Rorug05G0344400

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004648
Physical Location & Seq
Forward (+)
42400337 .. 42401511
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0344400.1

Sequence Viewer

Length: 849 bp
ATGACAGTATCCAATTATCGCGAAGTGTTAAGGAACGCGGACAATAAGAAATGGCAAGCTAGATTAGGGAAAGGCATATACATCGATAGCATTTACATGGAAACATTTGATGCTGAAGAGGAAGCTGCCAGAGCTTATGATATTGCAATGATAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATATAAGTCTATATGATGTCCAAGCCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGCTTTGAAGATGTTAAAGCGGAATTCAGTTGATGATGTGCATCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCTTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGCCTTCAGTATCAATTTTTGATCCCTTCCCTCCAAGTTACTGTCCCTCATGGTTACCAAAACCCTACCTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAGCCAACAGCCCAGTTTCAACCTATCATACCCTTACTGAATCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTCCCAGCACTACCTTGATCAAACCCCTAGCTCTCAATTCCTTCAAGACACTCAGAACCCTAATTTTGTTGCTAGGTTGAACAACCTAGCAAGTGAAAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGACGCGAGTTACGAGATGATGGGGACGAACAAGGGTGGTGCTCATAGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTGATCCTGAGGTTGGGCTGGGCAATTCTTACTTGGATCCTGCTAGCTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

282

Amino Acids

31.49

Weight (kDa)

