I CCNGG 6 cut(s) 76, 114, 157, 313, 331, 395
MwoI GCNNNNNNNGC 2 cut(s) 8, 363
NciI CCSGG 6 cut(s) 76, 114, 157, 313, 331, 395
NdeII GATC 1 cut(s) 294
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 5 cut(s) 91, 118, 393, 478, 479
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 67
PkrI GCNGC 3 cut(s) 13, 60, 411
PpuMI RGGWCCY 2 cut(s) 477, 532
PsiI TTATAA 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 155
Psp5II RGGWCCY 2 cut(s) 477, 532
PspN4I GGNNCC 5 cut(s) 91, 118, 393, 478, 479
PspPI GGNCC 6 cut(s) 9, 89, 145, 391, 477, 532
PspPPI RGGWCCY 2 cut(s) 477, 532
PstNI CAGNNNCTG 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 3 cut(s) 118, 302, 335
RsaNI GTAC 3 cut(s) 117, 301, 334
Rsr2I CGGWCCG 1 cut(s) 145
RsrII CGGWCCG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 155
SalI GTCGAC 1 cut(s) 241
SatI GCNGC 3 cut(s) 12, 59, 410
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 6 cut(s) 9, 89, 145, 391, 477, 532
ScrFI CCNGG 6 cut(s) 76, 114, 157, 313, 331, 395
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 5 cut(s) 89, 145, 391, 477, 532
Sse9I AATT 3 cut(s) 460, 490, 539
SsiI CCGC 7 cut(s) 12, 59, 87, 177, 183, 383, 447
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 6 cut(s) 74, 112, 155, 311, 329, 393
StyI CCWWGG 1 cut(s) 342
TaiI ACGT 4 cut(s) 237, 248, 260, 405
TaqI TCGA 1 cut(s) 242
TaqII GACCGA 1 cut(s) 133
TasI AATT 3 cut(s) 460, 490, 539
TauI GCSGC 2 cut(s) 14, 61
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 532
TspGWI ACGGA 3 cut(s) 53, 59, 404
VpaK11BI GGWCC 5 cut(s) 89, 145, 391, 477, 532
XapI RAATTY 2 cut(s) 490, 539
XmiI GTMKAC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.