Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

138610 .. 139896

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgcgcaatttgaaatcagtcgatttgggaaattgcggtgtaacaacgttttcctacttctctagattgccaaacttagaggagttgaaaataagagacagtaaaaaagttaagaagtttgaaattgtggaagagatgaaatccttgaaaaggttggatctaagcggtactgcaatcaaagaattgccttcatcaactatcagatgtctgattaatctggaagagtttactttatcaagttgcggtaatcttgaaggtgtgccgtgcagcatttttgagttgcaacatctagagcttttggatctctcttattgtaaaaagctggtaacatttccaacaaagtcagagttttcaacgggatcgaccagtttacaggacaagcactatgctccattatccgtcaatttggacaattgcgggcgtcttgtagaaattgcagaaattccgcgagaaatatatggcctatctgtgagtagaggctaccgattgcaaaaaatttcaaaattgtcaaacattttggaaggtaaagagtcaaaattgaccccttttatggacttgcttaattgctatgaactgtccggcaatctggctcgtgacgtggcaaaggtgaaaaagaattttccggataattccaggtcaacagctctgtcggttctctttttctcctgtcggcaatctgagtgtcatgttctctttgacggcccgacttataaatttgggattccggagtggttcacttggcgcagggatttcgatatggaaggacttcaaggatgtgaatttagaattgattttcctggaaatttcaaatgggaggacaaaggattggctttctgtgctcaaactgttgatctcgatctccggccctgggctatgagattatgtctcagaatagtcacaatctatattaacggtgtacccatcattagaacatgcctaatcatgatgagaacgtccttgtggggatacttgccattcgatactataatagaacggctgagtgagagtgggtcaccaccaccttccgtgtgtctggttaagttcgaaattgaatttaaaacccgcgttgtatggtctaacaagattacggacgaagggcccccgatgcaaagctgcggagtccacgttgtaatgccagaggatgaaggccaatttgtaaatgattgtcaaaggattccaccgttttccataagagagctgaagatcgatgctgaagagactgactcctactacgatgctgaagagattgactcctactacgatgctgaagatcgactaactgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

428

Amino Acids

48.95

Weight (kDa)

