Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

86328283 .. 86332964

Gene Structure 4682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACCACTCAATTTGGGGCCTCTTCTTCTTCCTCTCTCTCTTCCTCTTCTGGTACCATTCAGCCCTCTTTCTCTTCCTCTTCTGCTACCATTCAGTCATGGACATACCATGTCTTTTTGAGTTTTAGAGGAGAGGATACGCGCAACTCTTTTACAGGCCATTTGCACAAAAATTTGGTTCAGAAGGGAATTAAAACCTTCATAGATGATGGCCTTACAAGAGGAGAAGAAATATCAACTGCACTTTTTAAAGCAATTGACGAGTCAAAAATTTCTGTCATTGTGTTCTCTGAAAATTATGCTTCCTCAAAATGGTGTTTAGAAGAACTTGTGAAGATCATGCATTGTAATGAATCGAAGCAACAAATTGTATGCCCTATTTTTTACAAGGTAGATCCATCAGATGTACGAAACCAAAAGGGTAGTTTTGGTCAGGCACTCGCTCATCATGATAACTTGGAGAAGGTGGCAGGATGGAAGACAGCTCTTACAAAAGCAGGAAATCTTTCTGGGTGGCATTTCTCACACGGAGGTTGTTTTTTGGAAAATGTCAGAGATAGATCATTGAAATATGGAGGCCTAAAAAAACTACAGAAGTTCCTTCTTTCTAAGACTCTAGGGTTGAGAGACTTAGAGGGAACAAGCAAAGTTAAAGGGATCATGGTTCTGAAAGACATACCGGATCAACAAATACCCTTGAATAAGAAAAGCTTCTTAAAGTTAAGCAGTCTTCAAATTCTTATAATTTGTGGTGATGTATTCTATGGAGATCATGGAGGTTTTCTATGTCAAATGCCTCGGATCTGCACATCACCATTGGGAAAGAGACTACAGGTCAACAGCAATGTCGGCAATCCGTGTGTTATGTTCTCTTTGACGGCCCGATTTACAAATTTGGGATTCCGGAGTGGTTCACTTGGCGCAGGGATTTCGATATGGAAGGACTTCAAGGATATTACGGACGAAGGGCCCCCGATGCTAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCGTTTTCCATAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGATTGACTCCTACTACGATGCTGAAGATCGACTAACTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

387

Amino Acids

42.85

Weight (kDa)

