Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007121.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

14131 .. 14847

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007121.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggacttgcctaattgctatgaactgtccggcaatctggctcgtgacgtggcaaaggtgaaaaagaatttacaggataattccaggtcaacaggtctgtcgtttctcagtgcacaatctgagtgtcaggtttactttgaaggcccgatttacaaatttgggattccggagtggttcacttggcgcagggatttcgatatggaaggacttcaaggatgtgaatttagaattgattttcctggaaatttcaaatgggaggacaaaggattggctttctgtgctcaaactgttgatctcgatcacccaaaactgggatcatgtttcggaatagtcacaatctacattaacggtgtatgcatcactaaagcattgctaatcatgatgagactgtccgtgtggggatacttgccattcgatactataatagaacggctgtgtaagagtgggtcaccaccaccttccgtgtgtctggttaagttcgaaattgaaacccgcgatgtatggtctaacgagattacggacgggcccccgatgcaaagctgcggagtccacgttgtaatgccagaggatgaaggccaatttgtaaatgattgtcaaaggattccaccgttttccataagagagctgaagatcgatgctgaagagactgactcctactacgatgctgaagagacagactcctattacgatgctgaagatcgactaactgttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

238

Amino Acids

27.14

Weight (kDa)

4.46

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	493, 543
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	4 cut(s)	67, 155, 221, 244
AcuI	CTGAAG	4 cut(s)	647, 660, 687, 714
AfiI	CCNNNNNNNGG	2 cut(s)	310, 311
AgsI	TTSAA	4 cut(s)	140, 212, 250, 488
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	83, 238
AluBI	AGCT	2 cut(s)	540, 625
AluI	AGCT	2 cut(s)	540, 625
Alw21I	GWGCWC	2 cut(s)	115, 283
Alw26I	GTCTC	3 cut(s)	379, 638, 665
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	3 cut(s)	142, 524, 574
ApaI	GGGCCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	4 cut(s)	67, 155, 221, 244
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	143, 524, 525
AsuHPI	GGTGA	3 cut(s)	70, 293, 441
AsuII	TTCGAA	1 cut(s)	480
BaeGI	GKGCMC	2 cut(s)	115, 528
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	115, 283
BbvI	GCAGC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	446
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	85, 240
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	379, 638, 665
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	85, 240
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	143, 524, 525
BmiI	GGNNCC	2 cut(s)	526, 527
BmrFI	CCNGG	2 cut(s)	85, 240
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	5 cut(s)	366, 522, 625, 652, 679
BmuI	ACTGGG	1 cut(s)	320
BplI	GAGNNNNNCTC	4 cut(s)	635, 667, 662, 694
Bpu14I	TTCGAA	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 311
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	368
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	85, 240
BseCI	ATCGAT	1 cut(s)	633
BseGI	GGATG	2 cut(s)	221, 574
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	310, 311
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	111, 121
BseNI	ACTGG	1 cut(s)	315
BseSI	GKGCMC	2 cut(s)	115, 528
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	144, 526, 576
BshVI	ATCGAT	1 cut(s)	633
BsiHKAI	GWGCWC	2 cut(s)	115, 283
BsiSI	CCGG	2 cut(s)	30, 167
BslI	CCNNNNNNNGG	2 cut(s)	310, 311
BsmAI	GTCTC	3 cut(s)	379, 638, 665
BsnI	GGCC	3 cut(s)	144, 526, 576
Bsp119I	TTCGAA	1 cut(s)	480
Bsp120I	GGGCCC	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	115, 283, 528
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	292, 298, 314, 630, 697
BspACI	CCGC	2 cut(s)	493, 543
BspANI	GGCC	3 cut(s)	144, 526, 576
BspCNI	CTCAG	2 cut(s)	112, 120
BspDI	ATCGAT	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	526, 527
BspPI	GGATC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	5 cut(s)	292, 298, 314, 630, 697
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	85, 240
Bst4CI	ACNGT	6 cut(s)	27, 289, 350, 390, 609, 709
Bst6I	CTCTTC	2 cut(s)	636, 663
BstBI	TTCGAA	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	107, 120
BstEII	GGTNACC	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	221, 574
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	5 cut(s)	295, 301, 317, 633, 700
BstMAI	GTCTC	3 cut(s)	379, 638, 665
BstMBI	GATC	5 cut(s)	292, 298, 314, 630, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 532
BstNI	CCWGG	2 cut(s)	85, 240
BstPI	GGTNACC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	83, 238
BstSLI	GKGCMC	2 cut(s)	115, 528
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	527
