Rorug05G0344500

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004648
Physical Location & Seq
Forward (+)
42405145 .. 42405306
162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0344500.1

Sequence Viewer

Length: 162 bp
ATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGCAATCGACAAGGAGACCGTCGATCAAGAAGGTGGATCCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

53

Amino Acids

6.09

Weight (kDa)

4.85

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17e PF00833 1 - 47 2.6e-17 Ribosomal S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 30, 63
AciI CCGC 4 cut(s) 28, 30, 70, 96
AclWI GGATC 2 cut(s) 147, 160
AfiI CCNNNNNNNGG 2 cut(s) 29, 55
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 147, 160
AoxI GGCC 1 cut(s) 19
ApaI GGGCCC 1 cut(s) 23
AspLEI GCGC 3 cut(s) 9, 63, 69
AspS9I GGNCC 2 cut(s) 19, 20
BaeGI GKGCMC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 70
BisI GCNGC 2 cut(s) 31, 70
BlsI GCNGC 2 cut(s) 32, 71
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 19, 20
BmiI GGNNCC 3 cut(s) 21, 22, 154
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 18, 42
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 26
BsaBI GATNNNNATC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 55
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 29, 55
BseRI GAGGAG 2 cut(s) 68, 71
BseSI GKGCMC 1 cut(s) 23
Bsh1236I CGCG 2 cut(s) 30, 63
BshFI GGCC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 29, 55
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 114, 139, 152
BspACI CCGC 4 cut(s) 28, 30, 70, 96
BspANI GGCC 1 cut(s) 21
BspFNI CGCG 2 cut(s) 30, 63
BspLI GGNNCC 3 cut(s) 21, 22, 154
BspPI GGATC 2 cut(s) 147, 160
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 114, 139, 152
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 2 cut(s) 30, 63
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 3 cut(s) 9, 63, 69
BstKTI GATC 3 cut(s) 117, 142, 155
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 114, 139, 152
BstMWI GCNNNNNNNGC 2 cut(s) 27, 69
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 23
BstUI CGCG 2 cut(s) 30, 63
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 3 cut(s) 9, 63, 69
Cfr13I GGNCC 2 cut(s) 19, 20
Cfr42I CCGCGG 1 cut(s) 31
CviAII CATG 2 cut(s) 73, 100
CviJI RGCY 2 cut(s) 21, 46
CviKI_1 RGCY 2 cut(s) 21, 46
DpnI GATC 3 cut(s) 116, 141, 154
DpnII GATC 3 cut(s) 114, 139, 152
EciI GGCGGA 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 19, 20
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 2 cut(s) 76, 103
FaiI YATR 2 cut(s) 74, 101
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 72, 99
Fnu4HI GCNGC 2 cut(s) 31, 70
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 31, 70
GlaI GCGC 3 cut(s) 8, 62, 68
GluI GCNGC 2 cut(s) 31, 70
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 3 cut(s) 9, 63, 69
Hin1II CATG 2 cut(s) 76, 103
Hin6I GCGC 3 cut(s) 7, 61, 67
HinP1I GCGC 3 cut(s) 7, 61, 67
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 13, 143
Hpy99I CGWCG 3 cut(s) 92, 113, 140
HpyAV CCTTC 2 cut(s) 10, 140
HpyCH4III ACNGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 69
Hsp92II CATG 2 cut(s) 76, 103
HspAI GCGC 3 cut(s) 7, 61, 67
KspI CCGCGG 1 cut(s) 31
Kzo9I GATC 3 cut(s) 114, 139, 152
LmnI GCTCC 2 cut(s) 51, 58
LpnPI CCDG 3 cut(s) 26, 35, 62
LweI GCATC 2 cut(s) 18, 42
MalI GATC 3 cut(s) 116, 141, 154
MboI GATC 3 cut(s) 114, 139, 152
MboII GAAGA 1 cut(s) 115
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 3 cut(s) 46, 49, 50
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 2 cut(s) 30, 63
MwoI GCNNNNNNNGC 2 cut(s) 27, 69
NdeII GATC 3 cut(s) 114, 139, 152
NlaIII CATG 2 cut(s) 76, 103
NlaIV GGNNCC 3 cut(s) 21, 22, 154
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 2 cut(s) 32, 71
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 21, 22, 154
PspOMI GGGCCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 19, 20
PsuI RGATCY 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 80
SacII CCGCGG 1 cut(s) 31
SatI GCNGC 2 cut(s) 31, 70
Sau3AI GATC 3 cut(s) 114, 139, 152
Sau96I GGNCC 2 cut(s) 19, 20
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 23
SetI ASST 2 cut(s) 48, 151
SfaNI GCATC 2 cut(s) 18, 42
Sfr303I CCGCGG 1 cut(s) 31
SgrBI CCGCGG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 4 cut(s) 28, 30, 70, 96
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 123, 138
TaqII GACCGA 1 cut(s) 122
TauI GCSGC 2 cut(s) 33, 72
TspDTI ATGAA 2 cut(s) 17, 116
Tth111I GACNNNGTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.