5.34

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 21, 38, 719
AciI CCGC 2 cut(s) 38, 265
AclWI GGATC 4 cut(s) 403, 791, 824, 837
AcsI RAATTY 2 cut(s) 268, 692
AcuI CTGAAG 3 cut(s) 135, 377, 480
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 242, 806
AgsI TTSAA 5 cut(s) 253, 478, 524, 626, 661
AluBI AGCT 7 cut(s) 59, 125, 134, 321, 612, 681, 840
AluI AGCT 7 cut(s) 59, 125, 134, 321, 612, 681, 840
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 4 cut(s) 403, 791, 824, 837
ApeKI GCWGC 2 cut(s) 125, 768
ApoI RAATTY 2 cut(s) 268, 692
AsuHPI GGTGA 4 cut(s) 169, 341, 554, 806
AsuNHI GCTAGC 1 cut(s) 836
AxyI CCTNAGG 1 cut(s) 801
BaeGI GKGCMC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 829
Bbv12I GWGCWC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 112, 780
BccI CCATC 4 cut(s) 349, 565, 727, 758
BceAI ACGGC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 5 cut(s) 60, 609, 654, 668, 837
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 2 cut(s) 126, 769
BlsI GCNGC 2 cut(s) 127, 770
BmcAI AGTACT 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 831
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 2 cut(s) 100, 295
BmtI GCTAGC 1 cut(s) 840
BmuI ACTGGG 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 806
Bse1I ACTGG 2 cut(s) 517, 565
Bse21I CCTNAGG 1 cut(s) 801
Bse3DI GCAATG 2 cut(s) 153, 316
Bse8I GATNNNNATC 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 242, 806
BseMI GCAATG 2 cut(s) 153, 316
BseMII CTCAG 3 cut(s) 497, 647, 792
BseNI ACTGG 2 cut(s) 517, 565
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 112, 780
BseYI CCCAGC 2 cut(s) 585, 811
Bsh1236I CGCG 3 cut(s) 21, 38, 719
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 757
BslFI GGGAC 2 cut(s) 416, 751
BslI CCNNNNNNNGG 2 cut(s) 242, 806
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 416, 751
Bsp1286I GDGCHC 2 cut(s) 337, 757
Bsp143I GATC 5 cut(s) 358, 408, 598, 796, 829
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 2 cut(s) 38, 265
BspCNI CTCAG 3 cut(s) 496, 646, 793
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 3 cut(s) 21, 38, 719
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 831
BspOI GCTAGC 1 cut(s) 840
BspPI GGATC 4 cut(s) 403, 791, 824, 837
BsrDI GCAATG 2 cut(s) 153, 316
BsrI ACTGG 2 cut(s) 517, 565
BssMI GATC 5 cut(s) 358, 408, 598, 796, 829
Bst4CI ACNGT 2 cut(s) 7, 430
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 57, 838, 842
BstDEI CTNAG 4 cut(s) 329, 483, 633, 801
BstEII GGTNACC 1 cut(s) 440
BstFNI CGCG 3 cut(s) 21, 38, 719
BstKTI GATC 5 cut(s) 361, 411, 601, 799, 832
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 5 cut(s) 358, 408, 598, 796, 829
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 3 cut(s) 21, 38, 719
BstV1I GCAGC 2 cut(s) 112, 780
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
Bsu15I ATCGAT 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 801
BsuI GTATCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 84
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 57, 838, 842
CciI TCATGA 1 cut(s) 712
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 568
CviAII CATG 4 cut(s) 97, 387, 437, 713
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 4 cut(s) 329, 483, 633, 801
DpnI GATC 5 cut(s) 360, 410, 600, 798, 831
DpnII GATC 5 cut(s) 358, 408, 598, 796, 829
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco57I CTGAAG 3 cut(s) 135, 377, 480
Eco81I CCTNAGG 1 cut(s) 801
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 268
FaeI CATG 4 cut(s) 100, 390, 440, 716
FaqI GGGAC 2 cut(s) 416, 751
FatI CATG 4 cut(s) 96, 386, 436, 712
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 126, 769
Fsp4HI GCNGC 2 cut(s) 126, 769
FspBI CTAG 5 cut(s) 60, 609, 654, 668, 837
GluI GCNGC 2 cut(s) 126, 769
GsaI CCCAGC 2 cut(s) 589, 815
GsuI CTGGAG 1 cut(s) 301
HgaI GACGC 1 cut(s) 725
Hin1II CATG 4 cut(s) 100, 390, 440, 716
HinfI GANTC 2 cut(s) 304, 544
HphI GGTGA 4 cut(s) 169, 341, 554, 806
Hpy188I TCNGA 2 cut(s) 460, 636
Hpy188III TCNNGA 6 cut(s) 20, 218, 548, 626, 713, 800
HpyAV CCTTC 3 cut(s) 401, 423, 632
HpyCH4III ACNGT 2 cut(s) 7, 430
HpyCH4V TGCA 2 cut(s) 146, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 4 cut(s) 329, 483, 633, 801
Hsp92II CATG 4 cut(s) 100, 390, 440, 716
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 358, 408, 598, 796, 829
Lsp1109I GCAGC 2 cut(s) 112, 780
LweI GCATC 2 cut(s) 100, 295
MaeI CTAG 5 cut(s) 60, 609, 654, 668, 837
MaeIII GTNAC 3 cut(s) 424, 440, 722
MalI GATC 5 cut(s) 360, 410, 600, 798, 831
MboI GATC 5 cut(s) 358, 408, 598, 796, 829
MboII GAAGA 4 cut(s) 128, 265, 309, 701
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 2 cut(s) 337, 757
MluCI AATT 9 cut(s) 13, 181, 268, 382, 401, 617, 643, 692, 817
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 763
MnlI CCTC 7 cut(s) 112, 155, 428, 444, 466, 492, 796
MseI TTAA 2 cut(s) 29, 260
MslI CAYNNNNRTG 2 cut(s) 95, 762
MvnI CGCG 3 cut(s) 21, 38, 719
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 5 cut(s) 358, 408, 598, 796, 829
NheI GCTAGC 1 cut(s) 836
NlaIII CATG 4 cut(s) 100, 390, 440, 716
NlaIV GGNNCC 1 cut(s) 831
NruI TCGCGA 1 cut(s) 21
PagI TCATGA 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 2 cut(s) 127, 770
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 2 cut(s) 585, 811
PspN4I GGNNCC 1 cut(s) 831
PsuI RGATCY 1 cut(s) 829
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 95, 762
SaqAI TTAA 2 cut(s) 29, 260
SatI GCNGC 2 cut(s) 126, 769
Sau3AI GATC 5 cut(s) 358, 408, 598, 796, 829
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 2 cut(s) 337, 757
SfaNI GCATC 2 cut(s) 100, 295
SmiMI CAYNNNNRTG 2 cut(s) 95, 762
Sse9I AATT 9 cut(s) 13, 181, 268, 382, 401, 617, 643, 692, 817
SsiI CCGC 2 cut(s) 38, 265
SspMI CTAG 5 cut(s) 60, 609, 654, 668, 837
TaaI ACNGT 2 cut(s) 7, 430
TaqI TCGA 1 cut(s) 84
TasI AATT 9 cut(s) 13, 181, 268, 382, 401, 617, 643, 692, 817
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 2 cut(s) 29, 260
Tru9I TTAA 2 cut(s) 29, 260
TseI GCWGC 2 cut(s) 125, 768
TspDTI ATGAA 2 cut(s) 375, 701
XapI RAATTY 2 cut(s) 268, 692
XspI CTAG 5 cut(s) 60, 609, 654, 668, 837
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.