Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007121.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

106857 .. 108154

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007121.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atgaaatccttgaaaaggttggatctaagccgtactgcaatcagagaattgccttcatcaacaattagatgtctcattaatctggaagagttaactttatcatactgccataaacttaaacatgtgccgtgcagcatttttgagttgcaacatctagagcttttggatctctcttattgtaaaaagctggtaacatttccaacaaagtcagggttttcaacgggatcgaccagtttacaggacaagcactatgttccattattcgtcaatttgaacaattgcaatcgtctcgtagaaattgcagaaattccgcgagaaagatatgacctagatgcgagtggctgctatggattgcaaaaaatttcaaaattgtcaaacattttggaaggtaaacagtcaaaattgaccccttttatggacttgcttaagtggtatgaactgtccggcaatctggctcgtgacgtggcaaaggtgaaaaagaatttaccggataattcctggtcaacagctctgtggtttctcgttttctcatgtcggcaatctgagtttcaggttttctttaacggcccgccttacaaatttgggattccggagtggttcacttggcgcagggatttcgatatggaaggacttcaaatggaaggacttcaaatggaaggatgtgaatttagaattgattttcctggaaatttcaaatgggaggacaaaggattggcgttctgtgctcaaactgttgataacgatcaccagcgctgggctatgagatcatgtttcagaatagtcacaatctacgttaacgctgtatgcatcactgaagtatacctaatgacgggatggtccgtgtggggatacttgccattcgatactattatagaacggttgagtgagagtgggtcaccaccaccttccgtgtgtctggttaagattgaatttaaaacccgcgatgtatggtctaacgagattaaggacgaagggcccccgatgcaaagctgcggagtccacgttgtaatgccagaggatgaaggccaatttgttttgagcttaccgaccccttcagtcaaacaaggcaagccatacctccaccacatatggagtaatgtttatcctgtggacgaatttcgccacatttatgaagaacgactgccatctaacgctgtgaaaacagagcagatgtggaatgctatccacatggacatcatggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

401

Amino Acids

46.52

Weight (kDa)

