Rorug05G0344600

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004648
Physical Location & Seq
Forward (+)
42432305 .. 42433243
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0344600.1

Sequence Viewer

Length: 939 bp
ATGCAGTTAATTGACTCGGTGATTCAAAGCCTCCTAGTGTACAGCTTTCAGGTATATGCTTGGCCTAAGTCTCTTTTGACCCAAGTGCAACGTTGGATAAGAAATTTTTTCTGGAATGGGGACCCCTTAAAAGATGGTTCAGCTCTTATTGCGTGGAGCATCTGCTGCTCTCCAAAAGAAAATGGTGGCTTGGGGCTTAAGAATATTTTTACACTCAACCGTTCTCTCCTTTTGAAGCGTGGTTGGGATGTAGCTACCAAGGCTTCCTTCTCTACTTCCTTCCTTCATTCCCGCTTTCTGGCTGACGGCTTATCCTTGCTATCTACTTACAAGAAATCTTCTGTGTGGTTAGGATTAAAAAATTTATGGCCTGCTATTTTACAGAATGCCCGTTGGGTGATTGGTAATGGCCGCTCTGTAAAATTTTGGAAGGATAACTGGTTTGGGCAACCTATTACTACCCTTCTAAATTTTGAGGCTGAGCACCTCAGGTTTCTTGAAGATAAAGTAAGTGCTTTCATTGTGGATAATGCTTGGGATTTGCCAGAAAGTTTTTGCTCTTTGTACCCAGATATTGCACAAGCCATAATGAAGATTCCTATTTCACTGACAAATGAAGAGGACCAGTTAATCTGGGTAGGGACATCTTCTGGCTGCCTGACGGCTAAAGAGGCTTATTTTTTCTTGGCTGGAAATCAACAGACATCAATTTGGGGAAAAACTATCTGGCATGCAGCTATTCAGCCGCGTAAAAGCCTGGCTACTTGGAAGGTTCTCCATAACAAAATCCTAACGGATGAGCTTCTTCAACGCAGGGGCGTTCACTTGTGTTCAAGGTGCTCCTTTTGTTTTAATGCTATGGAGACTACTCGACACTTGTTCTGGCACTGTCAAGAGATTTTACGTTTGTGGGAGTGGCTTTCTTTTCTTTTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

312

Amino Acids

36.05

Weight (kDa)