6.56

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	36 - 176	1.1e-52	TIR domain
TIR_2	PF13676	38 - 133	7.5e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	903
AciI	CCGC	1 cut(s)	987
AclWI	GGATC	4 cut(s)	389, 665, 690, 809
AcsI	RAATTY	4 cut(s)	172, 270, 735, 892
AcuI	CTGAAG	4 cut(s)	1091, 1104, 1131, 1158
AfaI	GTAC	2 cut(s)	55, 408
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	568, 700, 734, 949
AhdI	GACNNNNNGTC	1 cut(s)	833
AluBI	AGCT	4 cut(s)	485, 711, 984, 1069
AluI	AGCT	4 cut(s)	485, 711, 984, 1069
Alw26I	GTCTC	3 cut(s)	621, 820, 1082
AlwI	GGATC	4 cut(s)	389, 665, 690, 809
Aor13HI	TCCGGA	1 cut(s)	903
AoxI	GGCC	7 cut(s)	18, 157, 211, 577, 879, 968, 1018
ApaI	GGGCCC	1 cut(s)	972
ApeKI	GCWGC	1 cut(s)	984
ApoI	RAATTY	4 cut(s)	172, 270, 735, 892
Asp700I	GAANNNNTTC	3 cut(s)	505, 710, 944
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	144, 923
AspS9I	GGNCC	4 cut(s)	18, 880, 968, 969
AsuHPI	GGTGA	2 cut(s)	764, 804
BaeGI	GKGCMC	1 cut(s)	972
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	972
BbsI	GAAGAC	2 cut(s)	485, 722
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	3 cut(s)	203, 406, 468
BceAI	ACGGC	1 cut(s)	894
BcgI	CGANNNNNNTGC	2 cut(s)	912, 946
BciVI	GTATCC	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	621, 820, 1082
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	590, 830
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	985
BlpI	GCTNAGC	1 cut(s)	980
BlsI	GCNGC	1 cut(s)	986
BmeRI	GACNNNNNGTC	1 cut(s)	833
BmgT120I	GGNCC	4 cut(s)	18, 880, 968, 969
BmiI	GGNNCC	4 cut(s)	19, 55, 970, 971
BmsI	GCATC	4 cut(s)	966, 1069, 1096, 1123
BpiI	GAAGAC	2 cut(s)	485, 722
BplI	GAGNNNNNCTC	4 cut(s)	1079, 1111, 1106, 1138
Bpu1102I	GCTNAGC	1 cut(s)	980
Bsa29I	ATCGAT	1 cut(s)	1077
BsaJI	CCNNGG	1 cut(s)	797
BsaWI	WCCGGW	2 cut(s)	679, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	981, 1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	850
BseAI	TCCGGA	1 cut(s)	903
BseCI	ATCGAT	1 cut(s)	1077
BseDI	CCNNGG	1 cut(s)	797
BseGI	GGATG	2 cut(s)	479, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	850
BseRI	GAGGAG	2 cut(s)	144, 237
BseSI	GKGCMC	1 cut(s)	972
BseXI	GCAGC	1 cut(s)	971
BsgI	GTGCAG	2 cut(s)	225, 790
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	7 cut(s)	20, 159, 213, 579, 881, 970, 1020
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	1077
BsiSI	CCGG	2 cut(s)	680, 904
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	3 cut(s)	621, 820, 1082
BsnI	GGCC	7 cut(s)	20, 159, 213, 579, 881, 970, 1020
Bsp120I	GGGCCC	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp13I	TCCGGA	1 cut(s)	903
Bsp143I	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
Bsp1720I	GCTNAGC	1 cut(s)	980
BspACI	CCGC	1 cut(s)	987
BspANI	GGCC	7 cut(s)	20, 159, 213, 579, 881, 970, 1020
BspDI	ATCGAT	1 cut(s)	1077
BspEI	TCCGGA	1 cut(s)	903
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	4 cut(s)	19, 55, 970, 971
BspPI	GGATC	4 cut(s)	389, 665, 690, 809
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	850
BssECI	CCNNGG	1 cut(s)	797
BssMI	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
Bst4CI	ACNGT	2 cut(s)	1053, 1153
Bst6I	CTCTTC	7 cut(s)	28, 46, 52, 79, 85, 1080, 1107
BstDEI	CTNAG	3 cut(s)	609, 631, 980
BstF5I	GGATG	2 cut(s)	479, 1018
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	144, 923
BstKTI	GATC	9 cut(s)	339, 397, 563, 660, 685, 772, 804, 1077, 1144
BstMAI	GTCTC	3 cut(s)	621, 820, 1082
BstMBI	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	849, 976
BstSFI	CTRYAG	2 cut(s)	590, 830
BstSLI	GKGCMC	1 cut(s)	972
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	971
BstV2I	GAAGAC	2 cut(s)	485, 722
BstX2I	RGATCY	2 cut(s)	394, 801
BstYI	RGATCY	2 cut(s)	394, 801
Bsu15I	ATCGAT	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	7 cut(s)	20, 159, 213, 579, 881, 970, 1020
BsuTUI	ATCGAT	1 cut(s)	1077
BtsCI	GGATG	2 cut(s)	479, 1018
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	144, 923
Cfr13I	GGNCC	4 cut(s)	18, 880, 968, 969
ClaI	ATCGAT	1 cut(s)	1077
Csp6I	GTAC	2 cut(s)	54, 407
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	6 cut(s)	99, 110, 340, 449, 661, 773
CviQI	GTAC	2 cut(s)	54, 407
