Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

86403090 .. 86407781

Gene Structure 4692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGACCACTCAATTTGGGGCCTCTTCTTCTTCCTCTCTCTCTTCCTCTTCTGGTACCATTCAGCCCTCTTTCTCTTCCTCTTGTGCTACCATTCAGTCATATACATATCATGTCTTTTTGAGTTTTAGAGGAGAGGATACGCGCAACACTTTTACAGGCCATTTGCACAACAGTTTGGTTCAGAAGGGAATTAAAACCTTCATAGATGATGGCCTTACAAGAGGAGAAGAAATATCAAGCGTACTTTTTAAAGCAATTAACGAGTCAAAAATTTCTGTCATTGTGTTCTCTGAAAATTATGCTTCCTCAAAATGGTGTTTAGAAGAACTTGTGAAGATCATGCATTGTAATGAATCGAAGCAACAAATTGTATGCCCTATTTTTTACAAGGTAGATCCATCAGATGTACGAAACCAAAAGGGTAGTTTTGGTCAGGCACTCGCTCATCATGATAACTTGGAGAAGGTGGCAGGATGGAAGACAGCTCTTACAAAAGCAGGAAATCTTTCTGGGTGGCATTTCTCACACAGAGGTTGTTTTTTGGAAAATGTTAGAGAAAGATCGTTGGAATATGGAGGCCTGAAAAAACTACAGAAGTTCCTTCTTTCTAAGACTCTAGGGTTGAGAGACTTAGAGGGAACAAGCAAAGTTAAAGGGATCATGGTTCTGAAAGGCGTACCAGATCAACCAATACCCTTGAATAAGAAAAGCTTCTTAAAGTTAAACGGTCTTCAAATTCTTATAATTTGTGGTGATGTATTCTATGGAGATCATGGAGGTTTTCTATGTCAAATGCCTCGGATCTGCACATCACCATTGGGGAACAGACTACAGAATATGCACAATTTGAAATCAGTCGATTTGCGAAATTGCAATGGTGCAACAACGTTTTCCTACTTCTCTAGATTGCCAAACTTAGAGGAGTTGACAATAAGAGATAGTAAAAAAGTCAAAAAGTTTGCAATTGTGGAAGAGATGAAATCCTTGAAAAGGTCAACTTTGAAGACATTTCTCATTTCCTCATGTCGGCAATCCGAGTGTCGGGTTATCTGTGACGGCCCGATTTACAAATTTGGGATTCCGGAGTGGTTCACTTGGCGCAGGGATTTCGATATGGAAGGACTTCAAGGATGTGAAGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTGGCTTTCTGTGCTCAAACTGTTGATCTCGATCACCCGAAACTGGGAACATATTCCAAAACAGTCACAATCTACATTAACGGTGAACGCATCATTGGAGTATTCCTAACCGAGATGAGAGACTCCGTGTGGGGATACTTGCCATTCGATACTATAATAGAACGGCTGAGTGAGAGTGGGTCACCACCACCTTCCGTGTGTCTGGTTAAGTTCGAAATTGAAATTATAACTTACGATCTGTGTCTGATTATGGACATTTGTAGTGAGGTCGAGAGTGGGTCACCCCCGATGCAAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCGTTTTCTATAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

546

Amino Acids

61.41

Weight (kDa)