9.1

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 221 - 304 1.6e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 414
AccII CGCG 1 cut(s) 748
AciI CCGC 3 cut(s) 292, 412, 746
AclI AACGTT 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 4 cut(s) 103, 361, 422, 469
AfaI GTAC 2 cut(s) 41, 566
AfiI CCNNNNNNNGG 1 cut(s) 298
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 5 cut(s) 26, 235, 500, 809, 834
AjnI CCWGG 1 cut(s) 756
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 5 cut(s) 45, 143, 254, 737, 802
AluI AGCT 5 cut(s) 45, 143, 254, 737, 802
Alw21I GWGCWC 2 cut(s) 486, 842
Alw26I GTCTC 2 cut(s) 75, 857
AoxI GGCC 3 cut(s) 62, 368, 409
ApeKI GCWGC 3 cut(s) 165, 654, 734
ApoI RAATTY 4 cut(s) 103, 361, 422, 469
AspS9I GGNCC 2 cut(s) 121, 622
AsuHPI GGTGA 2 cut(s) 31, 409
AvaII GGWCC 2 cut(s) 121, 622
AxyI CCTNAGG 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 486, 842
BbvI GCAGC 3 cut(s) 152, 641, 746
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 322, 678
BciT130I CCWGG 1 cut(s) 758
BcoDI GTCTC 2 cut(s) 75, 857
BfaI CTAG 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 5 cut(s) 166, 412, 655, 735, 746
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 5 cut(s) 167, 413, 656, 736, 747
Bme1390I CCNGG 1 cut(s) 758
Bme18I GGWCC 2 cut(s) 121, 622
BmgT120I GGNCC 2 cut(s) 121, 622
BmiI GGNNCC 2 cut(s) 122, 123
BmrFI CCNGG 1 cut(s) 758
BmsI GCATC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 443, 625
Bse21I CCTNAGG 1 cut(s) 488
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 253, 802
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 471, 502
BseNI ACTGG 2 cut(s) 443, 625
BseXI GCAGC 3 cut(s) 152, 641, 746
Bsh1236I CGCG 1 cut(s) 748
BshFI GGCC 3 cut(s) 64, 370, 411
BsiHKAI GWGCWC 2 cut(s) 486, 842
BslFI GGGAC 2 cut(s) 134, 655
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 75, 857
BsmFI GGGAC 2 cut(s) 134, 655
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 3 cut(s) 64, 370, 411
Bsp1286I GDGCHC 2 cut(s) 486, 842
Bsp1407I TGTACA 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 3 cut(s) 292, 412, 746
BspANI GGCC 3 cut(s) 64, 370, 411
BspCNI CTCAG 2 cut(s) 472, 501
BspFNI CGCG 1 cut(s) 748
BspLI GGNNCC 2 cut(s) 122, 123
BspTI CTTAAG 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 2 cut(s) 443, 625
BssECI CCNNGG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 2 cut(s) 221, 890
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 372, 732
BstDEI CTNAG 3 cut(s) 66, 480, 488
BstF5I GGATG 2 cut(s) 253, 802
BstFNI CGCG 1 cut(s) 748
BstMAI GTCTC 2 cut(s) 75, 857
BstMWI GCNNNNNNNGC 4 cut(s) 149, 165, 260, 671
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 1 cut(s) 756
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 152, 641, 746
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 3 cut(s) 64, 370, 411
BtsCI GGATG 2 cut(s) 253, 802
BtsIMutI CAGTG 2 cut(s) 605, 886
Cac8I GCNNGC 2 cut(s) 372, 732
Cfr13I GGNCC 2 cut(s) 121, 622
Csp6I GTAC 2 cut(s) 40, 565
CviAII CATG 1 cut(s) 731
CviQI GTAC 2 cut(s) 40, 565
DdeI CTNAG 3 cut(s) 66, 480, 488
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 121, 622
Eco81I CCTNAGG 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 734
FaiI YATR 7 cut(s) 55, 57, 367, 587, 732, 780, 860
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 134, 655
FatI CATG 1 cut(s) 730
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 5 cut(s) 166, 412, 655, 735, 746
FokI GGATG 2 cut(s) 260, 809
Fsp4HI GCNGC 5 cut(s) 166, 412, 655, 735, 746
FspBI CTAG 1 cut(s) 35
GluI GCNGC 5 cut(s) 166, 412, 655, 735, 746
HaeIII GGCC 3 cut(s) 64, 370, 411
Hin1II CATG 1 cut(s) 734
HinfI GANTC 3 cut(s) 14, 22, 595
HphI GGTGA 2 cut(s) 31, 409
Hpy166II GTNNAC 2 cut(s) 40, 823
Hpy188III TCNNGA 3 cut(s) 112, 497, 893
Hpy8I GTNNAC 2 cut(s) 40, 823
HpyAV CCTTC 6 cut(s) 277, 289, 293, 424, 473, 763
HpyCH4III ACNGT 2 cut(s) 221, 890
HpyCH4IV ACGT 2 cut(s) 91, 904
HpyCH4V TGCA 4 cut(s) 4, 88, 578, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 165, 260, 671
HpyF3I CTNAG 3 cut(s) 66, 480, 488
HpySE526I ACGT 2 cut(s) 91, 904
Hsp92II CATG 1 cut(s) 734
KflI GGGWCCC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 156, 845
Lsp1109I GCAGC 3 cut(s) 152, 641, 746
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 91, 904
MbiI CCGCTC 1 cut(s) 414
MboII GAAGA 6 cut(s) 330, 512, 604, 629, 639, 797
MhlI GDGCHC 2 cut(s) 486, 842
MluCI AATT 6 cut(s) 9, 103, 361, 422, 469, 708
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 5 cut(s) 41, 469, 497, 613, 664
MseI TTAA 6 cut(s) 8, 128, 198, 356, 629, 852
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 4 cut(s) 149, 165, 260, 671
NlaIII CATG 1 cut(s) 734
NlaIV GGNNCC 2 cut(s) 122, 123
NspI RCATGY 1 cut(s) 734
PaeI GCATGC 1 cut(s) 734
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 22, 595
PkrI GCNGC 5 cut(s) 167, 413, 656, 736, 747
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 2 cut(s) 122, 123
PspPI GGNCC 2 cut(s) 121, 622
PspPPI RGGWCCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 41, 566
RsaNI GTAC 2 cut(s) 40, 565
SaqAI TTAA 6 cut(s) 8, 128, 198, 356, 629, 852
SatI GCNGC 5 cut(s) 166, 412, 655, 735, 746
Sau96I GGNCC 2 cut(s) 121, 622
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 758
SduI GDGCHC 2 cut(s) 486, 842
SfaNI GCATC 1 cut(s) 168
SinI GGWCC 2 cut(s) 121, 622
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 734
Sse9I AATT 6 cut(s) 9, 103, 361, 422, 469, 708
SsiI CCGC 3 cut(s) 292, 412, 746
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 756
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 221, 890
TaiI ACGT 2 cut(s) 94, 907
TaqI TCGA 1 cut(s) 871
TasI AATT 6 cut(s) 9, 103, 361, 422, 469, 708
TatI WGTACW 1 cut(s) 39
TauI GCSGC 2 cut(s) 414, 748
TfiI GAWTC 2 cut(s) 22, 595
Tru1I TTAA 6 cut(s) 8, 128, 198, 356, 629, 852
Tru9I TTAA 6 cut(s) 8, 128, 198, 356, 629, 852
TscAI CASTG 2 cut(s) 612, 893
TseI GCWGC 3 cut(s) 165, 654, 734
TspDTI ATGAA 4 cut(s) 275, 508, 605, 630
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 2 cut(s) 612, 893
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 121, 622
XapI RAATTY 4 cut(s) 103, 361, 422, 469
XceI RCATGY 1 cut(s) 734
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.