DdeI	CTNAG	3 cut(s)	609, 631, 980
DpnI	GATC	9 cut(s)	338, 396, 562, 659, 684, 771, 803, 1076, 1143
DpnII	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
DraI	TTTAAA	1 cut(s)	250
DriI	GACNNNNNGTC	1 cut(s)	833
Eam1104I	CTCTTC	7 cut(s)	28, 46, 52, 79, 85, 1080, 1107
Eam1105I	GACNNNNNGTC	1 cut(s)	833
EarI	CTCTTC	7 cut(s)	28, 46, 52, 79, 85, 1080, 1107
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	972
Eco57I	CTGAAG	4 cut(s)	1091, 1104, 1131, 1158
EcoO109I	RGGNCCY	3 cut(s)	18, 968, 969
EcoT22I	ATGCAT	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	972
FaeI	CATG	6 cut(s)	102, 113, 343, 452, 664, 776
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FatI	CATG	6 cut(s)	98, 109, 339, 448, 660, 772
Fnu4HI	GCNGC	1 cut(s)	985
FokI	GGATG	2 cut(s)	486, 1025
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	1 cut(s)	985
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	2 cut(s)	143, 922
GluI	GCNGC	1 cut(s)	985
HaeIII	GGCC	7 cut(s)	20, 159, 213, 579, 881, 970, 1020
HapII	CCGG	2 cut(s)	680, 904
HhaI	GCGC	2 cut(s)	144, 923
Hin1II	CATG	6 cut(s)	102, 113, 343, 452, 664, 776
Hin6I	GCGC	2 cut(s)	142, 921
HinP1I	GCGC	2 cut(s)	142, 921
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	8 cut(s)	263, 353, 613, 900, 990, 1045, 1094, 1121
HpaII	CCGG	2 cut(s)	680, 904
HphI	GGTGA	2 cut(s)	764, 804
Hpy166II	GTNNAC	3 cut(s)	838, 914, 994
Hpy188I	TCNGA	6 cut(s)	183, 292, 403, 554, 669, 801
Hpy188III	TCNNGA	2 cut(s)	449, 904
Hpy8I	GTNNAC	3 cut(s)	838, 914, 994
HpyAV	CCTTC	7 cut(s)	178, 208, 457, 611, 934, 959, 1010
HpyCH4III	ACNGT	2 cut(s)	1053, 1153
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	4 cut(s)	166, 242, 343, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	849, 976
HpyF3I	CTNAG	3 cut(s)	609, 631, 980
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	6 cut(s)	102, 113, 343, 452, 664, 776
HspAI	GCGC	2 cut(s)	142, 921
Kpn2I	TCCGGA	1 cut(s)	903
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	4 cut(s)	966, 1069, 1096, 1123
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	996
MalI	GATC	9 cut(s)	338, 396, 562, 659, 684, 771, 803, 1076, 1143
MboI	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	394, 801
MhlI	GDGCHC	1 cut(s)	972
MlyI	GAGTC	5 cut(s)	272, 607, 999, 1088, 1115
Mph1103I	ATGCAT	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	903
MroXI	GAANNNNTTC	3 cut(s)	505, 710, 944
MseI	TTAA	5 cut(s)	192, 249, 651, 716, 722
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	2 cut(s)	680, 904
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	849, 976
NdeII	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
NlaIII	CATG	6 cut(s)	102, 113, 343, 452, 664, 776
NlaIV	GGNNCC	4 cut(s)	19, 55, 970, 971
NsiI	ATGCAT	1 cut(s)	345
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	579
PdmI	GAANNNNTTC	3 cut(s)	505, 710, 944
PfeI	GAWTC	3 cut(s)	353, 900, 1045
PkrI	GCNGC	1 cut(s)	986
PleI	GAGTC	5 cut(s)	271, 607, 998, 1088, 1115
PpsI	GAGTC	5 cut(s)	271, 607, 998, 1088, 1115
PsiI	TTATAA	1 cut(s)	743
PspN4I	GGNNCC	4 cut(s)	19, 55, 970, 971
PspOMI	GGGCCC	1 cut(s)	968
PspPI	GGNCC	4 cut(s)	18, 880, 968, 969
PsuI	RGATCY	2 cut(s)	394, 801
RsaI	GTAC	2 cut(s)	55, 408
RsaNI	GTAC	2 cut(s)	54, 407
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	192, 249, 651, 716, 722
SatI	GCNGC	1 cut(s)	985
Sau3AI	GATC	9 cut(s)	336, 394, 560, 657, 682, 769, 801, 1074, 1141
Sau96I	GGNCC	4 cut(s)	18, 880, 968, 969
SchI	GAGTC	5 cut(s)	272, 607, 999, 1088, 1115
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	4 cut(s)	966, 1069, 1096, 1123
SfcI	CTRYAG	2 cut(s)	590, 830
SmiMI	CAYNNNNRTG	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	987
SspMI	CTAG	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	1053, 1153
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	4 cut(s)	356, 932, 1077, 1144
TfiI	GAWTC	3 cut(s)	353, 900, 1045
Tru1I	TTAA	5 cut(s)	192, 249, 651, 716, 722
Tru9I	TTAA	5 cut(s)	192, 249, 651, 716, 722
TseI	GCWGC	1 cut(s)	984
TspDTI	ATGAA	3 cut(s)	190, 366, 1029
TspGWI	ACGGA	3 cut(s)	543, 846, 974
XapI	RAATTY	4 cut(s)	172, 270, 735, 892
XmnI	GAANNNNTTC	3 cut(s)	505, 710, 944
XspI	CTAG	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.