5.99

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	819
AccII	CGCG	2 cut(s)	313, 942
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	4 cut(s)	311, 569, 940, 993
AclWI	GGATC	3 cut(s)	30, 174, 232
AcsI	RAATTY	8 cut(s)	306, 360, 481, 578, 665, 688, 929, 1115
AcuI	CTGAAG	2 cut(s)	834, 1038
AfaI	GTAC	1 cut(s)	34
AfeI	AGCGCT	1 cut(s)	752
AfiI	CCNNNNNNNGG	4 cut(s)	15, 415, 754, 829
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	8 cut(s)	13, 219, 274, 366, 635, 650, 694, 929
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	497, 682
AluBI	AGCT	5 cut(s)	160, 187, 509, 990, 1041
AluI	AGCT	5 cut(s)	160, 187, 509, 990, 1041
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	2 cut(s)	77, 293
AlwI	GGATC	3 cut(s)	30, 174, 232
Aor13HI	TCCGGA	1 cut(s)	589
Aor51HI	AGCGCT	1 cut(s)	752
AoxI	GGCC	3 cut(s)	565, 974, 1024
ApaI	GGGCCC	1 cut(s)	978
ApeKI	GCWGC	3 cut(s)	132, 342, 990
ApoI	RAATTY	8 cut(s)	306, 360, 481, 578, 665, 688, 929, 1115
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	2 cut(s)	630, 645
AspLEI	GCGC	2 cut(s)	609, 753
AspS9I	GGNCC	4 cut(s)	566, 837, 974, 975
AsuHPI	GGTGA	3 cut(s)	484, 737, 888
AvaII	GGWCC	1 cut(s)	837
BaeGI	GKGCMC	1 cut(s)	978
BanII	GRGCYC	1 cut(s)	978
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	144, 329, 977
BccI	CCATC	2 cut(s)	828, 1153
BceAI	ACGGC	3 cut(s)	15, 112, 580
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 598, 632
BciT130I	CCWGG	2 cut(s)	499, 684
BciVI	GTATCC	1 cut(s)	842
BcoDI	GTCTC	2 cut(s)	77, 293
BfaI	CTAG	2 cut(s)	155, 329
BfoI	RGCGCY	1 cut(s)	754
BfrI	CTTAAG	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	842
BisI	GCNGC	3 cut(s)	133, 343, 991
BlsI	GCNGC	3 cut(s)	134, 344, 992
Bme1390I	CCNGG	2 cut(s)	499, 684
Bme18I	GGWCC	1 cut(s)	837
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	4 cut(s)	566, 837, 974, 975
BmiI	GGNNCC	2 cut(s)	976, 977
BmrFI	CCNGG	2 cut(s)	499, 684
BmsI	GCATC	3 cut(s)	322, 816, 972
BsaBI	GATNNNNATC	1 cut(s)	741
BsaWI	WCCGGW	2 cut(s)	487, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 415, 754, 829
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	741
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	499, 684
BseGI	GGATG	3 cut(s)	665, 839, 1024
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	4 cut(s)	15, 415, 754, 829
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	978
BseXI	GCAGC	3 cut(s)	144, 329, 977
BseYI	CCCAGC	1 cut(s)	753
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	313, 942
BshFI	GGCC	3 cut(s)	567, 976, 1026
BsiHKAI	GWGCWC	1 cut(s)	727
BsiSI	CCGG	3 cut(s)	444, 488, 590
BslI	CCNNNNNNNGG	4 cut(s)	15, 415, 754, 829
BsmAI	GTCTC	2 cut(s)	77, 293
BsmBI	CGTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	1183
BsnI	GGCC	3 cut(s)	567, 976, 1026
Bsp120I	GGGCCC	1 cut(s)	974
Bsp1286I	GDGCHC	2 cut(s)	727, 978
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	5 cut(s)	22, 166, 224, 742, 764
BspACI	CCGC	4 cut(s)	311, 569, 940, 993
BspANI	GGCC	3 cut(s)	567, 976, 1026
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	2 cut(s)	313, 942
BspLI	GGNNCC	2 cut(s)	976, 977
BspPI	GGATC	3 cut(s)	30, 174, 232
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	22, 166, 224, 742, 764
BssNAI	GTATAC	1 cut(s)	820
BssSI	CACGAG	1 cut(s)	456
Bst1107I	GTATAC	1 cut(s)	820
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	499, 684