8.4

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	36 - 187	3.1e-52	TIR domain
TIR_2	PF13676	38 - 133	4.9e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	743, 1412
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	1081
AciI	CCGC	1 cut(s)	1485
AclI	AACGTT	1 cut(s)	887
AclWI	GGATC	3 cut(s)	389, 665, 809
AcsI	RAATTY	5 cut(s)	270, 735, 1070, 1139, 1162
AcuI	CTGAAG	2 cut(s)	1592, 1619
AfaI	GTAC	4 cut(s)	55, 243, 408, 678
AfiI	CCNNNNNNNGG	6 cut(s)	312, 990, 1026, 1041, 1228, 1229
AgsI	TTSAA	8 cut(s)	700, 734, 850, 988, 1003, 1127, 1168, 1406
AjnI	CCWGG	1 cut(s)	1156
AjuI	GAANNNNNNNTTGG	2 cut(s)	1263, 1295
AluBI	AGCT	3 cut(s)	485, 711, 1482
AluI	AGCT	3 cut(s)	485, 711, 1482
Alw21I	GWGCWC	1 cut(s)	1201
Alw26I	GTCTC	4 cut(s)	621, 1299, 1570, 1597
AlwI	GGATC	3 cut(s)	389, 665, 809
Aor13HI	TCCGGA	1 cut(s)	1081
AoxI	GGCC	6 cut(s)	18, 157, 211, 577, 1057, 1516
ApeKI	GCWGC	1 cut(s)	1482
ApoI	RAATTY	5 cut(s)	270, 735, 1070, 1139, 1162
Asp700I	GAANNNNTTC	4 cut(s)	505, 710, 1122, 1237
Asp718I	GGTACC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	144, 1101
AspS9I	GGNCC	2 cut(s)	18, 1058
AsuHPI	GGTGA	6 cut(s)	764, 804, 1211, 1280, 1359, 1458
AsuII	TTCGAA	1 cut(s)	1398
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	3 cut(s)	485, 722, 1010
Bbv12I	GWGCWC	1 cut(s)	1201
BbvI	GCAGC	1 cut(s)	1469
BccI	CCATC	3 cut(s)	203, 406, 468
BceAI	ACGGC	2 cut(s)	1072, 1364
BcgI	CGANNNNNNTGC	2 cut(s)	1090, 1124
BciT130I	CCWGG	1 cut(s)	1158
BciVI	GTATCC	2 cut(s)	130, 1313
BcoDI	GTCTC	4 cut(s)	621, 1299, 1570, 1597
BfaI	CTAG	2 cut(s)	617, 903
BfmI	CTRYAG	2 cut(s)	590, 830
BfuI	GTATCC	2 cut(s)	130, 1313
BisI	GCNGC	1 cut(s)	1483
BlsI	GCNGC	1 cut(s)	1484
Bme1390I	CCNGG	1 cut(s)	1158
BmgT120I	GGNCC	2 cut(s)	18, 1058
BmiI	GGNNCC	2 cut(s)	19, 55
BmrFI	CCNGG	1 cut(s)	1158
BmrI	ACTGGG	1 cut(s)	1238
BmsI	GCATC	5 cut(s)	1284, 1464, 1557, 1584, 1611
BmuI	ACTGGG	1 cut(s)	1238
BpiI	GAAGAC	3 cut(s)	485, 722, 1010
BplI	GAGNNNNNCTC	4 cut(s)	1567, 1599, 1594, 1626
Bpu14I	TTCGAA	1 cut(s)	1398
Bsa29I	ATCGAT	1 cut(s)	1565
BsaBI	GATNNNNATC	1 cut(s)	1215
BsaJI	CCNNGG	1 cut(s)	797
BsaWI	WCCGGW	1 cut(s)	1081
BsaXI	ACNNNNNCTCC	2 cut(s)	1479, 1509
Bsc4I	CCNNNNNNNGG	6 cut(s)	312, 990, 1026, 1041, 1228, 1229
Bse1I	ACTGG	1 cut(s)	1233
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	1 cut(s)	1215
BseAI	TCCGGA	1 cut(s)	1081
BseBI	CCWGG	1 cut(s)	1158
BseCI	ATCGAT	1 cut(s)	1565
BseDI	CCNNGG	1 cut(s)	797
BseGI	GGATG	3 cut(s)	479, 1136, 1516
BseJI	GATNNNNATC	1 cut(s)	1215
BseLI	CCNNNNNNNGG	6 cut(s)	312, 990, 1026, 1041, 1228, 1229
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	1 cut(s)	1343
BseNI	ACTGG	1 cut(s)	1233
BseRI	GAGGAG	3 cut(s)	144, 237, 935
BseXI	GCAGC	1 cut(s)	1469
BsgI	GTGCAG	1 cut(s)	790
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	20, 159, 213, 579, 1059, 1518
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	1565
BsiHKAI	GWGCWC	1 cut(s)	1201
BsiSI	CCGG	1 cut(s)	1082
BslI	CCNNNNNNNGG	6 cut(s)	312, 990, 1026, 1041, 1228, 1229
BsmAI	GTCTC	4 cut(s)	621, 1299, 1570, 1597
BsnI	GGCC	6 cut(s)	20, 159, 213, 579, 1059, 1518
Bsp119I	TTCGAA	1 cut(s)	1398
Bsp1286I	GDGCHC	1 cut(s)	1201
Bsp13I	TCCGGA	1 cut(s)	1081
