Rh5CG571900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013763
Physical Location & Seq
Reverse (-)
80957877 .. 80958236
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG571900.1

Sequence Viewer

Length: 360 bp
ATGATGAGACTGTCCGTGTGGGGATACTTGCCATTCGATACTATAATAGAACGGCTGTGTAAGAGTGGGTCACCACCACCTTCCGTGTGTCTGGTTAAGTTCGAAATTGAAACCCGTGTATGGTCTAACGAGATTACGGACCATTGTAGTGAGGTCGAGAGTGGGTCACCCCCGATGCAAAGCTGCGGAGTCCACGTTGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCATTTTCCATAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGAGATTGACTCCTACTACGATGCTGAAGATCGACTAACTGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

119

Amino Acids

13.63

Weight (kDa)

4.18

Isoelectric Point (pI)

69.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AcuI CTGAAG 4 cut(s) 290, 303, 330, 357
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 2 cut(s) 183, 268
AluI AGCT 2 cut(s) 183, 268
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 63, 159
AsuII TTCGAA 1 cut(s) 102
AvaII GGWCC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmsI GCATC 4 cut(s) 165, 268, 295, 322
BplI GAGNNNNNCTC 4 cut(s) 278, 310, 305, 337
Bpu14I TTCGAA 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 276
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 219
BshVI ATCGAT 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 273, 340
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 276
BspT104I TTCGAA 1 cut(s) 102
BssMI GATC 2 cut(s) 273, 340
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 279, 306
BstBI TTCGAA 1 cut(s) 102
BstEII GGTNACC 2 cut(s) 69, 165
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 276, 343
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 273, 340
BstPI GGTNACC 2 cut(s) 69, 165
BstV1I GCAGC 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 276
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 219
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 276
CviJI RGCY 4 cut(s) 55, 183, 219, 268
CviKI_1 RGCY 4 cut(s) 55, 183, 219, 268
DpnI GATC 2 cut(s) 275, 342
DpnII GATC 2 cut(s) 273, 340
Eam1104I CTCTTC 2 cut(s) 279, 306
EarI CTCTTC 2 cut(s) 279, 306
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 4 cut(s) 290, 303, 330, 357
Eco91I GGTNACC 2 cut(s) 69, 165
EcoO65I GGTNACC 2 cut(s) 69, 165
FaiI YATR 4 cut(s) 44, 121, 260, 358
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 219
HinfI GANTC 4 cut(s) 189, 244, 293, 320
HphI GGTGA 2 cut(s) 63, 159
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 90, 209
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 195
Kzo9I GATC 2 cut(s) 273, 340
LpnPI CCDG 2 cut(s) 77, 219
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 4 cut(s) 165, 268, 295, 322
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 69, 165
MalI GATC 2 cut(s) 275, 342
MboI GATC 2 cut(s) 273, 340
MboII GAAGA 4 cut(s) 283, 296, 323, 350
MluCI AATT 2 cut(s) 105, 221
MlyI GAGTC 3 cut(s) 198, 287, 314
MnlI CCTC 2 cut(s) 145, 202
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 147
NdeII GATC 2 cut(s) 273, 340
NmuCI GTSAC 2 cut(s) 69, 165
NspV TTCGAA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 3 cut(s) 197, 287, 314
PpsI GAGTC 3 cut(s) 197, 287, 314
PspEI GGTNACC 2 cut(s) 69, 165
PspPI GGNCC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 273, 340
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 3 cut(s) 198, 287, 314
SetI ASST 5 cut(s) 82, 156, 185, 198, 270
SfaNI GCATC 4 cut(s) 165, 268, 295, 322
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 2 cut(s) 105, 221
SsiI CCGC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 1 cut(s) 198
TaqI TCGA 5 cut(s) 36, 102, 156, 276, 343
TasI AATT 2 cut(s) 105, 221
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 2 cut(s) 69, 165
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 2 cut(s) 69, 165
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 3 cut(s) 4, 73, 152
VpaK11BI GGWCC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.