Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

95164 .. 96506

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgcgcaatttgaaatcagtcgatttgggaaattgcaatggtgcaacaacattttcctacttctctagattgccaaacttagaggagttgaaaataagagacagtaaaaaagttaagaagtttgaaattgtggaagagatgaaatccttgaaaaggttggatctaagccgtactgcaatcagagaattgccttcatcaacaattagatgtctcattaatctggaagagttaactttatcatactgccataaacttaaacatgtgccgtgcagcatttttgagttgcaacatctagagcttttggatctctcttattgtaaaaagctggtaacatttccaacaaagtcagggttttcaacgggatcgaccagtttacaggacaagcactatgttccattattcgtcaatttgaacaattgcaatcgtctcgtagaaattgcagaaattccgcgagaaagatatgacctagatgcgagtggctgctatggactgcaaaaaatttcaaaattgtcaaatattttggaaggtaaagagtcaaaattgaccccttttatggacttgcttaagtgctatgaactgtccggcaatctggctcgtgacgtggcaaaggtgaaaaagaatttaccggataattcctggtcaacagctccgtcgtttctcaatttctcatgtcgggttttctttgagggcccgatttacaaatttgggattccggagtggttcacttggcgcagggatttcgatatggaaggacttcaaggatgtgaagaatttagaattgattttcctggaaatttcaaatgggaggacaaaggattggctttctgtgctcaaactgttgataacgatcaccagcgctgggctatgagatcatgtttcagaatagtcacaatctacgttaacgctgtatgcatcactgaagtatacctgatgacgggatggtccgtgtggggatacttgccattcgatactattatagaacggctgagtgagagtgggtcaccaccaccttccgtgtgtctggttcagattgaatttaaaacccgcgatgtatggtctaacgagattaaggacgaagggcccccgatgcaaagctgcggagtccacgttgtaatgccagaggatgaaggccaatttgttttgagcttaccgaccccttcagtcaaacaaggcaagccatacctccaccacatatgtggtcgaatttcgccacacttatcactgaagaacgactgccatctaacgctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

416

Amino Acids

47.72

Weight (kDa)