BspACI	CCGC	1 cut(s)	1485
BspANI	GGCC	6 cut(s)	20, 159, 213, 579, 1059, 1518
BspCNI	CTCAG	1 cut(s)	1344
BspDI	ATCGAT	1 cut(s)	1565
BspEI	TCCGGA	1 cut(s)	1081
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	19, 55
BspPI	GGATC	3 cut(s)	389, 665, 809
BspT104I	TTCGAA	1 cut(s)	1398
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	1233
BssECI	CCNNGG	1 cut(s)	797
Bst2UI	CCWGG	1 cut(s)	1158
Bst4CI	ACNGT	6 cut(s)	173, 728, 1207, 1249, 1268, 1551
Bst6I	CTCTTC	7 cut(s)	28, 46, 52, 79, 966, 1568, 1595
BstBI	TTCGAA	1 cut(s)	1398
BstDEI	CTNAG	4 cut(s)	609, 631, 916, 1352
BstEII	GGTNACC	2 cut(s)	1365, 1464
BstENI	CCTNNNNNAGG	1 cut(s)	988
BstF5I	GGATG	3 cut(s)	479, 1136, 1516
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	144, 1101
BstMAI	GTCTC	4 cut(s)	621, 1299, 1570, 1597
BstMWI	GCNNNNNNNGC	1 cut(s)	1196
BstNI	CCWGG	1 cut(s)	1158
BstPI	GGTNACC	2 cut(s)	1365, 1464
BstSCI	CCNGG	1 cut(s)	1156
BstSFI	CTRYAG	2 cut(s)	590, 830
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	1469
BstV2I	GAAGAC	3 cut(s)	485, 722, 1010
BstX2I	RGATCY	2 cut(s)	394, 801
BstYI	RGATCY	2 cut(s)	394, 801
Bsu15I	ATCGAT	1 cut(s)	1565
BsuI	GTATCC	2 cut(s)	130, 1313
BsuRI	GGCC	6 cut(s)	20, 159, 213, 579, 1059, 1518
BsuTUI	ATCGAT	1 cut(s)	1565
BtsCI	GGATG	3 cut(s)	479, 1136, 1516
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	144, 1101
Cfr13I	GGNCC	2 cut(s)	18, 1058
ClaI	ATCGAT	1 cut(s)	1565
Csp6I	GTAC	4 cut(s)	54, 242, 407, 677
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	6 cut(s)	110, 340, 449, 661, 773, 1023
CviQI	GTAC	4 cut(s)	54, 242, 407, 677
DdeI	CTNAG	4 cut(s)	609, 631, 916, 1352
DraI	TTTAAA	1 cut(s)	250
Eam1104I	CTCTTC	7 cut(s)	28, 46, 52, 79, 966, 1568, 1595
EarI	CTCTTC	7 cut(s)	28, 46, 52, 79, 966, 1568, 1595
Eco147I	AGGCCT	1 cut(s)	579
Eco57I	CTGAAG	2 cut(s)	1592, 1619
Eco91I	GGTNACC	2 cut(s)	1365, 1464
EcoNI	CCTNNNNNAGG	1 cut(s)	988
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	2 cut(s)	1365, 1464
EcoRII	CCWGG	1 cut(s)	1156
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	6 cut(s)	113, 343, 452, 664, 776, 1026
FalI	AAGNNNNNCTT	4 cut(s)	695, 727, 982, 1014
FatI	CATG	6 cut(s)	109, 339, 448, 660, 772, 1022
Fnu4HI	GCNGC	1 cut(s)	1483
FokI	GGATG	3 cut(s)	486, 1143, 1523
Fsp4HI	GCNGC	1 cut(s)	1483
FspBI	CTAG	2 cut(s)	617, 903
GlaI	GCGC	2 cut(s)	143, 1100
GluI	GCNGC	1 cut(s)	1483
HaeIII	GGCC	6 cut(s)	20, 159, 213, 579, 1059, 1518
HapII	CCGG	1 cut(s)	1082
HhaI	GCGC	2 cut(s)	144, 1101
Hin1II	CATG	6 cut(s)	113, 343, 452, 664, 776, 1026
Hin6I	GCGC	2 cut(s)	142, 1099
HinP1I	GCGC	2 cut(s)	142, 1099
HincII	GTYRAC	2 cut(s)	927, 996
HindII	GTYRAC	2 cut(s)	927, 996
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	9 cut(s)	263, 353, 613, 1078, 1307, 1488, 1543, 1582, 1609
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	6 cut(s)	764, 804, 1211, 1280, 1359, 1458
Hpy166II	GTNNAC	5 cut(s)	927, 996, 1092, 1271, 1492
Hpy188I	TCNGA	7 cut(s)	183, 292, 403, 669, 801, 1036, 1431
Hpy188III	TCNNGA	5 cut(s)	449, 903, 1082, 1214, 1456
Hpy8I	GTNNAC	5 cut(s)	927, 996, 1092, 1271, 1492
HpyAV	CCTTC	7 cut(s)	178, 208, 457, 611, 1112, 1386, 1508
HpyCH4III	ACNGT	6 cut(s)	173, 728, 1207, 1249, 1268, 1551
