Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007121.1

Orthogroup ID

OG0013763

Physical Location & Seq

Genomic Coordinates Reverse (-)

96592 .. 97371

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007121.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgttggaaggtaaagagtcaaaattgaccccttttctggctcttgacgtggcaaagctgaaaaagaatttacatgataagtccaggtcaacatctctgtttgctttcgttttcccatgtcggcaatctgagtgtctggttttatttgacggcctgacttacaaatttgggattccagagtggttcacttggcgcagggatttcgatatggaaggacttcaaggatgtgaatttagaattgattttcctgaaaatttcaaatgggaggacagaggattggctttctgtgctcaaactgttgatcacaatcaccagcgcagggctatgagttccagaacagtcacaatctacattaacggtgtacgcatcactcaagcatgcgttacgctgagacagtccgtgtggggatacttgccattcgatactattatagaacggctgagtgagagtgggtcaccaccaccttccgtgtgtctggttaagttcgaaattatatttgtaaccggcaatgtatggactaacgagattacgcacaaagggcccccgatgcaaagctgcggagtccacgttgtaatgccagaggatgaaggccgatttgtaaatgattgtcaaaggattccaccgttttccataagagagctgaagatctatgctgaagactcctactacgatgctgaagtgactgactccgactacgatgctgaagagactgactcctactacgatgctgaagagattgactcctactacgatgctgaagatcgactacctgttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

259

Amino Acids

29.96

Weight (kDa)