Bst4CI	ACNGT	4 cut(s)	396, 441, 733, 879
Bst6I	CTCTTC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	569, 1070
BstDEI	CTNAG	2 cut(s)	26, 543
BstEII	GGTNACC	1 cut(s)	894
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	665, 839, 1024
BstFNI	CGCG	2 cut(s)	313, 942
BstH2I	RGCGCY	1 cut(s)	754
BstHHI	GCGC	2 cut(s)	609, 753
BstKTI	GATC	5 cut(s)	25, 169, 227, 745, 767
BstMAI	GTCTC	2 cut(s)	77, 293
BstMBI	GATC	5 cut(s)	22, 166, 224, 742, 764
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 982
BstNI	CCWGG	2 cut(s)	499, 684
BstNSI	RCATGY	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	894
BstSCI	CCNGG	2 cut(s)	497, 682
BstSLI	GKGCMC	1 cut(s)	978
BstUI	CGCG	2 cut(s)	313, 942
BstV1I	GCAGC	3 cut(s)	144, 329, 977
BstX2I	RGATCY	2 cut(s)	22, 166
BstYI	RGATCY	2 cut(s)	22, 166
BstZ17I	GTATAC	1 cut(s)	820
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	567, 976, 1026
BtgZI	GCGATG	1 cut(s)	957
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	665, 839, 1024
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	569, 1070
CfoI	GCGC	2 cut(s)	609, 753
Cfr13I	GGNCC	4 cut(s)	566, 837, 974, 975
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	5 cut(s)	122, 531, 768, 1189, 1198
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	26, 543
DpnI	GATC	5 cut(s)	24, 168, 226, 744, 766
DpnII	GATC	5 cut(s)	22, 166, 224, 742, 764
DraI	TTTAAA	1 cut(s)	934
DrdI	GACNNNNNNGTC	1 cut(s)	835
DseDI	GACNNNNNNGTC	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	978
Eco47I	GGWCC	1 cut(s)	837
Eco47III	AGCGCT	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	834, 1038
Eco91I	GGTNACC	1 cut(s)	894
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	2 cut(s)	974, 975
EcoO65I	GGTNACC	1 cut(s)	894
EcoRII	CCWGG	2 cut(s)	497, 682
EcoT22I	ATGCAT	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	978
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	5 cut(s)	125, 534, 771, 1192, 1201
FatI	CATG	5 cut(s)	121, 530, 767, 1188, 1197
FauI	CCCGC	2 cut(s)	576, 947
FauNDI	CATATG	1 cut(s)	1088
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	3 cut(s)	133, 343, 991
FokI	GGATG	3 cut(s)	672, 846, 1031
FriOI	GRGCYC	1 cut(s)	978
Fsp4HI	GCNGC	3 cut(s)	133, 343, 991
FspBI	CTAG	2 cut(s)	155, 329
GlaI	GCGC	2 cut(s)	608, 752
GluI	GCNGC	3 cut(s)	133, 343, 991
GsaI	CCCAGC	1 cut(s)	757
HaeII	RGCGCY	1 cut(s)	754
HaeIII	GGCC	3 cut(s)	567, 976, 1026
HapII	CCGG	3 cut(s)	444, 488, 590
HhaI	GCGC	2 cut(s)	609, 753
Hin1II	CATG	5 cut(s)	125, 534, 771, 1192, 1201
Hin6I	GCGC	2 cut(s)	607, 751
HinP1I	GCGC	2 cut(s)	607, 751
HincII	GTYRAC	3 cut(s)	93, 504, 796
HindII	GTYRAC	3 cut(s)	93, 504, 796
HinfI	GANTC	2 cut(s)	586, 996
HpaI	GTTAAC	2 cut(s)	93, 796
HpaII	CCGG	3 cut(s)	444, 488, 590
HphI	GGTGA	3 cut(s)	484, 737, 888
Hpy166II	GTNNAC	9 cut(s)	93, 236, 392, 504, 600, 796, 820, 1000, 1111
Hpy188I	TCNGA	3 cut(s)	44, 544, 776
Hpy188III	TCNNGA	4 cut(s)	83, 155, 458, 590
Hpy8I	GTNNAC	9 cut(s)	93, 236, 392, 504, 600, 796, 820, 1000, 1111
HpyAV	CCTTC	9 cut(s)	63, 380, 620, 635, 650, 915, 965, 1016, 1062
HpyCH4III	ACNGT	4 cut(s)	396, 441, 733, 879
HpyCH4IV	ACGT	3 cut(s)	462, 792, 1002
HpyCH4V	TGCA	8 cut(s)	38, 132, 148, 282, 302, 355, 807, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 982
HpyF3I	CTNAG	2 cut(s)	26, 543
HpySE526I	ACGT	3 cut(s)	462, 792, 1002