HpyCH4IV	ACGT	2 cut(s)	887, 1494
HpyCH4V	TGCA	8 cut(s)	166, 343, 807, 841, 873, 881, 962, 1477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1196
HpyF3I	CTNAG	4 cut(s)	609, 631, 916, 1352
HpySE526I	ACGT	2 cut(s)	887, 1494
Hsp92II	CATG	6 cut(s)	113, 343, 452, 664, 776, 1026
HspAI	GCGC	2 cut(s)	142, 1099
Kpn2I	TCCGGA	1 cut(s)	1081
KpnI	GGTACC	1 cut(s)	57
Lsp1109I	GCAGC	1 cut(s)	1469
LweI	GCATC	5 cut(s)	1284, 1464, 1557, 1584, 1611
MaeI	CTAG	2 cut(s)	617, 903
MaeII	ACGT	2 cut(s)	887, 1494
MaeIII	GTNAC	4 cut(s)	1052, 1249, 1365, 1464
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	2 cut(s)	394, 801
MhlI	GDGCHC	1 cut(s)	1201
MlyI	GAGTC	6 cut(s)	272, 607, 1301, 1497, 1576, 1603
MmeI	TCCRAC	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	1081
MroXI	GAANNNNTTC	4 cut(s)	505, 710, 1122, 1237
MseI	TTAA	8 cut(s)	192, 249, 258, 651, 716, 722, 1263, 1392
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	1 cut(s)	1158
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	1158
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	1196
NlaIII	CATG	6 cut(s)	113, 343, 452, 664, 776, 1026
NlaIV	GGNNCC	2 cut(s)	19, 55
NmuCI	GTSAC	4 cut(s)	1052, 1249, 1365, 1464
NsiI	ATGCAT	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	1398
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	579
PdmI	GAANNNNTTC	4 cut(s)	505, 710, 1122, 1237
PfeI	GAWTC	3 cut(s)	353, 1078, 1543
PfoI	TCCNGGA	1 cut(s)	1156
PkrI	GCNGC	1 cut(s)	1484
PleI	GAGTC	6 cut(s)	271, 607, 1301, 1496, 1576, 1603
PpsI	GAGTC	6 cut(s)	271, 607, 1301, 1496, 1576, 1603
PsiI	TTATAA	2 cut(s)	743, 1412
Psp1406I	AACGTT	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	1156
PspEI	GGTNACC	2 cut(s)	1365, 1464
PspGI	CCWGG	1 cut(s)	1156
PspN4I	GGNNCC	2 cut(s)	19, 55
PspPI	GGNCC	2 cut(s)	18, 1058
PsuI	RGATCY	2 cut(s)	394, 801
RsaI	GTAC	4 cut(s)	55, 243, 408, 678
RsaNI	GTAC	4 cut(s)	54, 242, 407, 677
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	8 cut(s)	192, 249, 258, 651, 716, 722, 1263, 1392
SatI	GCNGC	1 cut(s)	1483
Sau96I	GGNCC	2 cut(s)	18, 1058
SchI	GAGTC	6 cut(s)	272, 607, 1301, 1497, 1576, 1603
ScrFI	CCNGG	1 cut(s)	1158
SduI	GDGCHC	1 cut(s)	1201
SfaNI	GCATC	5 cut(s)	1284, 1464, 1557, 1584, 1611
SfcI	CTRYAG	2 cut(s)	590, 830
SfuI	TTCGAA	1 cut(s)	1398
SmiMI	CAYNNNNRTG	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	1485
SspMI	CTAG	2 cut(s)	617, 903
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	1156
TaaI	ACNGT	6 cut(s)	173, 728, 1207, 1249, 1268, 1551
TaiI	ACGT	2 cut(s)	890, 1497
TaqI	TCGA	9 cut(s)	356, 858, 1110, 1215, 1332, 1398, 1455, 1565, 1632
TfiI	GAWTC	3 cut(s)	353, 1078, 1543
Tru1I	TTAA	8 cut(s)	192, 249, 258, 651, 716, 722, 1263, 1392
Tru9I	TTAA	8 cut(s)	192, 249, 258, 651, 716, 722, 1263, 1392
TseFI	GTSAC	4 cut(s)	1052, 1249, 1365, 1464
TseI	GCWGC	1 cut(s)	1482
Tsp45I	GTSAC	4 cut(s)	1052, 1249, 1365, 1464
TspDTI	ATGAA	4 cut(s)	190, 366, 992, 1527
TspGWI	ACGGA	2 cut(s)	1300, 1369
XagI	CCTNNNNNAGG	1 cut(s)	988
XapI	RAATTY	5 cut(s)	270, 735, 1070, 1139, 1162
XbaI	TCTAGA	1 cut(s)	902
XmnI	GAANNNNTTC	4 cut(s)	505, 710, 1122, 1237
XspI	CTAG	2 cut(s)	617, 903
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.