4.73

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013763)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0053971 RchiOBHm_Chr5g0080971
rosa_laevigata	RLG00000036881 RLG00000036899 RLG00000036901 RLG00000036903 RLG00000036905
rosa_multiflora	Rmu_sc0003177.1_g000025 Rmu_sc0003177.1_g000033 Rmu_sc0007121.1_g000004 Rmu_sc0007121.1_g000021 Rmu_sc0007121.1_g000025 Rmu_sc0007121.1_g000029
rosa_samantha	Rh5BG548200 Rh5BG548600 Rh5BG548800 Rh5BG549100 Rh5CG571900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	558
AcsI	RAATTY	4 cut(s)	67, 164, 230, 253
AcuI	CTGAAG	6 cut(s)	662, 675, 696, 723, 750, 777
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	37, 319
AgsI	TTSAA	2 cut(s)	221, 259
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	58, 555, 640
AluI	AGCT	3 cut(s)	58, 555, 640
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	385, 701
AoxI	GGCC	3 cut(s)	151, 539, 589
ApaI	GGGCCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	4 cut(s)	67, 164, 230, 253
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	195, 318
AspS9I	GGNCC	2 cut(s)	539, 540
AsuHPI	GGTGA	2 cut(s)	302, 447
AsuII	TTCGAA	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	543
BarI	GAAGNNNNNNTAC	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	542
BceAI	ACGGC	2 cut(s)	166, 452
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 680, 714
BciT130I	CCWGG	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	401
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	385, 701
BfuI	GTATCC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	539, 540
BmiI	GGNNCC	2 cut(s)	541, 542
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	6 cut(s)	375, 537, 661, 688, 715, 742
BpiI	GAAGAC	1 cut(s)	663
BplI	GAGNNNNNCTC	4 cut(s)	698, 730, 725, 757
Bpu14I	TTCGAA	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 319
Bse118I	RCCGGY	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	230, 589
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	37, 319
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	120, 380, 431
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	3 cut(s)	153, 541, 591
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	37, 319
BsmAI	GTCTC	2 cut(s)	385, 701
BsnI	GGCC	3 cut(s)	153, 541, 591
Bsp119I	TTCGAA	1 cut(s)	486
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	292, 543
Bsp143I	GATC	3 cut(s)	301, 645, 760
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	3 cut(s)	153, 541, 591
BspCNI	CTCAG	3 cut(s)	121, 381, 432
BspLI	GGNNCC	2 cut(s)	541, 542
BspT104I	TTCGAA	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	503
BssMI	GATC	3 cut(s)	301, 645, 760
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	5 cut(s)	298, 340, 359, 396, 624
Bst6I	CTCTTC	2 cut(s)	699, 726
BstBI	TTCGAA	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	129, 389, 440
BstEII	GGTNACC	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	230, 589
BstHHI	GCGC	2 cut(s)	195, 318
BstKTI	GATC	3 cut(s)	304, 648, 763
BstMAI	GTCTC	2 cut(s)	385, 701
BstMBI	GATC	3 cut(s)	301, 645, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 538, 547
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	153, 541, 591
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	230, 589
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	2 cut(s)	195, 318
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	539, 540
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	3 cut(s)	74, 117, 378
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	3 cut(s)	129, 389, 440
DpnI	GATC	3 cut(s)	303, 647, 762
DpnII	GATC	3 cut(s)	301, 645, 760
Eam1104I	CTCTTC	2 cut(s)	699, 726
EarI	CTCTTC	2 cut(s)	699, 726
Eco24I	GRGCYC	1 cut(s)	543
Eco57I	CTGAAG	6 cut(s)	662, 675, 696, 723, 750, 777
Eco91I	GGTNACC	1 cut(s)	453
EcoO109I	RGGNCCY	2 cut(s)	539, 540
EcoO65I	GGTNACC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	3 cut(s)	77, 120, 381
FatI	CATG	3 cut(s)	73, 116, 377
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	556
FokI	GGATG	2 cut(s)	237, 596
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	556
GlaI	GCGC	2 cut(s)	194, 317
GluI	GCNGC	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	153, 541, 591
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	2 cut(s)	195, 318
Hin1II	CATG	3 cut(s)	77, 120, 381
Hin6I	GCGC	2 cut(s)	193, 316
HinP1I	GCGC	2 cut(s)	193, 316
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	8 cut(s)	17, 172, 561, 616, 659, 686, 713, 740
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	302, 447
Hpy166II	GTNNAC	4 cut(s)	90, 186, 362, 565
Hpy188I	TCNGA	2 cut(s)	130, 691
Hpy188III	TCNNGA	4 cut(s)	44, 176, 248, 333
Hpy8I	GTNNAC	4 cut(s)	90, 186, 362, 565
HpyAV	CCTTC	3 cut(s)	206, 474, 581
HpyCH4III	ACNGT	5 cut(s)	298, 340, 359, 396, 624
HpyCH4IV	ACGT	2 cut(s)	48, 567
HpyCH4V	TGCA	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 538, 547
HpyF3I	CTNAG	3 cut(s)	129, 389, 440
HpySE526I	ACGT	2 cut(s)	48, 567
Hsp92II	CATG	3 cut(s)	77, 120, 381
HspAI	GCGC	2 cut(s)	193, 316
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 645, 760
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	6 cut(s)	375, 537, 661, 688, 715, 742
MaeII	ACGT	2 cut(s)	48, 567
MaeIII	GTNAC	5 cut(s)	340, 382, 453, 499, 679
MalI	GATC	3 cut(s)	303, 647, 762
MboI	GATC	3 cut(s)	301, 645, 760
MboII	GAAGA	5 cut(s)	655, 668, 716, 743, 770
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	2 cut(s)	292, 543
MluCI	AATT	7 cut(s)	23, 67, 164, 230, 237, 253, 489
MlyI	GAGTC	6 cut(s)	26, 570, 653, 680, 707, 734
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	3 cut(s)	259, 266, 574
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	354, 480
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	287, 538, 547
NdeII	GATC	3 cut(s)	301, 645, 760
NlaIII	CATG	3 cut(s)	77, 120, 381
NlaIV	GGNNCC	2 cut(s)	541, 542
NmuCI	GTSAC	3 cut(s)	340, 453, 679
NspI	RCATGY	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	486
PaeI	GCATGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	172, 616
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	6 cut(s)	25, 569, 653, 680, 707, 734
PpsI	GAGTC	6 cut(s)	25, 569, 653, 680, 707, 734
Psp6I	CCWGG	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	541, 542
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	539, 540
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	354, 480
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	3 cut(s)	301, 645, 760
Sau96I	GGNCC	2 cut(s)	539, 540
SchI	GAGTC	6 cut(s)	26, 570, 653, 680, 707, 734
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	292, 543
SetI	ASST	9 cut(s)	13, 51, 60, 89, 466, 557, 570, 642, 772
SfaNI	GCATC	6 cut(s)	375, 537, 661, 688, 715, 742
SfuI	TTCGAA	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	7 cut(s)	23, 67, 164, 230, 237, 253, 489
SsiI	CCGC	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	5 cut(s)	298, 340, 359, 396, 624
TaiI	ACGT	2 cut(s)	51, 570
TaqI	TCGA	4 cut(s)	204, 420, 486, 763
TasI	AATT	7 cut(s)	23, 67, 164, 230, 237, 253, 489
TfiI	GAWTC	2 cut(s)	172, 616
Tru1I	TTAA	2 cut(s)	354, 480
Tru9I	TTAA	2 cut(s)	354, 480
TseFI	GTSAC	3 cut(s)	340, 453, 679
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	3 cut(s)	340, 453, 679
TspDTI	ATGAA	1 cut(s)	600
TspGWI	ACGGA	2 cut(s)	388, 457
XapI	RAATTY	4 cut(s)	67, 164, 230, 253
XceI	RCATGY	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.