Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007121.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

76173 .. 76892

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007121.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggacttgcctaattgctatgaactgtccggcaatctggcaagtgacgtggcaaaggtgaaaaagaatttaccggataattcctggtcaacagctccgtcgtttctcaatttctcatgtcgggttttctttgagggcccgatttacaaatttgggattccggagtggttcacttggcgcagggatttcgatatggaaggacttcaaggatgtggatttagaattgattttcctggaaatttcaaatgggaggacaaaggattggctttctgtgctcaaattgttgatcaccagccctgggctgtgagacccagaacagtcacaatctacattaacggtgtatgcatcactaaagcatacctaacggtgacgagaacgtccttgtggggatacttgccattcgatactataatagaacggctgagtgagagtgggtcaccaccaccttccgtgtgtctggttaagttcgaaattgaatttgaaaccagcgatggatggtctaacaagattaaggacgaagggcccccgatgcaaagctgcggagtccaccattttccatttgtaatgccagaggatgaaggccaatttgtaaatgattgtcaaaggattccaccgttttccataagagagctgaagatcgatgctgaagagactgactcctactacgatgctgaagagattgactcctactacgatgctgaagatcgactaactgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

239

Amino Acids

27.44

Weight (kDa)

4.55

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	1 cut(s)	540
AcsI	RAATTY	4 cut(s)	67, 149, 238, 476
AcuI	CTGAAG	4 cut(s)	653, 666, 693, 720
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	206, 244, 476, 482
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	83, 232, 296
AluBI	AGCT	3 cut(s)	95, 537, 631
AluI	AGCT	3 cut(s)	95, 537, 631
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	301, 644
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	3 cut(s)	136, 521, 580
ApaI	GGGCCC	2 cut(s)	140, 525
ApeKI	GCWGC	1 cut(s)	537
ApoI	RAATTY	4 cut(s)	67, 149, 238, 476
ArsI	GACNNNNNNTTYG	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	136, 137, 521, 522
AsuHPI	GGTGA	4 cut(s)	70, 281, 379, 429
AsuII	TTCGAA	1 cut(s)	468
BaeGI	GKGCMC	2 cut(s)	140, 525
BanII	GRGCYC	2 cut(s)	140, 525
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	485, 489
BceAI	ACGGC	1 cut(s)	434
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	3 cut(s)	85, 234, 298
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	301, 644
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
Bme1390I	CCNGG	3 cut(s)	85, 234, 298
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	136, 137, 521, 522
BmiI	GGNNCC	3 cut(s)	138, 523, 524
BmrFI	CCNGG	3 cut(s)	85, 234, 298
BmsI	GCATC	5 cut(s)	354, 519, 631, 658, 685
BplI	GAGNNNNNCTC	4 cut(s)	641, 673, 668, 700
Bpu14I	TTCGAA	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	296, 297
BsaWI	WCCGGW	2 cut(s)	73, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	3 cut(s)	85, 234, 298
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	296, 297
BseGI	GGATG	3 cut(s)	215, 500, 580
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	413
BseSI	GKGCMC	2 cut(s)	140, 525
BseXI	GCAGC	1 cut(s)	524
BshFI	GGCC	3 cut(s)	138, 523, 582
BshVI	ATCGAT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	30, 74, 161
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	301, 644
BsnI	GGCC	3 cut(s)	138, 523, 582
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	468
Bsp120I	GGGCCC	2 cut(s)	136, 521
Bsp1286I	GDGCHC	3 cut(s)	140, 277, 525
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	286, 636, 703
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	3 cut(s)	138, 523, 582
BspCNI	CTCAG	1 cut(s)	414
BspDI	ATCGAT	1 cut(s)	639
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	138, 523, 524
BspT104I	TTCGAA	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	296, 297
BssMI	GATC	3 cut(s)	286, 636, 703
Bst2UI	CCWGG	3 cut(s)	85, 234, 298
Bst4CI	ACNGT	6 cut(s)	27, 319, 338, 367, 615, 715
Bst6I	CTCTTC	2 cut(s)	642, 669
BstBI	TTCGAA	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	422
BstEII	GGTNACC	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	215, 500, 580
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	289, 639, 706
BstMAI	GTCTC	2 cut(s)	301, 644
BstMBI	GATC	3 cut(s)	286, 636, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 529
BstNI	CCWGG	3 cut(s)	85, 234, 298