5.24

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	2 cut(s)	448, 1065
AccIII	TCCGGA	2 cut(s)	622, 724
AciI	CCGC	7 cut(s)	36, 165, 243, 417, 446, 1063, 1116
AclI	AACGTT	1 cut(s)	47
AclWI	GGATC	3 cut(s)	165, 309, 367
AcsI	RAATTY	7 cut(s)	441, 495, 616, 713, 779, 802, 1052
AcuI	CTGAAG	4 cut(s)	1220, 1233, 1260, 1287
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	169, 918
AfiI	CCNNNNNNNGG	3 cut(s)	150, 550, 868
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	3 cut(s)	632, 796, 866
AluBI	AGCT	5 cut(s)	295, 322, 644, 1113, 1198
AluI	AGCT	5 cut(s)	295, 322, 644, 1113, 1198
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	3 cut(s)	90, 890, 1211
AlwI	GGATC	3 cut(s)	165, 309, 367
Aor13HI	TCCGGA	2 cut(s)	622, 724
AoxI	GGCC	5 cut(s)	460, 700, 863, 1097, 1147
ApaI	GGGCCC	1 cut(s)	1101
ApeKI	GCWGC	2 cut(s)	267, 1113
ApoI	RAATTY	7 cut(s)	441, 495, 616, 713, 779, 802, 1052
ArsI	GACNNNNNNTTYG	1 cut(s)	1266
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	2 cut(s)	6, 744
AspS9I	GGNCC	4 cut(s)	701, 864, 1097, 1098
AsuHPI	GGTGA	2 cut(s)	619, 1005
AsuII	TTCGAA	1 cut(s)	1044
BaeGI	GKGCMC	1 cut(s)	1101
BanII	GRGCYC	1 cut(s)	1101
BauI	CACGAG	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	279, 1100
BccI	CCATC	1 cut(s)	929
BceAI	ACGGC	3 cut(s)	247, 715, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BciT130I	CCWGG	3 cut(s)	634, 798, 868
BciVI	GTATCC	1 cut(s)	959
BcoDI	GTCTC	3 cut(s)	90, 890, 1211
BfaI	CTAG	2 cut(s)	63, 290
BfuI	GTATCC	1 cut(s)	959
BisI	GCNGC	2 cut(s)	268, 1114
BlsI	GCNGC	2 cut(s)	269, 1115
Bme1390I	CCNGG	3 cut(s)	634, 798, 868
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	4 cut(s)	701, 864, 1097, 1098
BmiI	GGNNCC	2 cut(s)	1099, 1100
BmrFI	CCNGG	3 cut(s)	634, 798, 868
BmsI	GCATC	4 cut(s)	1095, 1198, 1225, 1252
BplI	GAGNNNNNCTC	4 cut(s)	1208, 1240, 1235, 1267
Bpu14I	TTCGAA	1 cut(s)	1044
Bsa29I	ATCGAT	1 cut(s)	1206
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	866, 867
BsaWI	WCCGGW	2 cut(s)	622, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	1110, 1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 550, 868
Bse1I	ACTGG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	855
BseAI	TCCGGA	2 cut(s)	622, 724
BseBI	CCWGG	3 cut(s)	634, 798, 868
BseCI	ATCGAT	1 cut(s)	1206
BseDI	CCNNGG	2 cut(s)	866, 867
BseGI	GGATG	2 cut(s)	779, 1147
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	3 cut(s)	150, 550, 868
BseMII	CTCAG	3 cut(s)	669, 901, 989
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	1101
BseXI	GCAGC	2 cut(s)	279, 1100
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	2 cut(s)	448, 1065
BshFI	GGCC	5 cut(s)	462, 702, 865, 1099, 1149
BshVI	ATCGAT	1 cut(s)	1206
BsiHKAI	GWGCWC	1 cut(s)	841
BsiSI	CCGG	4 cut(s)	579, 623, 725, 862
BslI	CCNNNNNNNGG	3 cut(s)	150, 550, 868
BsmAI	GTCTC	3 cut(s)	90, 890, 1211
BsnI	GGCC	5 cut(s)	462, 702, 865, 1099, 1149
Bsp119I	TTCGAA	1 cut(s)	1044
Bsp120I	GGGCCC	1 cut(s)	1097
Bsp1286I	GDGCHC	2 cut(s)	841, 1101
Bsp13I	TCCGGA	2 cut(s)	622, 724
Bsp143I	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
BspACI	CCGC	7 cut(s)	36, 165, 243, 417, 446, 1063, 1116
BspANI	GGCC	5 cut(s)	462, 702, 865, 1099, 1149
BspCNI	CTCAG	3 cut(s)	670, 900, 990
BspDI	ATCGAT	1 cut(s)	1206
BspEI	TCCGGA	2 cut(s)	622, 724
BspFNI	CGCG	2 cut(s)	448, 1065
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	1099, 1100