7.09

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	940
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	2 cut(s)	451, 1047
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	3 cut(s)	449, 1045, 1098
AclWI	GGATC	3 cut(s)	168, 312, 370
AcsI	RAATTY	8 cut(s)	444, 498, 619, 701, 770, 793, 1034, 1203
AcuI	CTGAAG	3 cut(s)	939, 1143, 1244
AfaI	GTAC	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	857
AfiI	CCNNNNNNNGG	4 cut(s)	153, 553, 859, 934
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	635, 787
AleI	CACNNNNGTG	1 cut(s)	1194
AluBI	AGCT	5 cut(s)	298, 325, 647, 1095, 1146
AluI	AGCT	5 cut(s)	298, 325, 647, 1095, 1146
Alw21I	GWGCWC	1 cut(s)	832
Alw26I	GTCTC	3 cut(s)	93, 215, 431
AlwI	GGATC	3 cut(s)	168, 312, 370
Aor13HI	TCCGGA	1 cut(s)	712
Aor51HI	AGCGCT	1 cut(s)	857
AoxI	GGCC	3 cut(s)	688, 1079, 1129
ApaI	GGGCCC	2 cut(s)	692, 1083
ApeKI	GCWGC	3 cut(s)	270, 480, 1095
ApoI	RAATTY	8 cut(s)	444, 498, 619, 701, 770, 793, 1034, 1203
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	3 cut(s)	6, 732, 858
AspS9I	GGNCC	5 cut(s)	688, 689, 942, 1079, 1080
AsuHPI	GGTGA	3 cut(s)	622, 842, 993
AvaII	GGWCC	1 cut(s)	942
BaeGI	GKGCMC	2 cut(s)	692, 1083
BanII	GRGCYC	2 cut(s)	692, 1083
BauI	CACGAG	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	832
BbvI	GCAGC	3 cut(s)	282, 467, 1082
BccI	CCATC	2 cut(s)	933, 1245
BceAI	ACGGC	3 cut(s)	153, 250, 998
BcgI	CGANNNNNNTGC	4 cut(s)	409, 443, 721, 755
BciT130I	CCWGG	2 cut(s)	637, 789
BciVI	GTATCC	1 cut(s)	947
BcoDI	GTCTC	3 cut(s)	93, 215, 431
BfaI	CTAG	3 cut(s)	66, 293, 467
BfoI	RGCGCY	1 cut(s)	859
BfrI	CTTAAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	947
BisI	GCNGC	3 cut(s)	271, 481, 1096
BlsI	GCNGC	3 cut(s)	272, 482, 1097
Bme1390I	CCNGG	2 cut(s)	637, 789
Bme18I	GGWCC	1 cut(s)	942
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	5 cut(s)	688, 689, 942, 1079, 1080
BmiI	GGNNCC	3 cut(s)	690, 1081, 1082
BmrFI	CCNGG	2 cut(s)	637, 789
BmsI	GCATC	3 cut(s)	460, 921, 1077
BsaBI	GATNNNNATC	1 cut(s)	846
BsaWI	WCCGGW	2 cut(s)	625, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 553, 859, 934
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	846
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	637, 789
BseGI	GGATG	3 cut(s)	767, 944, 1129
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	4 cut(s)	153, 553, 859, 934
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	977
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	2 cut(s)	692, 1083
BseXI	GCAGC	3 cut(s)	282, 467, 1082
BseYI	CCCAGC	1 cut(s)	858
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	2 cut(s)	451, 1047
BshFI	GGCC	3 cut(s)	690, 1081, 1131
BsiHKAI	GWGCWC	1 cut(s)	832
BsiSI	CCGG	3 cut(s)	582, 626, 713
BslI	CCNNNNNNNGG	4 cut(s)	153, 553, 859, 934
BsmAI	GTCTC	3 cut(s)	93, 215, 431
BsmBI	CGTCTC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	690, 1081, 1131
Bsp120I	GGGCCC	2 cut(s)	688, 1079
Bsp1286I	GDGCHC	3 cut(s)	692, 832, 1083
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	5 cut(s)	160, 304, 362, 847, 869
BspACI	CCGC	3 cut(s)	449, 1045, 1098
BspANI	GGCC	3 cut(s)	690, 1081, 1131
BspCNI	CTCAG	1 cut(s)	978
BspEI	TCCGGA	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	451, 1047
BspLI	GGNNCC	3 cut(s)	690, 1081, 1082
BspPI	GGATC	3 cut(s)	168, 312, 370
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	160, 304, 362, 847, 869
BssNAI	GTATAC	1 cut(s)	925
BssSI	CACGAG	1 cut(s)	594
Bst1107I	GTATAC	1 cut(s)	925
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	637, 789
