Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

87121747 .. 87122277

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG548600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGGACTTCAAGGATGTGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTGGCTTTCTGTGCTCAAACTGTTGATCTCGATCTCCGGCCCTGGGCTATGAGATTATGTCTCAGAATAGTCACAATCTATATTAACGGTGTACCCATCATTAGAACATGCCTAATCATGATGAGAACGTCCTTGTGGGGATACTTGCCATTCGATACTATAATAGAACGGCTGAGTGAGAGTGGGTCACCACCACCTTCCGTGTGTCTGGTTAAGTTCGAAATTGAATTTAAAACCCGCGTTGTATGGTCTAACAAGATTACGGACGAAGGGCCCCCGATACAAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCGTTTTCCATAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGATTGACTCCTACTACGATGCTGAAGATCGACTAACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

176

Amino Acids

20.26

Weight (kDa)

4.45

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AciI	CCGC	2 cut(s)	307, 360
AcsI	RAATTY	3 cut(s)	23, 46, 296
AcuI	CTGAAG	4 cut(s)	464, 477, 504, 531
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	14, 52, 296
AjnI	CCWGG	2 cut(s)	40, 110
AluBI	AGCT	2 cut(s)	357, 442
AluI	AGCT	2 cut(s)	357, 442
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	134, 455
AoxI	GGCC	3 cut(s)	107, 341, 391
ApaI	GGGCCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	3 cut(s)	23, 46, 296
ArsI	GACNNNNNNTTYG	1 cut(s)	510
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	108, 341, 342
AsuHPI	GGTGA	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	42, 112
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	134, 455
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	42, 112
BmgT120I	GGNCC	3 cut(s)	108, 341, 342
BmiI	GGNNCC	2 cut(s)	343, 344
BmrFI	CCNGG	2 cut(s)	42, 112
BmsI	GCATC	3 cut(s)	442, 469, 496
BplI	GAGNNNNNCTC	4 cut(s)	452, 484, 479, 511
Bpu14I	TTCGAA	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	110, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	42, 112
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	110, 111
BseGI	GGATG	2 cut(s)	23, 391
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	145, 233
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	109, 343, 393
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	134, 455
BsnI	GGCC	3 cut(s)	109, 343, 393
Bsp119I	TTCGAA	1 cut(s)	288
Bsp120I	GGGCCC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	85, 345
Bsp143I	GATC	4 cut(s)	94, 100, 447, 514
BspACI	CCGC	2 cut(s)	307, 360
BspANI	GGCC	3 cut(s)	109, 343, 393
BspCNI	CTCAG	2 cut(s)	144, 234
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	343, 344
BspT104I	TTCGAA	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	110, 111
BssMI	GATC	4 cut(s)	94, 100, 447, 514
Bst2UI	CCWGG	2 cut(s)	42, 112
Bst4CI	ACNGT	4 cut(s)	91, 158, 426, 526
Bst6I	CTCTTC	2 cut(s)	453, 480
BstBI	TTCGAA	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	131, 242
BstEII	GGTNACC	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	23, 391
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	97, 103, 450, 517
BstMAI	GTCTC	2 cut(s)	134, 455
BstMBI	GATC	4 cut(s)	94, 100, 447, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	42, 112
BstNSI	RCATGY	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	40, 110
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	344
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	109, 343, 393
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	23, 391
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	108, 341, 342
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	177, 187
CviJI	RGCY	8 cut(s)	74, 109, 116, 241, 343, 357, 393, 442
