Rorug05G0344700

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004648
Physical Location & Seq
Reverse (-)
42445981 .. 42448627
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0344700.1

Sequence Viewer

Length: 1089 bp
ATGTTCTCCACCCCATTCGTACTCTCCTTCGCCCTCCTCCTCTCCATCCCTCTCCTCTTCCTCCTCGCCCCCCATTTCCTCCCTCCCAACAACCAAATCCCGATCCCCGCCGCCGATGAAATCGACGACCAGGCCCTCTTCTCCCGCGCCGTCCGATCCAAATCCGCATTCACCCGCCTCTCCCTCGATTCCAAAACCAAGCCCAAAATCGCCTTCCTCTTCCTCACCAACTCCGACCTCCACTTCGCCCCTCTCTGGCAACGCTTCTTTTCCAAAACTGCCCCCAATCTCTACAGTATCTACGTCCACGCCGATCCCTCCGTCAACGTCACCATCCCTCCGGGGGTTTTCCGCGACCGTTTCATCGCCTCAAAGCGGACCTACCGTGCCTCCCCGACCCTGATCTCCGCCACGCGCCGGTTGCTCGCCACCGCCGTCCTCGACGATCCGGCCAATGTCTTCTTCGCCGTCCTCTCCCAGTACTGCGTCCCTCTCCACTCCTTCCGCTACGTCTACCGCTCCCTCTTCGCCTCCGCCACTTTCGACAAGTCCCGCCCCGCCACCGAGTCCGACGCCGAGTTGACTCGGATGATGGGAGTGAAGGTCAGGTACAGGAGCTTCATCGAAATCCTCTCCAAATCGACCAGTCTCTGGAAGCGCTACGCCGCCAGGGGAAGGTACTCCATGATGCCGGAGGTCCCTTTCGACCAGTTCCGGGTCGGGTCGCAGTTCTTCTTGCTCACGCGCCGTCACGCATTGGTGGTTTTGAAGGATCGGCAGCTGTGGCAGAAATTCAAACTGCCGTGTTATCGGGAGGACGAGTGTTACCCGGAGGAGCATTACTTTCCGACGCTGTTGTCGATGGCGGATCCGGATGGGTGTACCCACTATACTCTGACCCGGGTTAATTGGACGGGTACGGTAAATGGGCACCCGTACACTTACCGACCCGGCGAAGTGTCGGCACAGCTTATTTATCAACTGCGGCAGTCAAATTTTTCCGAGTCTTACTTGTTTGCGAGGAAATTCTCGCCGGATTGCTTGAAACCCTTGTTGGGTTTATCCGAGAAGGTCATTTTCCGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

362

Amino Acids

41.72

Weight (kDa)