BspPI	GGATC	3 cut(s)	165, 309, 367
BspT104I	TTCGAA	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	866, 867
BssMI	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	3 cut(s)	634, 798, 868
Bst4CI	ACNGT	6 cut(s)	101, 576, 847, 914, 1182, 1282
Bst6I	CTCTTC	4 cut(s)	126, 216, 1209, 1236
BstACI	GRCGYC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	1044
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	5 cut(s)	76, 161, 678, 887, 998
BstEII	GGTNACC	1 cut(s)	1011
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	779, 1147
BstFNI	CGCG	2 cut(s)	448, 1065
BstHHI	GCGC	2 cut(s)	6, 744
BstKTI	GATC	7 cut(s)	160, 304, 362, 853, 859, 1206, 1273
BstMAI	GTCTC	3 cut(s)	90, 890, 1211
BstMBI	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 1105
BstNI	CCWGG	3 cut(s)	634, 798, 868
BstNSI	RCATGY	1 cut(s)	936
BstPI	GGTNACC	1 cut(s)	1011
BstSCI	CCNGG	3 cut(s)	632, 796, 866
BstSLI	GKGCMC	1 cut(s)	1101
BstUI	CGCG	2 cut(s)	448, 1065
BstV1I	GCAGC	2 cut(s)	279, 1100
BstX2I	RGATCY	2 cut(s)	157, 301
BstYI	RGATCY	2 cut(s)	157, 301
Bsu15I	ATCGAT	1 cut(s)	1206
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	5 cut(s)	462, 702, 865, 1099, 1149
BsuTUI	ATCGAT	1 cut(s)	1206
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	779, 1147
Cac8I	GCNNGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	2 cut(s)	6, 744
Cfr13I	GGNCC	4 cut(s)	701, 864, 1097, 1098
ClaI	ATCGAT	1 cut(s)	1206
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	168, 917
CviAII	CATG	3 cut(s)	686, 933, 943
CviQI	GTAC	2 cut(s)	168, 917
DdeI	CTNAG	5 cut(s)	76, 161, 678, 887, 998
DpnI	GATC	7 cut(s)	159, 303, 361, 852, 858, 1205, 1272
DpnII	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
DraI	TTTAAA	1 cut(s)	1057
Eam1104I	CTCTTC	4 cut(s)	126, 216, 1209, 1236
EarI	CTCTTC	4 cut(s)	126, 216, 1209, 1236
Eco24I	GRGCYC	1 cut(s)	1101
Eco57I	CTGAAG	4 cut(s)	1220, 1233, 1260, 1287
Eco91I	GGTNACC	1 cut(s)	1011
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	1097, 1098
EcoO65I	GGTNACC	1 cut(s)	1011
EcoRII	CCWGG	3 cut(s)	632, 796, 866
EcoT38I	GRGCYC	1 cut(s)	1101
FaeI	CATG	3 cut(s)	689, 936, 946
FatI	CATG	3 cut(s)	685, 932, 942
FauI	CCCGC	2 cut(s)	410, 1070
Fnu4HI	GCNGC	2 cut(s)	268, 1114
FokI	GGATG	2 cut(s)	786, 1154
FriOI	GRGCYC	1 cut(s)	1101
Fsp4HI	GCNGC	2 cut(s)	268, 1114
FspBI	CTAG	2 cut(s)	63, 290
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 743
GluI	GCNGC	2 cut(s)	268, 1114
HaeIII	GGCC	5 cut(s)	462, 702, 865, 1099, 1149
HapII	CCGG	4 cut(s)	579, 623, 725, 862
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	6, 744
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	689, 936, 946
Hin6I	GCGC	2 cut(s)	4, 742
HinP1I	GCGC	2 cut(s)	4, 742
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	6 cut(s)	530, 721, 1119, 1174, 1223, 1250
HpaII	CCGG	4 cut(s)	579, 623, 725, 862
HphI	GGTGA	2 cut(s)	619, 1005
Hpy166II	GTNNAC	6 cut(s)	228, 371, 639, 735, 917, 1123
Hpy188I	TCNGA	5 cut(s)	203, 210, 346, 679, 890
Hpy188III	TCNNGA	9 cut(s)	63, 218, 251, 290, 593, 623, 725, 854, 943
Hpy8I	GTNNAC	6 cut(s)	228, 371, 639, 735, 917, 1123
HpyAV	CCTTC	7 cut(s)	198, 248, 515, 755, 1032, 1088, 1139
HpyCH4III	ACNGT	6 cut(s)	101, 576, 847, 914, 1182, 1282
HpyCH4IV	ACGT	4 cut(s)	47, 597, 953, 1125
HpyCH4V	TGCA	6 cut(s)	173, 267, 283, 437, 490, 1108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 1105