Bst4CI	ACNGT	3 cut(s)	104, 579, 838
Bst6I	CTCTTC	2 cut(s)	129, 219
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	1175
BstDEI	CTNAG	3 cut(s)	79, 164, 986
BstEII	GGTNACC	1 cut(s)	999
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	767, 944, 1129
BstFNI	CGCG	2 cut(s)	451, 1047
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	3 cut(s)	6, 732, 858
BstKTI	GATC	5 cut(s)	163, 307, 365, 850, 872
BstMAI	GTCTC	3 cut(s)	93, 215, 431
BstMBI	GATC	5 cut(s)	160, 304, 362, 847, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	827, 1087
BstNI	CCWGG	2 cut(s)	637, 789
BstNSI	RCATGY	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	999
BstSCI	CCNGG	2 cut(s)	635, 787
BstSLI	GKGCMC	2 cut(s)	692, 1083
BstUI	CGCG	2 cut(s)	451, 1047
BstV1I	GCAGC	3 cut(s)	282, 467, 1082
BstX2I	RGATCY	2 cut(s)	160, 304
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BstYI	RGATCY	2 cut(s)	160, 304
BstZ17I	GTATAC	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	947
BsuRI	GGCC	3 cut(s)	690, 1081, 1131
BtgZI	GCGATG	1 cut(s)	1062
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	767, 944, 1129
BtsIMutI	CAGTG	2 cut(s)	915, 1220
Cac8I	GCNNGC	1 cut(s)	1175
CfoI	GCGC	3 cut(s)	6, 732, 858
Cfr13I	GGNCC	5 cut(s)	688, 689, 942, 1079, 1080
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	260, 669, 873
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	3 cut(s)	79, 164, 986
DpnI	GATC	5 cut(s)	162, 306, 364, 849, 871
DpnII	GATC	5 cut(s)	160, 304, 362, 847, 869
DraI	TTTAAA	1 cut(s)	1039
DrdI	GACNNNNNNGTC	1 cut(s)	940
DseDI	GACNNNNNNGTC	1 cut(s)	940
Eam1104I	CTCTTC	2 cut(s)	129, 219
EarI	CTCTTC	2 cut(s)	129, 219
Eco24I	GRGCYC	2 cut(s)	692, 1083
Eco47I	GGWCC	1 cut(s)	942
Eco47III	AGCGCT	1 cut(s)	857
Eco57I	CTGAAG	3 cut(s)	939, 1143, 1244
Eco91I	GGTNACC	1 cut(s)	999
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoO109I	RGGNCCY	3 cut(s)	688, 1079, 1080
EcoO65I	GGTNACC	1 cut(s)	999
EcoRII	CCWGG	2 cut(s)	635, 787
EcoT22I	ATGCAT	1 cut(s)	914
EcoT38I	GRGCYC	2 cut(s)	692, 1083
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	3 cut(s)	263, 672, 876
FatI	CATG	3 cut(s)	259, 668, 872
FauI	CCCGC	1 cut(s)	1052
FauNDI	CATATG	1 cut(s)	1193
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	3 cut(s)	271, 481, 1096
FokI	GGATG	3 cut(s)	774, 951, 1136
FriOI	GRGCYC	2 cut(s)	692, 1083
Fsp4HI	GCNGC	3 cut(s)	271, 481, 1096
FspBI	CTAG	3 cut(s)	66, 293, 467
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 731, 857
GluI	GCNGC	3 cut(s)	271, 481, 1096
GsaI	CCCAGC	1 cut(s)	862
HaeII	RGCGCY	1 cut(s)	859
HaeIII	GGCC	3 cut(s)	690, 1081, 1131
HapII	CCGG	3 cut(s)	582, 626, 713
HhaI	GCGC	3 cut(s)	6, 732, 858
Hin1II	CATG	3 cut(s)	263, 672, 876
Hin6I	GCGC	3 cut(s)	4, 730, 856
HinP1I	GCGC	3 cut(s)	4, 730, 856
HincII	GTYRAC	3 cut(s)	231, 642, 901
HindII	GTYRAC	3 cut(s)	231, 642, 901
HinfI	GANTC	3 cut(s)	533, 709, 1101
HpaI	GTTAAC	2 cut(s)	231, 901
HpaII	CCGG	3 cut(s)	582, 626, 713
HphI	GGTGA	3 cut(s)	622, 842, 993
Hpy166II	GTNNAC	7 cut(s)	231, 374, 642, 723, 901, 925, 1105
Hpy188I	TCNGA	3 cut(s)	182, 881, 1029
Hpy188III	TCNNGA	5 cut(s)	66, 221, 293, 596, 713
Hpy8I	GTNNAC	7 cut(s)	231, 374, 642, 723, 901, 925, 1105
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	7 cut(s)	201, 518, 743, 1020, 1070, 1121, 1167
HpyCH4III	ACNGT	3 cut(s)	104, 579, 838
HpyCH4IV	ACGT	3 cut(s)	600, 897, 1107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	827, 1087
HpyF3I	CTNAG	3 cut(s)	79, 164, 986
HpySE526I	ACGT	3 cut(s)	600, 897, 1107