9.63

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 70 - 184 3.8e-26 Core-2/I-Branching enzyme
Branch PF02485 197 - 328 3.7e-28 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 930
AccB7I CCANNNNNTGG 1 cut(s) 651
AccBSI CCGCTC 1 cut(s) 519
AccI GTMKAC 1 cut(s) 513
AccII CGCG 4 cut(s) 147, 354, 415, 745
AccIII TCCGGA 1 cut(s) 871
AclWI GGATC 7 cut(s) 97, 150, 308, 440, 780, 863, 876
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 3 cut(s) 791, 994, 1025
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 7 cut(s) 21, 482, 611, 680, 883, 919, 938
AfeI AGCGCT 1 cut(s) 659
AfiI CCNNNNNNNGG 8 cut(s) 255, 343, 375, 417, 651, 675, 715, 1055
AgsI TTSAA 3 cut(s) 769, 796, 1045
AjnI CCWGG 2 cut(s) 129, 668
AjuI GAANNNNNNNTTGG 8 cut(s) 152, 184, 197, 229, 446, 478, 1037, 1069
AluBI AGCT 3 cut(s) 618, 781, 970
AluI AGCT 3 cut(s) 618, 781, 970
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 7 cut(s) 97, 150, 308, 440, 780, 863, 876
AlwNI CAGNNNCTG 1 cut(s) 651
Ama87I CYCGRG 1 cut(s) 900
Aor13HI TCCGGA 1 cut(s) 871
Aor51HI AGCGCT 1 cut(s) 659
AoxI GGCC 2 cut(s) 132, 450
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 3 cut(s) 791, 994, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 4 cut(s) 149, 417, 660, 747
AspS9I GGNCC 3 cut(s) 133, 378, 697
AsuC2I CCSGG 7 cut(s) 342, 716, 830, 901, 902, 951, 1082
AsuHPI GGTGA 3 cut(s) 163, 217, 322
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 2 cut(s) 378, 697
BaeGI GKGCMC 1 cut(s) 933
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 930
BarI GAAGNNNNNNTAC 4 cut(s) 593, 602, 625, 634
BbsI GAAGAC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 790
BccI CCATC 5 cut(s) 53, 341, 586, 856, 869
BceAI ACGGC 5 cut(s) 134, 419, 452, 732, 787
BciT130I CCWGG 2 cut(s) 131, 670
BcnI CCSGG 7 cut(s) 342, 716, 830, 901, 902, 951, 1082
BcoDI GTCTC 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 292
BfoI RGCGCY 1 cut(s) 661
BisI GCNGC 4 cut(s) 111, 666, 779, 986
BlsI GCNGC 4 cut(s) 112, 667, 780, 987
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 9 cut(s) 131, 342, 670, 716, 830, 901, 902, 951, 1082
Bme18I GGWCC 2 cut(s) 378, 697
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 3 cut(s) 133, 378, 697
BmiI GGNNCC 3 cut(s) 699, 870, 932
BmrFI CCNGG 9 cut(s) 131, 342, 670, 716, 830, 901, 902, 951, 1082
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 678
BmuI ACTGGG 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 451
BpuMI CCSGG 7 cut(s) 342, 716, 830, 901, 902, 951, 1082
BsaBI GATNNNNATC 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 341, 669, 900
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 8 cut(s) 322, 352, 374, 404, 588, 618, 806, 836
Bsc4I CCNNNNNNNGG 8 cut(s) 255, 343, 375, 417, 651, 675, 715, 1055
Bse118I RCCGGY 1 cut(s) 417
Bse1I ACTGG 3 cut(s) 478, 645, 709
Bse8I GATNNNNATC 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 871
BseBI CCWGG 2 cut(s) 131, 670
BseDI CCNNGG 3 cut(s) 341, 669, 900
BseGI GGATG 4 cut(s) 45, 333, 594, 880
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 8 cut(s) 255, 343, 375, 417, 651, 675, 715, 1055
BseNI ACTGG 3 cut(s) 478, 645, 709
BseRI GAGGAG 5 cut(s) 26, 29, 44, 53, 848
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 1 cut(s) 790
Bsh1236I CGCG 4 cut(s) 147, 354, 415, 745
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 134, 452
BshNI GGYRCC 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 900
BslFI GGGAC 3 cut(s) 473, 535, 683