Bsu15I	ATCGAT	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	144, 526, 576
BsuTUI	ATCGAT	1 cut(s)	633
BtgZI	GCGATG	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	221, 574
BtsIMutI	CAGTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	143, 524, 525
ClaI	ATCGAT	1 cut(s)	633
CviAII	CATG	2 cut(s)	318, 379
CviJI	RGCY	8 cut(s)	41, 144, 272, 433, 526, 540, 576, 625
CviKI_1	RGCY	8 cut(s)	41, 144, 272, 433, 526, 540, 576, 625
DdeI	CTNAG	2 cut(s)	107, 120
DpnI	GATC	5 cut(s)	294, 300, 316, 632, 699
DpnII	GATC	5 cut(s)	292, 298, 314, 630, 697
Eam1104I	CTCTTC	2 cut(s)	636, 663
EarI	CTCTTC	2 cut(s)	636, 663
Eco24I	GRGCYC	1 cut(s)	528
Eco57I	CTGAAG	4 cut(s)	647, 660, 687, 714
Eco91I	GGTNACC	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	83, 238
EcoT22I	ATGCAT	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	2 cut(s)	321, 382
FaiI	YATR	9 cut(s)	21, 200, 319, 355, 380, 422, 502, 617, 715
FatI	CATG	2 cut(s)	317, 378
FauI	CCCGC	1 cut(s)	500
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	2 cut(s)	228, 581
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	541
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	541
HaeIII	GGCC	3 cut(s)	144, 526, 576
HapII	CCGG	2 cut(s)	30, 167
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	321, 382
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	5 cut(s)	163, 546, 601, 650, 677
HpaII	CCGG	2 cut(s)	30, 167
HphI	GGTGA	3 cut(s)	70, 293, 441
Hpy166II	GTNNAC	5 cut(s)	90, 113, 133, 177, 550
Hpy188I	TCNGA	2 cut(s)	121, 326
Hpy188III	TCNNGA	4 cut(s)	44, 167, 296, 379
Hpy8I	GTNNAC	5 cut(s)	90, 113, 133, 177, 550
HpyAV	CCTTC	4 cut(s)	134, 197, 468, 566
HpyCH4III	ACNGT	6 cut(s)	27, 289, 350, 390, 609, 709
HpyCH4IV	ACGT	2 cut(s)	48, 552
HpyCH4V	TGCA	3 cut(s)	113, 357, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 532
HpyF3I	CTNAG	2 cut(s)	107, 120
HpySE526I	ACGT	2 cut(s)	48, 552
Hsp92II	CATG	2 cut(s)	321, 382
HspAI	GCGC	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	292, 298, 314, 630, 697
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	5 cut(s)	366, 522, 625, 652, 679
MaeII	ACGT	2 cut(s)	48, 552
MaeIII	GTNAC	3 cut(s)	44, 331, 447
MalI	GATC	5 cut(s)	294, 300, 316, 632, 699
MboI	GATC	5 cut(s)	292, 298, 314, 630, 697
MboII	GAAGA	4 cut(s)	640, 653, 680, 707
MhlI	GDGCHC	3 cut(s)	115, 283, 528
MluCI	AATT	9 cut(s)	13, 67, 79, 155, 221, 228, 244, 483, 578
MlyI	GAGTC	3 cut(s)	555, 644, 671
MnlI	CCTC	2 cut(s)	250, 559
Mph1103I	ATGCAT	1 cut(s)	359
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	2 cut(s)	345, 474
MspI	CCGG	2 cut(s)	30, 167
MspR9I	CCNGG	2 cut(s)	85, 240
MvaI	CCWGG	2 cut(s)	85, 240
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	278, 532
NdeII	GATC	5 cut(s)	292, 298, 314, 630, 697
NlaIII	CATG	2 cut(s)	321, 382
NlaIV	GGNNCC	2 cut(s)	526, 527
NmuCI	GTSAC	3 cut(s)	44, 331, 447
NsiI	ATGCAT	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	163, 601
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	542
PleI	GAGTC	3 cut(s)	554, 644, 671
PpsI	GAGTC	3 cut(s)	554, 644, 671
Psp6I	CCWGG	2 cut(s)	83, 238
PspEI	GGTNACC	1 cut(s)	447
PspGI	CCWGG	2 cut(s)	83, 238
PspN4I	GGNNCC	2 cut(s)	526, 527
PspOMI	GGGCCC	1 cut(s)	524
PspPI	GGNCC	3 cut(s)	143, 524, 525
SaqAI	TTAA	2 cut(s)	345, 474
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	5 cut(s)	292, 298, 314, 630, 697
Sau96I	GGNCC	3 cut(s)	143, 524, 525
SchI	GAGTC	3 cut(s)	555, 644, 671
ScrFI	CCNGG	2 cut(s)	85, 240
SduI	GDGCHC	3 cut(s)	115, 283, 528
SetI	ASST	9 cut(s)	51, 60, 89, 97, 132, 460, 542, 555, 627
SfaNI	GCATC	5 cut(s)	366, 522, 625, 652, 679
SfuI	TTCGAA	1 cut(s)	480
Sse9I	AATT	9 cut(s)	13, 67, 79, 155, 221, 228, 244, 483, 578
SsiI	CCGC	2 cut(s)	493, 543
StyD4I	CCNGG	2 cut(s)	83, 238
TaaI	ACNGT	6 cut(s)	27, 289, 350, 390, 609, 709
TaiI	ACGT	2 cut(s)	51, 555
TaqI	TCGA	6 cut(s)	195, 297, 414, 480, 633, 700
TasI	AATT	9 cut(s)	13, 67, 79, 155, 221, 228, 244, 483, 578
TfiI	GAWTC	2 cut(s)	163, 601
Tru1I	TTAA	2 cut(s)	345, 474
Tru9I	TTAA	2 cut(s)	345, 474
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	44, 331, 447
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	3 cut(s)	44, 331, 447
TspDTI	ATGAA	2 cut(s)	36, 585
TspGWI	ACGGA	3 cut(s)	382, 451, 533
TspRI	CASTG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	111
XapI	RAATTY	4 cut(s)	67, 155, 221, 244
XmnI	GAANNNNTTC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.