Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

87251033 .. 87251572

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG549100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGGACTTCAAGGATGTGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTGGCTTTCTGTGCTCAAACTGTTGATCTCGATCACCCAAAACTGGGATCATGTTTCGGAATAGTCACAATCTACATTAACGGTGTATGCATCACTAAAGCATTGCTAATCATGATGAGACTGTCCGTGTGGGGATACTTGCCATTCGATACTATAATAGAACGGCTGTGTAAGAGTGGGTCACCACCACCTTCCGTGTGTCTGGTTAAGTTCGAAATTGAAACCCGTGTATGGTCTAACGAGATTACGGACCATTGTAGTGAGGTCGAGAGTGGGTCACCCCCGATGCAAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCATTTTCCATAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGATTGACTCCTACTACGATGCTGAAGATCGACTAACTGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

179

Amino Acids

20.25

Weight (kDa)

4.32

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	23, 46
AcuI	CTGAAG	4 cut(s)	470, 483, 510, 537
AfiI	CCNNNNNNNGG	3 cut(s)	112, 113, 300
AgsI	TTSAA	3 cut(s)	14, 52, 290
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	363, 448
AluI	AGCT	2 cut(s)	363, 448
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	181, 461
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	2 cut(s)	23, 46
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	95, 243, 339
AsuII	TTCGAA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	181, 461
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	5 cut(s)	168, 345, 448, 475, 502
BmuI	ACTGGG	1 cut(s)	122
BplI	GAGNNNNNCTC	4 cut(s)	458, 490, 485, 517
Bpu14I	TTCGAA	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 113, 300
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	456
BseGI	GGATG	2 cut(s)	23, 397
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	112, 113, 300
BseMI	GCAATG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	350
BshFI	GGCC	1 cut(s)	399
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	112, 113, 300
BsmAI	GTCTC	2 cut(s)	181, 461
BsnI	GGCC	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	5 cut(s)	94, 100, 116, 453, 520
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	399
BspDI	ATCGAT	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	94, 100, 116, 453, 520
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	91, 152, 192
Bst6I	CTCTTC	2 cut(s)	459, 486
BstBI	TTCGAA	1 cut(s)	282
BstEII	GGTNACC	2 cut(s)	249, 345
BstF5I	GGATG	2 cut(s)	23, 397
BstKTI	GATC	5 cut(s)	97, 103, 119, 456, 523
BstMAI	GTCTC	2 cut(s)	181, 461
BstMBI	GATC	5 cut(s)	94, 100, 116, 453, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	2 cut(s)	249, 345
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	350
Bsu15I	ATCGAT	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	399
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	23, 397
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	456
CviAII	CATG	2 cut(s)	120, 181
CviJI	RGCY	5 cut(s)	74, 235, 363, 399, 448
CviKI_1	RGCY	5 cut(s)	74, 235, 363, 399, 448
DpnI	GATC	5 cut(s)	96, 102, 118, 455, 522
DpnII	GATC	5 cut(s)	94, 100, 116, 453, 520
Eam1104I	CTCTTC	2 cut(s)	459, 486
EarI	CTCTTC	2 cut(s)	459, 486
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	4 cut(s)	470, 483, 510, 537
Eco91I	GGTNACC	2 cut(s)	249, 345
EcoO65I	GGTNACC	2 cut(s)	249, 345
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	161
FaeI	CATG	2 cut(s)	123, 184
FaiI	YATR	7 cut(s)	121, 157, 182, 224, 301, 440, 538
FatI	CATG	2 cut(s)	119, 180
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	2 cut(s)	30, 404
Fsp4HI	GCNGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	123, 184
HinfI	GANTC	4 cut(s)	369, 424, 473, 500
HphI	GGTGA	3 cut(s)	95, 243, 339
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	98, 181, 337
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	270, 389
HpyCH4III	ACNGT	3 cut(s)	91, 152, 192
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	159, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	123, 184
Kzo9I	GATC	5 cut(s)	94, 100, 116, 453, 520
LpnPI	CCDG	5 cut(s)	27, 54, 98, 257, 399
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	5 cut(s)	168, 345, 448, 475, 502
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	133, 249, 345
MalI	GATC	5 cut(s)	96, 102, 118, 455, 522
MboI	GATC	5 cut(s)	94, 100, 116, 453, 520
MboII	GAAGA	4 cut(s)	463, 476, 503, 530
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	5 cut(s)	23, 30, 46, 285, 401
MlyI	GAGTC	3 cut(s)	378, 467, 494
MnlI	CCTC	3 cut(s)	52, 325, 382
Mph1103I	ATGCAT	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	147, 276
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	5 cut(s)	94, 100, 116, 453, 520
NlaIII	CATG	2 cut(s)	123, 184
NmuCI	GTSAC	3 cut(s)	133, 249, 345
NsiI	ATGCAT	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	282
PagI	TCATGA	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	424
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	377, 467, 494
PpsI	GAGTC	3 cut(s)	377, 467, 494
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	2 cut(s)	249, 345
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	147, 276
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	5 cut(s)	94, 100, 116, 453, 520
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	3 cut(s)	378, 467, 494
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	5 cut(s)	262, 336, 365, 378, 450
SfaNI	GCATC	5 cut(s)	168, 345, 448, 475, 502
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	23, 30, 46, 285, 401
SsiI	CCGC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	91, 152, 192
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	6 cut(s)	99, 216, 282, 336, 456, 523
TasI	AATT	5 cut(s)	23, 30, 46, 285, 401
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	147, 276
Tru9I	TTAA	2 cut(s)	147, 276
TseFI	GTSAC	3 cut(s)	133, 249, 345
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	3 cut(s)	133, 249, 345
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	3 cut(s)	184, 253, 332
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	2 cut(s)	23, 46
XmnI	GAANNNNTTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.