BslI CCNNNNNNNGG 8 cut(s) 255, 343, 375, 417, 651, 675, 715, 1055
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 3 cut(s) 473, 535, 683
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 134, 452
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 933
Bsp13I TCCGGA 1 cut(s) 871
Bsp143I GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
BspANI GGCC 2 cut(s) 134, 452
BspEI TCCGGA 1 cut(s) 871
BspFNI CGCG 4 cut(s) 147, 354, 415, 745
BspLI GGNNCC 3 cut(s) 699, 870, 932
BspPI GGATC 7 cut(s) 97, 150, 308, 440, 780, 863, 876
BspT107I GGYRCC 1 cut(s) 930
BsrBI CCGCTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 417
BsrI ACTGG 3 cut(s) 478, 645, 709
BssAI RCCGGY 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 341, 669, 900
BssMI GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
BssNI GRCGYC 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 131, 670
Bst4CI ACNGT 4 cut(s) 296, 359, 386, 922
Bst6I CTCTTC 4 cut(s) 62, 143, 224, 530
BstACI GRCGYC 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 426
BstF5I GGATG 4 cut(s) 45, 333, 594, 880
BstFNI CGCG 4 cut(s) 147, 354, 415, 745
BstH2I RGCGCY 1 cut(s) 661
BstHHI GCGC 4 cut(s) 149, 417, 660, 747
BstKTI GATC 7 cut(s) 105, 158, 316, 405, 448, 775, 871
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 421, 784
BstNI CCWGG 2 cut(s) 131, 670
BstSCI CCNGG 9 cut(s) 129, 340, 668, 714, 828, 899, 900, 949, 1080
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 933
BstUI CGCG 4 cut(s) 147, 354, 415, 745
BstV1I GCAGC 1 cut(s) 790
BstV2I GAAGAC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 2 cut(s) 134, 452
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 4 cut(s) 45, 333, 594, 880
Cac8I GCNNGC 1 cut(s) 426
CaiI CAGNNNCTG 1 cut(s) 651
CfoI GCGC 4 cut(s) 149, 417, 660, 747
Cfr10I RCCGGY 1 cut(s) 417
Cfr13I GGNCC 3 cut(s) 133, 378, 697
Cfr9I CCCGGG 1 cut(s) 900
CseI GACGC 3 cut(s) 475, 581, 859
Csp6I GTAC 7 cut(s) 20, 481, 610, 679, 882, 918, 937
CviAII CATG 1 cut(s) 685
CviJI RGCY 6 cut(s) 134, 202, 452, 618, 781, 970
CviKI_1 RGCY 6 cut(s) 134, 202, 452, 618, 781, 970
CviQI GTAC 7 cut(s) 20, 481, 610, 679, 882, 918, 937
DpnI GATC 7 cut(s) 104, 157, 315, 404, 447, 774, 870
DpnII GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
DrdI GACNNNNNNGTC 1 cut(s) 856
DseDI GACNNNNNNGTC 1 cut(s) 856
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 4 cut(s) 62, 143, 224, 530
EarI CTCTTC 4 cut(s) 62, 143, 224, 530
EciI GGCGGA 3 cut(s) 397, 523, 881
Eco47I GGWCC 2 cut(s) 378, 697
Eco47III AGCGCT 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 900
EcoO109I RGGNCCY 2 cut(s) 133, 697
EcoRII CCWGG 2 cut(s) 129, 668
FaeI CATG 1 cut(s) 688
FaiI YATR 2 cut(s) 686, 891
FaqI GGGAC 3 cut(s) 473, 535, 683
FatI CATG 1 cut(s) 684
FauI CCCGC 5 cut(s) 115, 152, 182, 560, 565
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 4 cut(s) 111, 666, 779, 986
FokI GGATG 4 cut(s) 32, 320, 601, 887
Fsp4HI GCNGC 4 cut(s) 111, 666, 779, 986
GlaI GCGC 4 cut(s) 148, 416, 659, 746
GluI GCNGC 4 cut(s) 111, 666, 779, 986
HaeII RGCGCY 1 cut(s) 661
HaeIII GGCC 2 cut(s) 134, 452
HgaI GACGC 3 cut(s) 475, 581, 859
HhaI GCGC 4 cut(s) 149, 417, 660, 747
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 1 cut(s) 688
Hin6I GCGC 4 cut(s) 147, 415, 658, 745
HinP1I GCGC 4 cut(s) 147, 415, 658, 745
HincII GTYRAC 2 cut(s) 325, 582
HindII GTYRAC 2 cut(s) 325, 582
HinfI GANTC 4 cut(s) 188, 566, 583, 1004
HphI GGTGA 3 cut(s) 163, 217, 322
Hpy166II GTNNAC 6 cut(s) 307, 325, 514, 582, 882, 939