Hsp92II	CATG	5 cut(s)	125, 534, 771, 1192, 1201
HspAI	GCGC	2 cut(s)	607, 751
Kpn2I	TCCGGA	1 cut(s)	589
KspAI	GTTAAC	2 cut(s)	93, 796
Kzo9I	GATC	5 cut(s)	22, 166, 224, 742, 764
Lsp1109I	GCAGC	3 cut(s)	144, 329, 977
LweI	GCATC	3 cut(s)	322, 816, 972
MaeI	CTAG	2 cut(s)	155, 329
MaeII	ACGT	3 cut(s)	462, 792, 1002
MaeIII	GTNAC	4 cut(s)	190, 458, 781, 894
MalI	GATC	5 cut(s)	24, 168, 226, 744, 766
MboI	GATC	5 cut(s)	22, 166, 224, 742, 764
MboII	GAAGA	2 cut(s)	98, 1145
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	2 cut(s)	22, 166
MhlI	GDGCHC	2 cut(s)	727, 978
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	3 cut(s)	694, 1009, 1088
Mph1103I	ATGCAT	1 cut(s)	809
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	2 cut(s)	630, 645
MseI	TTAA	9 cut(s)	78, 92, 117, 426, 561, 795, 921, 933, 963
MslI	CAYNNNNRTG	1 cut(s)	1128
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	3 cut(s)	444, 488, 590
MspR9I	CCNGG	2 cut(s)	499, 684
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	1183
MvaI	CCWGG	2 cut(s)	499, 684
MvnI	CGCG	2 cut(s)	313, 942
MwoI	GCNNNNNNNGC	2 cut(s)	722, 982
NdeI	CATATG	1 cut(s)	1088
NdeII	GATC	5 cut(s)	22, 166, 224, 742, 764
NlaIII	CATG	5 cut(s)	125, 534, 771, 1192, 1201
NlaIV	GGNNCC	2 cut(s)	976, 977
NmuCI	GTSAC	3 cut(s)	458, 781, 894
NsiI	ATGCAT	1 cut(s)	809
NspI	RCATGY	1 cut(s)	125
PciI	ACATGT	1 cut(s)	121
PctI	GAATGC	1 cut(s)	1183
PdmI	GAANNNNTTC	2 cut(s)	630, 645
PfeI	GAWTC	1 cut(s)	586
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	134, 344, 992
PleI	GAGTC	1 cut(s)	1004
PpsI	GAGTC	1 cut(s)	1004
PscI	ACATGT	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	497, 682
PspEI	GGTNACC	1 cut(s)	894
PspFI	CCCAGC	1 cut(s)	753
PspGI	CCWGG	2 cut(s)	497, 682
PspN4I	GGNNCC	2 cut(s)	976, 977
PspOMI	GGGCCC	1 cut(s)	974
PspPI	GGNCC	4 cut(s)	566, 837, 974, 975
PsuI	RGATCY	2 cut(s)	22, 166
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	1128
SaqAI	TTAA	9 cut(s)	78, 92, 117, 426, 561, 795, 921, 933, 963
SatI	GCNGC	3 cut(s)	133, 343, 991
Sau3AI	GATC	5 cut(s)	22, 166, 224, 742, 764
Sau96I	GGNCC	4 cut(s)	566, 837, 974, 975
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	2 cut(s)	499, 684
SduI	GDGCHC	2 cut(s)	727, 978
SfaNI	GCATC	3 cut(s)	322, 816, 972
SinI	GGWCC	1 cut(s)	837
SmiMI	CAYNNNNRTG	1 cut(s)	1128
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SsiI	CCGC	4 cut(s)	311, 569, 940, 993
SspMI	CTAG	2 cut(s)	155, 329
StyD4I	CCNGG	2 cut(s)	497, 682
TaaI	ACNGT	4 cut(s)	396, 441, 733, 879
TaiI	ACGT	3 cut(s)	465, 795, 1005
TaqI	TCGA	3 cut(s)	227, 618, 861
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	9 cut(s)	78, 92, 117, 426, 561, 795, 921, 933, 963
Tru9I	TTAA	9 cut(s)	78, 92, 117, 426, 561, 795, 921, 933, 963
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	3 cut(s)	458, 781, 894
TseI	GCWGC	3 cut(s)	132, 342, 990
Tsp45I	GTSAC	3 cut(s)	458, 781, 894
TspDTI	ATGAA	5 cut(s)	17, 45, 450, 1035, 1146
TspGWI	ACGGA	2 cut(s)	829, 898
TspRI	CASTG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	837
VspI	ATTAAT	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	8 cut(s)	306, 360, 481, 578, 665, 688, 929, 1115
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	819
XmnI	GAANNNNTTC	2 cut(s)	630, 645
XspI	CTAG	2 cut(s)	155, 329
Zsp2I	ATGCAT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.