CviKI_1	RGCY	8 cut(s)	74, 109, 116, 241, 343, 357, 393, 442
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	131, 242
DpnI	GATC	4 cut(s)	96, 102, 449, 516
DpnII	GATC	4 cut(s)	94, 100, 447, 514
DraI	TTTAAA	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	453, 480
EarI	CTCTTC	2 cut(s)	453, 480
Eco24I	GRGCYC	1 cut(s)	345
Eco57I	CTGAAG	4 cut(s)	464, 477, 504, 531
Eco91I	GGTNACC	1 cut(s)	255
EcoO109I	RGGNCCY	2 cut(s)	341, 342
EcoO65I	GGTNACC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	40, 110
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	2 cut(s)	180, 190
FaiI	YATR	8 cut(s)	119, 127, 150, 178, 188, 230, 316, 434
FatI	CATG	2 cut(s)	176, 186
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	2 cut(s)	30, 398
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	358
HaeIII	GGCC	3 cut(s)	109, 343, 393
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	2 cut(s)	180, 190
HinfI	GANTC	4 cut(s)	363, 418, 467, 494
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	161, 367
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	98, 187
Hpy8I	GTNNAC	2 cut(s)	161, 367
HpyAV	CCTTC	3 cut(s)	276, 332, 383
HpyCH4III	ACNGT	4 cut(s)	91, 158, 426, 526
HpyCH4IV	ACGT	2 cut(s)	197, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	131, 242
HpySE526I	ACGT	2 cut(s)	197, 369
Hsp92II	CATG	2 cut(s)	180, 190
Kzo9I	GATC	4 cut(s)	94, 100, 447, 514
LpnPI	CCDG	7 cut(s)	27, 54, 97, 119, 124, 263, 393
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	442, 469, 496
MaeII	ACGT	2 cut(s)	197, 369
MaeIII	GTNAC	2 cut(s)	139, 255
MalI	GATC	4 cut(s)	96, 102, 449, 516
MboI	GATC	4 cut(s)	94, 100, 447, 514
MboII	GAAGA	4 cut(s)	457, 470, 497, 524
MhlI	GDGCHC	2 cut(s)	85, 345
MluCI	AATT	6 cut(s)	23, 30, 46, 291, 296, 395
MlyI	GAGTC	3 cut(s)	372, 461, 488
MnlI	CCTC	2 cut(s)	52, 376
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	153, 282, 300
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	42, 112
MvaI	CCWGG	2 cut(s)	42, 112
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	94, 100, 447, 514
NlaIII	CATG	2 cut(s)	180, 190
NlaIV	GGNNCC	2 cut(s)	343, 344
NmuCI	GTSAC	2 cut(s)	139, 255
NspI	RCATGY	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	186
PasI	CCCWGGG	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	359
PleI	GAGTC	3 cut(s)	371, 461, 488
PpsI	GAGTC	3 cut(s)	371, 461, 488
Psp6I	CCWGG	2 cut(s)	40, 110
PspEI	GGTNACC	1 cut(s)	255
PspGI	CCWGG	2 cut(s)	40, 110
PspN4I	GGNNCC	2 cut(s)	343, 344
PspOMI	GGGCCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	108, 341, 342
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	153, 282, 300
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	4 cut(s)	94, 100, 447, 514
Sau96I	GGNCC	3 cut(s)	108, 341, 342
SchI	GAGTC	3 cut(s)	372, 461, 488
ScrFI	CCNGG	2 cut(s)	42, 112
SduI	GDGCHC	2 cut(s)	85, 345
SetI	ASST	5 cut(s)	200, 268, 359, 372, 444
SfaNI	GCATC	3 cut(s)	442, 469, 496
SfuI	TTCGAA	1 cut(s)	288
Sse9I	AATT	6 cut(s)	23, 30, 46, 291, 296, 395
SsiI	CCGC	2 cut(s)	307, 360
StyD4I	CCNGG	2 cut(s)	40, 110
TaaI	ACNGT	4 cut(s)	91, 158, 426, 526
TaiI	ACGT	2 cut(s)	200, 372
TaqI	TCGA	5 cut(s)	99, 222, 288, 450, 517
TasI	AATT	6 cut(s)	23, 30, 46, 291, 296, 395
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	3 cut(s)	153, 282, 300
Tru9I	TTAA	3 cut(s)	153, 282, 300
TseFI	GTSAC	2 cut(s)	139, 255
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	2 cut(s)	139, 255
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	2 cut(s)	259, 347
XapI	RAATTY	3 cut(s)	23, 46, 296
XceI	RCATGY	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.