Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

87211857 .. 87212348

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG548800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGGACTTCAAGGATATGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTGGCTTTCTGTGCTCAAACTGTTGATCTCGATCACCCGTCCTCGGCTATGAGAACAGTCGCAATGTACATTAACGGAGTACACGTCACTCAAACACCGTGGCTAGCGCCGGCTTGGTCCGCGTGGGGATATTTGTCATTCGATACTATAATAGAACGGCTGAGTGAGAGTGGGTCCCCACCACCTTCGGTGTGTCTGGTTAAGATTGAACTTAAAACCTCACGCGACGAAGGGCCCCCGATGCTAAGCTGCGGAGTCCACGTTGTAATGCCAGATAATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCGTTTTCCATAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGATTGACTCCTACTACGATGCTGAAGATCGACTAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

163

Amino Acids

18.41

Weight (kDa)

4.32

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	191, 294
AciI	CCGC	2 cut(s)	189, 321
AcsI	RAATTY	2 cut(s)	23, 46
AcuI	CTGAAG	4 cut(s)	425, 438, 465, 492
AfaI	GTAC	2 cut(s)	137, 150
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	14, 52, 278
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	318, 403
AluI	AGCT	2 cut(s)	318, 403
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	302, 352
ApaI	GGGCCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	2 cut(s)	23, 46
ArsI	GACNNNNNNTTYG	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	4 cut(s)	186, 243, 302, 303
AsuHPI	GGTGA	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	2 cut(s)	186, 243
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	186, 243
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	4 cut(s)	186, 243, 302, 303
BmiI	GGNNCC	4 cut(s)	244, 245, 304, 305
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	4 cut(s)	300, 403, 430, 457
BmtI	GCTAGC	1 cut(s)	176
BplI	GAGNNNNNCTC	4 cut(s)	413, 445, 440, 472
Bpu1102I	GCTNAGC	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	111, 167
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	111, 167
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	191, 294
BshFI	GGCC	2 cut(s)	304, 354
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	304, 354
Bsp120I	GGGCCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	85, 306
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	94, 100, 408, 475
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	2 cut(s)	189, 321
BspANI	GGCC	2 cut(s)	304, 354
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	2 cut(s)	191, 294
BspLI	GGNNCC	4 cut(s)	244, 245, 304, 305
BspOI	GCTAGC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	111, 167
BssMI	GATC	4 cut(s)	94, 100, 408, 475
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	5 cut(s)	91, 127, 168, 387, 487
Bst6I	CTCTTC	2 cut(s)	414, 441
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	174, 180
BstDEI	CTNAG	2 cut(s)	230, 314
BstDSI	CCRYGG	1 cut(s)	167
BstFNI	CGCG	2 cut(s)	191, 294
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	97, 103, 411, 478
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	94, 100, 408, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 188, 310
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	2 cut(s)	191, 294
BstV1I	GCAGC	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	304, 354
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	174, 180
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	186, 243, 302, 303
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	136, 149
CspCI	CAANNNNNGTGG	2 cut(s)	149, 184
CviJI	RGCY	9 cut(s)	74, 116, 172, 182, 229, 304, 318, 354, 403
CviKI_1	RGCY	9 cut(s)	74, 116, 172, 182, 229, 304, 318, 354, 403
CviQI	GTAC	2 cut(s)	136, 149
DdeI	CTNAG	2 cut(s)	230, 314
DpnI	GATC	4 cut(s)	96, 102, 410, 477
DpnII	GATC	4 cut(s)	94, 100, 408, 475
Eam1104I	CTCTTC	2 cut(s)	414, 441
EarI	CTCTTC	2 cut(s)	414, 441
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	186, 243
Eco57I	CTGAAG	4 cut(s)	425, 438, 465, 492
EcoO109I	RGGNCCY	3 cut(s)	243, 302, 303
EcoRII	CCWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	306
FaiI	YATR	4 cut(s)	21, 119, 218, 395
FaqI	GGGAC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	304, 354
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	324, 379, 428, 455
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	151, 328
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	2 cut(s)	151, 328
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	264, 293, 344
HpyCH4III	ACNGT	5 cut(s)	91, 127, 168, 387, 487
HpyCH4IV	ACGT	2 cut(s)	153, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 188, 310
HpyF3I	CTNAG	2 cut(s)	230, 314
HpySE526I	ACGT	2 cut(s)	153, 330
HspAI	GCGC	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	94, 100, 408, 475
LpnPI	CCDG	5 cut(s)	27, 54, 192, 251, 354
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	4 cut(s)	300, 403, 430, 457
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	153, 330
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	96, 102, 410, 477
MboI	GATC	4 cut(s)	94, 100, 408, 475
MboII	GAAGA	4 cut(s)	418, 431, 458, 485
MhlI	GDGCHC	2 cut(s)	85, 306
MluCI	AATT	4 cut(s)	23, 30, 46, 356
MlyI	GAGTC	3 cut(s)	333, 422, 449
MnlI	CCTC	3 cut(s)	52, 121, 298
MroNI	GCCGGC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	141, 270, 282
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	2 cut(s)	191, 294
MwoI	GCNNNNNNNGC	3 cut(s)	80, 188, 310
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	4 cut(s)	94, 100, 408, 475
NgoMIV	GCCGGC	1 cut(s)	178
NheI	GCTAGC	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	244, 245, 304, 305
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	3 cut(s)	332, 422, 449
PpsI	GAGTC	3 cut(s)	332, 422, 449
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	4 cut(s)	244, 245, 304, 305
PspOMI	GGGCCC	1 cut(s)	302
PspPI	GGNCC	4 cut(s)	186, 243, 302, 303
PspPPI	RGGWCCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	137, 150
RsaNI	GTAC	2 cut(s)	136, 149
SaqAI	TTAA	3 cut(s)	141, 270, 282
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	4 cut(s)	94, 100, 408, 475
Sau96I	GGNCC	4 cut(s)	186, 243, 302, 303
SchI	GAGTC	3 cut(s)	333, 422, 449
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	85, 306
SetI	ASST	6 cut(s)	156, 256, 290, 320, 333, 405
SfaNI	GCATC	4 cut(s)	300, 403, 430, 457
SinI	GGWCC	2 cut(s)	186, 243
Sse9I	AATT	4 cut(s)	23, 30, 46, 356
SsiI	CCGC	2 cut(s)	189, 321
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	5 cut(s)	91, 127, 168, 387, 487
TaiI	ACGT	2 cut(s)	156, 333
TaqI	TCGA	4 cut(s)	99, 210, 411, 478
TasI	AATT	4 cut(s)	23, 30, 46, 356
TatI	WGTACW	2 cut(s)	135, 148
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	141, 270, 282
Tru9I	TTAA	3 cut(s)	141, 270, 282
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	36, 363
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	186, 243
XapI	RAATTY	2 cut(s)	23, 46
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.