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	83, 232, 296
BstSLI	GKGCMC	2 cut(s)	140, 525
BstV1I	GCAGC	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	138, 523, 582
BsuTUI	ATCGAT	1 cut(s)	639
BtgZI	GCGATG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	215, 500, 580
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	136, 137, 521, 522
ClaI	ATCGAT	1 cut(s)	639
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	3 cut(s)	288, 638, 705
DpnII	GATC	3 cut(s)	286, 636, 703
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	642, 669
EarI	CTCTTC	2 cut(s)	642, 669
Eco24I	GRGCYC	2 cut(s)	140, 525
Eco31I	GGTCTC	1 cut(s)	301
Eco57I	CTGAAG	4 cut(s)	653, 666, 693, 720
Eco91I	GGTNACC	1 cut(s)	435
EcoO109I	RGGNCCY	3 cut(s)	136, 521, 522
EcoO65I	GGTNACC	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	83, 232, 296
EcoT22I	ATGCAT	1 cut(s)	347
EcoT38I	GRGCYC	2 cut(s)	140, 525
FaeI	CATG	1 cut(s)	120
FaiI	YATR	7 cut(s)	21, 118, 194, 343, 358, 410, 623
FatI	CATG	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	3 cut(s)	222, 507, 587
FriOI	GRGCYC	2 cut(s)	140, 525
Fsp4HI	GCNGC	1 cut(s)	538
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	538
HaeIII	GGCC	3 cut(s)	138, 523, 582
HapII	CCGG	3 cut(s)	30, 74, 161
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	5 cut(s)	157, 543, 607, 656, 683
HpaII	CCGG	3 cut(s)	30, 74, 161
HphI	GGTGA	4 cut(s)	70, 281, 379, 429
Hpy166II	GTNNAC	3 cut(s)	90, 171, 547
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	90, 171, 547
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	191, 456, 512, 572
HpyCH4III	ACNGT	6 cut(s)	27, 319, 338, 367, 615, 715
HpyCH4IV	ACGT	2 cut(s)	48, 377
HpyCH4V	TGCA	2 cut(s)	345, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 529
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	2 cut(s)	48, 377
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	286, 636, 703
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	5 cut(s)	354, 519, 631, 658, 685
MaeII	ACGT	2 cut(s)	48, 377
MaeIII	GTNAC	4 cut(s)	44, 319, 367, 435
MalI	GATC	3 cut(s)	288, 638, 705
MboI	GATC	3 cut(s)	286, 636, 703
MboII	GAAGA	4 cut(s)	646, 659, 686, 713
MhlI	GDGCHC	3 cut(s)	140, 277, 525
MlyI	GAGTC	3 cut(s)	552, 650, 677
MnlI	CCTC	3 cut(s)	127, 244, 565
Mph1103I	ATGCAT	1 cut(s)	347
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	333, 462, 510
MspI	CCGG	3 cut(s)	30, 74, 161
MspR9I	CCNGG	3 cut(s)	85, 234, 298
MvaI	CCWGG	3 cut(s)	85, 234, 298
MwoI	GCNNNNNNNGC	2 cut(s)	272, 529
NdeII	GATC	3 cut(s)	286, 636, 703
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	3 cut(s)	138, 523, 524
NmuCI	GTSAC	4 cut(s)	44, 319, 367, 435
NsiI	ATGCAT	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	468
PasI	CCCWGGG	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	157, 607
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	539
PleI	GAGTC	3 cut(s)	551, 650, 677
PpsI	GAGTC	3 cut(s)	551, 650, 677
Psp6I	CCWGG	3 cut(s)	83, 232, 296
PspEI	GGTNACC	1 cut(s)	435
PspGI	CCWGG	3 cut(s)	83, 232, 296
PspN4I	GGNNCC	3 cut(s)	138, 523, 524
PspOMI	GGGCCC	2 cut(s)	136, 521
PspPI	GGNCC	4 cut(s)	136, 137, 521, 522
SaqAI	TTAA	3 cut(s)	333, 462, 510
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	3 cut(s)	286, 636, 703
Sau96I	GGNCC	4 cut(s)	136, 137, 521, 522
SchI	GAGTC	3 cut(s)	552, 650, 677
ScrFI	CCNGG	3 cut(s)	85, 234, 298
SduI	GDGCHC	3 cut(s)	140, 277, 525
SetI	ASST	8 cut(s)	51, 60, 97, 363, 380, 448, 539, 633
SfaNI	GCATC	5 cut(s)	354, 519, 631, 658, 685
SfuI	TTCGAA	1 cut(s)	468
SsiI	CCGC	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	83, 232, 296
TaaI	ACNGT	6 cut(s)	27, 319, 338, 367, 615, 715
TaiI	ACGT	2 cut(s)	51, 380
TaqI	TCGA	5 cut(s)	189, 402, 468, 639, 706
TfiI	GAWTC	2 cut(s)	157, 607
Tru1I	TTAA	3 cut(s)	333, 462, 510
Tru9I	TTAA	3 cut(s)	333, 462, 510
TseFI	GTSAC	4 cut(s)	44, 319, 367, 435
TseI	GCWGC	1 cut(s)	537
Tsp45I	GTSAC	4 cut(s)	44, 319, 367, 435
TspDTI	ATGAA	2 cut(s)	36, 591
TspGWI	ACGGA	2 cut(s)	87, 439
XapI	RAATTY	4 cut(s)	67, 149, 238, 476
XmnI	GAANNNNTTC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.