Hpy188I TCNGA 8 cut(s) 155, 235, 571, 588, 849, 897, 1003, 1066
Hpy188III TCNNGA 4 cut(s) 100, 652, 812, 872
Hpy8I GTNNAC 6 cut(s) 307, 325, 514, 582, 882, 939
Hpy99I CGWCG 4 cut(s) 128, 446, 575, 853
HpyAV CCTTC 7 cut(s) 37, 223, 511, 595, 669, 763, 1063
HpyCH4III ACNGT 4 cut(s) 296, 359, 386, 922
HpyCH4IV ACGT 3 cut(s) 303, 327, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 784
HpySE526I ACGT 3 cut(s) 303, 327, 510
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 1 cut(s) 688
HspAI GCGC 4 cut(s) 147, 415, 658, 745
Kpn2I TCCGGA 1 cut(s) 871
Kzo9I GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
LmnI GCTCC 3 cut(s) 524, 615, 835
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 1 cut(s) 678
MaeII ACGT 3 cut(s) 303, 327, 510
MaeIII GTNAC 3 cut(s) 328, 749, 824
MalI GATC 7 cut(s) 104, 157, 315, 404, 447, 774, 870
MbiI CCGCTC 1 cut(s) 519
MboI GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
MboII GAAGA 7 cut(s) 49, 130, 211, 451, 454, 517, 724
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 933
MluCI AATT 4 cut(s) 791, 907, 994, 1025
MlyI GAGTC 3 cut(s) 575, 577, 1013
MmeI TCCRAC 3 cut(s) 258, 594, 872
MroI TCCGGA 1 cut(s) 871
MseI TTAA 1 cut(s) 906
MspA1I CMGCKG 1 cut(s) 781
MspR9I CCNGG 9 cut(s) 131, 342, 670, 716, 830, 901, 902, 951, 1082
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 2 cut(s) 131, 670
MvnI CGCG 4 cut(s) 147, 354, 415, 745
MwoI GCNNNNNNNGC 2 cut(s) 421, 784
NciI CCSGG 7 cut(s) 342, 716, 830, 901, 902, 951, 1082
NdeII GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
NlaIII CATG 1 cut(s) 688
NlaIV GGNNCC 3 cut(s) 699, 870, 932
NmeAIII GCCGAG 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 328, 749
PcsI WCGNNNNNNNCGW 3 cut(s) 309, 432, 857
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 651
PfoI TCCNGGA 1 cut(s) 1080
PkrI GCNGC 4 cut(s) 112, 667, 780, 987
PleI GAGTC 3 cut(s) 574, 577, 1012
PpsI GAGTC 3 cut(s) 574, 577, 1012
PpuMI RGGWCCY 1 cut(s) 697
Psp5II RGGWCCY 1 cut(s) 697
Psp6I CCWGG 2 cut(s) 129, 668
PspGI CCWGG 2 cut(s) 129, 668
PspN4I GGNNCC 3 cut(s) 699, 870, 932
PspPI GGNCC 3 cut(s) 133, 378, 697
PspPPI RGGWCCY 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 651
PsuI RGATCY 1 cut(s) 868
PvuII CAGCTG 1 cut(s) 781
RsaI GTAC 7 cut(s) 21, 482, 611, 680, 883, 919, 938
RsaNI GTAC 7 cut(s) 20, 481, 610, 679, 882, 918, 937
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 4 cut(s) 111, 666, 779, 986
Sau3AI GATC 7 cut(s) 102, 155, 313, 402, 445, 772, 868
Sau96I GGNCC 3 cut(s) 133, 378, 697
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 3 cut(s) 575, 577, 1013
ScrFI CCNGG 9 cut(s) 131, 342, 670, 716, 830, 901, 902, 951, 1082
SduI GDGCHC 1 cut(s) 933
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 2 cut(s) 378, 697
SmaI CCCGGG 1 cut(s) 902
Sse9I AATT 4 cut(s) 791, 907, 994, 1025
StyD4I CCNGG 9 cut(s) 129, 340, 668, 714, 828, 899, 900, 949, 1080
TaaI ACNGT 4 cut(s) 296, 359, 386, 922
TaiI ACGT 3 cut(s) 306, 330, 513
TaqI TCGA 8 cut(s) 123, 186, 441, 543, 624, 641, 705, 860
TasI AATT 4 cut(s) 791, 907, 994, 1025
TatI WGTACW 1 cut(s) 480
TauI GCSGC 3 cut(s) 113, 668, 988
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TseFI GTSAC 2 cut(s) 328, 749
TseI GCWGC 1 cut(s) 778
Tsp45I GTSAC 2 cut(s) 328, 749
TspDTI ATGAA 3 cut(s) 132, 352, 610
TspGWI ACGGA 1 cut(s) 310
TspMI CCCGGG 1 cut(s) 900
Van91I CCANNNNNTGG 1 cut(s) 651
VpaK11BI GGWCC 2 cut(s) 378, 697
XapI RAATTY 3 cut(s) 791, 994, 1025
XmaI CCCGGG 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.