HpyF3I	CTNAG	5 cut(s)	76, 161, 678, 887, 998
HpySE526I	ACGT	4 cut(s)	47, 597, 953, 1125
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	689, 936, 946
HspAI	GCGC	2 cut(s)	4, 742
Kpn2I	TCCGGA	2 cut(s)	622, 724
Kzo9I	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	279, 1100
LweI	GCATC	4 cut(s)	1095, 1198, 1225, 1252
MaeI	CTAG	2 cut(s)	63, 290
MaeII	ACGT	4 cut(s)	47, 597, 953, 1125
MaeIII	GTNAC	5 cut(s)	40, 325, 593, 895, 1011
MalI	GATC	7 cut(s)	159, 303, 361, 852, 858, 1205, 1272
MboI	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
MboII	GAAGA	6 cut(s)	143, 233, 1213, 1226, 1253, 1280
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	2 cut(s)	157, 301
MhlI	GDGCHC	2 cut(s)	841, 1101
MlyI	GAGTC	4 cut(s)	539, 1128, 1217, 1244
MmeI	TCCRAC	2 cut(s)	135, 359
MnlI	CCTC	4 cut(s)	73, 470, 808, 1132
MroI	TCCGGA	2 cut(s)	622, 724
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	6 cut(s)	111, 213, 561, 909, 1038, 1056
MspI	CCGG	4 cut(s)	579, 623, 725, 862
MspR9I	CCNGG	3 cut(s)	634, 798, 868
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	3 cut(s)	634, 798, 868
MvnI	CGCG	2 cut(s)	448, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	836, 1105
NdeII	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
NlaIII	CATG	3 cut(s)	689, 936, 946
NlaIV	GGNNCC	2 cut(s)	1099, 1100
NmuCI	GTSAC	3 cut(s)	593, 895, 1011
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	936
NspV	TTCGAA	1 cut(s)	1044
PagI	TCATGA	1 cut(s)	942
PasI	CCCWGGG	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	721, 1174
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	2 cut(s)	269, 1115
PleI	GAGTC	4 cut(s)	538, 1127, 1217, 1244
PpsI	GAGTC	4 cut(s)	538, 1127, 1217, 1244
PshBI	ATTAAT	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	711
Psp1406I	AACGTT	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	632, 796, 866
PspEI	GGTNACC	1 cut(s)	1011
PspGI	CCWGG	3 cut(s)	632, 796, 866
PspN4I	GGNNCC	2 cut(s)	1099, 1100
PspOMI	GGGCCC	1 cut(s)	1097
PspPI	GGNCC	4 cut(s)	701, 864, 1097, 1098
PsuI	RGATCY	2 cut(s)	157, 301
RsaI	GTAC	2 cut(s)	169, 918
RsaNI	GTAC	2 cut(s)	168, 917
SaqAI	TTAA	6 cut(s)	111, 213, 561, 909, 1038, 1056
SatI	GCNGC	2 cut(s)	268, 1114
Sau3AI	GATC	7 cut(s)	157, 301, 359, 850, 856, 1203, 1270
Sau96I	GGNCC	4 cut(s)	701, 864, 1097, 1098
SchI	GAGTC	4 cut(s)	539, 1128, 1217, 1244
ScrFI	CCNGG	3 cut(s)	634, 798, 868
SduI	GDGCHC	2 cut(s)	841, 1101
SfaNI	GCATC	4 cut(s)	1095, 1198, 1225, 1252
SfuI	TTCGAA	1 cut(s)	1044
SsiI	CCGC	7 cut(s)	36, 165, 243, 417, 446, 1063, 1116
SspMI	CTAG	2 cut(s)	63, 290
StyD4I	CCNGG	3 cut(s)	632, 796, 866
TaaI	ACNGT	6 cut(s)	101, 576, 847, 914, 1182, 1282
TaiI	ACGT	4 cut(s)	50, 600, 956, 1128
TaqI	TCGA	8 cut(s)	21, 362, 753, 855, 978, 1044, 1206, 1273
TfiI	GAWTC	2 cut(s)	721, 1174
Tru1I	TTAA	6 cut(s)	111, 213, 561, 909, 1038, 1056
Tru9I	TTAA	6 cut(s)	111, 213, 561, 909, 1038, 1056
TseFI	GTSAC	3 cut(s)	593, 895, 1011
TseI	GCWGC	2 cut(s)	267, 1113
Tsp45I	GTSAC	3 cut(s)	593, 895, 1011
TspDTI	ATGAA	4 cut(s)	152, 180, 585, 1158
TspGWI	ACGGA	3 cut(s)	388, 1015, 1103
VspI	ATTAAT	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	148
XapI	RAATTY	7 cut(s)	441, 495, 616, 713, 779, 802, 1052
XbaI	TCTAGA	2 cut(s)	62, 289
XceI	RCATGY	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	63, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.