Hsp92II	CATG	3 cut(s)	263, 672, 876
HspAI	GCGC	3 cut(s)	4, 730, 856
Kpn2I	TCCGGA	1 cut(s)	712
KspAI	GTTAAC	2 cut(s)	231, 901
Kzo9I	GATC	5 cut(s)	160, 304, 362, 847, 869
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	3 cut(s)	282, 467, 1082
LweI	GCATC	3 cut(s)	460, 921, 1077
MaeI	CTAG	3 cut(s)	66, 293, 467
MaeII	ACGT	3 cut(s)	600, 897, 1107
MaeIII	GTNAC	4 cut(s)	328, 596, 886, 999
MalI	GATC	5 cut(s)	162, 306, 364, 849, 871
MboI	GATC	5 cut(s)	160, 304, 362, 847, 869
MboII	GAAGA	4 cut(s)	146, 236, 779, 1237
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	2 cut(s)	160, 304
MhlI	GDGCHC	3 cut(s)	692, 832, 1083
MlyI	GAGTC	2 cut(s)	542, 1110
MmeI	TCCRAC	2 cut(s)	138, 362
MnlI	CCTC	5 cut(s)	76, 679, 799, 1114, 1193
Mph1103I	ATGCAT	1 cut(s)	914
MroI	TCCGGA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	8 cut(s)	114, 216, 230, 255, 564, 900, 1038, 1068
MslI	CAYNNNNRTG	1 cut(s)	1194
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	3 cut(s)	582, 626, 713
MspR9I	CCNGG	2 cut(s)	637, 789
MunI	CAATTG	1 cut(s)	415
MvaI	CCWGG	2 cut(s)	637, 789
MvnI	CGCG	2 cut(s)	451, 1047
MwoI	GCNNNNNNNGC	2 cut(s)	827, 1087
NdeI	CATATG	1 cut(s)	1193
NdeII	GATC	5 cut(s)	160, 304, 362, 847, 869
NlaIII	CATG	3 cut(s)	263, 672, 876
NlaIV	GGNNCC	3 cut(s)	690, 1081, 1082
NmuCI	GTSAC	3 cut(s)	596, 886, 999
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	914
NspI	RCATGY	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	1194
PciI	ACATGT	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	3 cut(s)	272, 482, 1097
PleI	GAGTC	2 cut(s)	541, 1109
PpsI	GAGTC	2 cut(s)	541, 1109
PscI	ACATGT	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	635, 787
PspEI	GGTNACC	1 cut(s)	999
PspFI	CCCAGC	1 cut(s)	858
PspGI	CCWGG	2 cut(s)	635, 787
PspN4I	GGNNCC	3 cut(s)	690, 1081, 1082
PspOMI	GGGCCC	2 cut(s)	688, 1079
PspPI	GGNCC	5 cut(s)	688, 689, 942, 1079, 1080
PsuI	RGATCY	2 cut(s)	160, 304
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	1194
SaqAI	TTAA	8 cut(s)	114, 216, 230, 255, 564, 900, 1038, 1068
SatI	GCNGC	3 cut(s)	271, 481, 1096
Sau3AI	GATC	5 cut(s)	160, 304, 362, 847, 869
Sau96I	GGNCC	5 cut(s)	688, 689, 942, 1079, 1080
SchI	GAGTC	2 cut(s)	542, 1110
ScrFI	CCNGG	2 cut(s)	637, 789
SduI	GDGCHC	3 cut(s)	692, 832, 1083
SfaNI	GCATC	3 cut(s)	460, 921, 1077
SinI	GGWCC	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	1194
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SsiI	CCGC	3 cut(s)	449, 1045, 1098
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	66, 293, 467
StyD4I	CCNGG	2 cut(s)	635, 787
TaaI	ACNGT	3 cut(s)	104, 579, 838
TaiI	ACGT	3 cut(s)	603, 900, 1110
TaqI	TCGA	5 cut(s)	21, 365, 741, 966, 1201
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	8 cut(s)	114, 216, 230, 255, 564, 900, 1038, 1068
Tru9I	TTAA	8 cut(s)	114, 216, 230, 255, 564, 900, 1038, 1068
TscAI	CASTG	2 cut(s)	922, 1227
TseFI	GTSAC	3 cut(s)	596, 886, 999
TseI	GCWGC	3 cut(s)	270, 480, 1095
Tsp45I	GTSAC	3 cut(s)	596, 886, 999
TspDTI	ATGAA	4 cut(s)	155, 183, 588, 1140
TspGWI	ACGGA	3 cut(s)	639, 934, 1003
TspRI	CASTG	2 cut(s)	922, 1227
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	942
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	8 cut(s)	444, 498, 619, 701, 770, 793, 1034, 1203
XbaI	TCTAGA	2 cut(s)	65, 292
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1193
XmiI	GTMKAC	1 cut(s)	924
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	3 cut(s)	66, 293, 467
Zsp2I	ATGCAT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.