Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

87081812 .. 87082410

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG548200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGGACTTCAAGGATGTGAAGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTGGCTTTCTGTGCTCAAACTGTTGATAACGATCACCAGCGCTGGGCTATGAGATCATGTTTCAGAATAGTCACAATCTACGTTAACGGTGTATGCATCACTGAAGTATACCTAATGACGGGATGGTCCGTGTGGGGATACTTGCCATTCGATACTATAATAGAACGGCTGAGTGAGAGTGGGTCACCACCACCTTCCGTGTGTCTGGTTAAGATTGAATTTAAAACCCGCGATGTATGGTCTAACGAGATTAAGGACGAAGGGCCCCCGATGCAAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTTTTGAGCTTACCGACCCCTTCAGTCAAACAAGGCAAGCCATACCTCCACCACATATGTGGTCGAATTTCGCCACACTTATCACTGAAGAACGACTGCCATCTAACGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

168

Amino Acids

19.09

Weight (kDa)

5.46

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	301, 354
AcsI	RAATTY	4 cut(s)	26, 49, 290, 459
AcuI	CTGAAG	3 cut(s)	195, 399, 500
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	115, 190
AgsI	TTSAA	3 cut(s)	14, 55, 290
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	2 cut(s)	351, 402
AluI	AGCT	2 cut(s)	351, 402
Alw21I	GWGCWC	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	335, 385
ApaI	GGGCCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	4 cut(s)	26, 49, 290, 459
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	198, 335, 336
AsuHPI	GGTGA	2 cut(s)	98, 249
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	2 cut(s)	189, 501
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	198, 335, 336
BmiI	GGNNCC	2 cut(s)	337, 338
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	177, 333
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 190
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	45
BseGI	GGATG	3 cut(s)	23, 200, 385
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	115, 190
BseMII	CTCAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	338
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	337, 387
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	115, 190
BsnI	GGCC	2 cut(s)	337, 387
Bsp120I	GGGCCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	88, 339
Bsp143I	GATC	2 cut(s)	103, 125
BspACI	CCGC	2 cut(s)	301, 354
BspANI	GGCC	2 cut(s)	337, 387
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	337, 338
BssMI	GATC	2 cut(s)	103, 125
BssNAI	GTATAC	1 cut(s)	181
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	94, 161
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	23, 200, 385
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	106, 128
BstMBI	GATC	2 cut(s)	103, 125
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 343
BstNI	CCWGG	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstZ17I	GTATAC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	337, 387
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	23, 200, 385
BtsIMutI	CAGTG	2 cut(s)	171, 476
Cac8I	GCNNGC	1 cut(s)	431
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	198, 335, 336
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	8 cut(s)	77, 119, 241, 337, 351, 387, 402, 433
CviKI_1	RGCY	8 cut(s)	77, 119, 241, 337, 351, 387, 402, 433
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	105, 127
DpnII	GATC	2 cut(s)	103, 125
DraI	TTTAAA	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	3 cut(s)	195, 399, 500
Eco91I	GGTNACC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	335, 336
EcoO65I	GGTNACC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	339
FaeI	CATG	1 cut(s)	132
FaiI	YATR	9 cut(s)	122, 130, 166, 181, 230, 310, 436, 449, 451
FatI	CATG	1 cut(s)	128
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	3 cut(s)	30, 207, 392
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	352
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	337, 387
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	357
HpaI	GTTAAC	1 cut(s)	157
HphI	GGTGA	2 cut(s)	98, 249
Hpy166II	GTNNAC	3 cut(s)	157, 181, 361
Hpy188I	TCNGA	1 cut(s)	137
Hpy8I	GTNNAC	3 cut(s)	157, 181, 361
HpyAV	CCTTC	4 cut(s)	276, 326, 377, 423
HpyCH4III	ACNGT	2 cut(s)	94, 161
HpyCH4IV	ACGT	2 cut(s)	153, 363
HpyCH4V	TGCA	2 cut(s)	168, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 343
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	153, 363
Hsp92II	CATG	1 cut(s)	132
HspAI	GCGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	103, 125
LpnPI	CCDG	6 cut(s)	30, 57, 100, 122, 263, 387
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	177, 333
MaeII	ACGT	2 cut(s)	153, 363
MaeIII	GTNAC	2 cut(s)	142, 255
MalI	GATC	2 cut(s)	105, 127
MboI	GATC	2 cut(s)	103, 125
MboII	GAAGA	2 cut(s)	35, 493
MhlI	GDGCHC	2 cut(s)	88, 339
MluCI	AATT	6 cut(s)	26, 33, 49, 290, 389, 459
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	3 cut(s)	55, 370, 449
Mph1103I	ATGCAT	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	4 cut(s)	156, 282, 294, 324
MslI	CAYNNNNRTG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	83, 343
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	2 cut(s)	103, 125
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	2 cut(s)	337, 338
NmuCI	GTSAC	2 cut(s)	142, 255
NsiI	ATGCAT	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	337, 338
PspOMI	GGGCCC	1 cut(s)	335
PspPI	GGNCC	3 cut(s)	198, 335, 336
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	156, 282, 294, 324
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	2 cut(s)	103, 125
Sau96I	GGNCC	3 cut(s)	198, 335, 336
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	88, 339
SetI	ASST	7 cut(s)	156, 186, 268, 353, 366, 404, 441
SfaNI	GCATC	2 cut(s)	177, 333
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	6 cut(s)	26, 33, 49, 290, 389, 459
SsiI	CCGC	2 cut(s)	301, 354
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	94, 161
TaiI	ACGT	2 cut(s)	156, 366
TaqI	TCGA	2 cut(s)	222, 457
TasI	AATT	6 cut(s)	26, 33, 49, 290, 389, 459
Tru1I	TTAA	4 cut(s)	156, 282, 294, 324
Tru9I	TTAA	4 cut(s)	156, 282, 294, 324
TscAI	CASTG	2 cut(s)	178, 483
TseFI	GTSAC	2 cut(s)	142, 255
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	2 cut(s)	142, 255
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	2 cut(s)	190, 259
TspRI	CASTG	2 cut(s)	178, 483
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	4 cut(s)	26, 49, 290, 459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.