Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8224482.1

Orthogroup ID

OG0001206

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 746

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8224482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

gatgtcttgaaggaaggtggtgttcttcctggtatcaaggttgacaagggtgttgttgagcttaaaggcaccgacggtgagaccacaacccagggtttggatggccttggtgcccgctgcgctaagtactatgaagctggtgcccggtttgccaaatggcgtgctgtgctcaagattggtcccaatgagccatctcagctttcaatcaacgagaatgccaatggcttggctcgttatgctatcatctgccaggagaatggtttggtacccattgttgagcctgagatccttgttgacggaccccactccattgacaagtgtgctgatgtgactgagcgcgtccttgctgcatgttacaaggctctcaatgaccaccatgtccttcttgaaggaactctcttgaagcccaacatggtgactcccggatctgatgccaagaaggcttcaccagaagtgattgctgagtacaccgtccgtgccttgcagcgcactacccctgcagctgtccctgctgtggtgttcttgtctggtggacagagtgaggaggaggctactctcaaccttaacgccatgaacaagctcaagggaaagaagccatggactctttccttctccttcggccgtgctcttcaagccagcactctcaaggcttggtcaggaaagaaagaaaatgttaaggctgcacaggaggctctcctcacaagggccaaggccaactcagaggcaaccttgggaacctacaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Glycolytic

Protein Analysis

248

Amino Acids

26.45

Weight (kDa)

8.57

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36460 AT2G36460 AT2G36460 AT3G52930 AT5G03690 AT5G03690 AT5G03690 AT5G03690
fragaria_vesca	FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980
malus_domestica	MD11G1158300.v1.1 MD12G1018700.v1.1 MD12G1018800.v1.1 MD14G1016700.v1.1 MD14G1016800.v1.1 MD17G1158400.v1.1
prunus_persica	Prupe.7G116500_v2.0.a1 Prupe.7G116600_v2.0.a1
pyrus_communis	pycom11g12860 pycom12g01550 pycom12g01560 pycom14g01430 pycom14g01440
rosa_chinensis	RchiOBHm_Chr3g0472251 RchiOBHm_Chr3g0472261
rosa_laevigata	RLG00000024095 RLG00000024096
rosa_multiflora	Rmu_co8224482.1_g000001 Rmu_sc0008192.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409130 Rroxscaffold_6G00409140
rosa_rugosa	Rorug03G0123100 Rorug03G0123100 Rorug03G0123200 Rorug03G0123200 Rorug03G0123300
rosa_samantha	Rh3AG175500 Rh3AG175600 Rh3BG201000 Rh3BG201100 Rh3CG192200 Rh3CG192300 Rh3CG199400 Rh3CG199500 Rh3DG173900 Rh3DG174000
rosa_wichuraiana	Rw3G016560 Rw3G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	4 cut(s)	68, 110, 140, 265
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	2 cut(s)	280, 433
AcoI	YGGCCR	1 cut(s)	619
AfaI	GTAC	3 cut(s)	128, 267, 467
AfiI	CCNNNNNNNGG	3 cut(s)	97, 514, 703
AgsI	TTSAA	5 cut(s)	10, 204, 389, 403, 632
AjnI	CCWGG	3 cut(s)	28, 90, 249
AluBI	AGCT	5 cut(s)	61, 137, 199, 503, 580
AluI	AGCT	5 cut(s)	61, 137, 199, 503, 580
Alw21I	GWGCWC	2 cut(s)	171, 628
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	280, 433
AoxI	GGCC	4 cut(s)	103, 619, 705, 711
ApeKI	GCWGC	5 cut(s)	117, 347, 484, 500, 680
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	122, 339, 489
AspS9I	GGNCC	3 cut(s)	179, 299, 705
AsuC2I	CCSGG	2 cut(s)	145, 423
AsuHPI	GGTGA	3 cut(s)	89, 427, 438
AvaII	GGWCC	2 cut(s)	179, 299
BaeGI	GKGCMC	2 cut(s)	115, 145
BanI	GGYRCC	4 cut(s)	68, 110, 140, 265
Bbv12I	GWGCWC	2 cut(s)	171, 628
BbvI	GCAGC	5 cut(s)	104, 334, 496, 512, 667
BccI	CCATC	2 cut(s)	95, 199
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	3 cut(s)	30, 92, 251
BcnI	CCSGG	2 cut(s)	145, 423
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	498
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	5 cut(s)	118, 348, 485, 501, 681
BlsI	GCNGC	5 cut(s)	119, 349, 486, 502, 682
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	5 cut(s)	30, 92, 145, 251, 423
Bme18I	GGWCC	2 cut(s)	179, 299
BmgT120I	GGNCC	3 cut(s)	179, 299, 705
BmiI	GGNNCC	7 cut(s)	70, 112, 142, 181, 267, 301, 736
BmrFI	CCNGG	5 cut(s)	30, 92, 145, 251, 423
BmsI	GCATC	1 cut(s)	421
BpuEI	CTTGAG	3 cut(s)	155, 566, 629
BpuMI	CCSGG	2 cut(s)	145, 423
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	6 cut(s)	90, 91, 106, 596, 708, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 514, 703
BseBI	CCWGG	3 cut(s)	30, 92, 251
BseDI	CCNNGG	6 cut(s)	90, 91, 106, 596, 708, 729
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	97, 514, 703
BseMII	CTCAG	5 cut(s)	209, 273, 324, 453, 732
BseRI	GAGGAG	3 cut(s)	557, 560, 686
BseSI	GKGCMC	2 cut(s)	115, 145
BseX3I	CGGCCG	1 cut(s)	619
BseXI	GCAGC	5 cut(s)	104, 334, 496, 512, 667
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	4 cut(s)	105, 621, 707, 713
BshNI	GGYRCC	4 cut(s)	68, 110, 140, 265
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	171, 628
BsiSI	CCGG	2 cut(s)	145, 423
BslFI	GGGAC	2 cut(s)	165, 491
BslI	CCNNNNNNNGG	3 cut(s)	97, 514, 703
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	165, 491
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	105, 621, 707, 713
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	4 cut(s)	115, 145, 171, 628
Bsp143I	GATC	2 cut(s)	285, 425
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	4 cut(s)	105, 621, 707, 713
BspCNI	CTCAG	5 cut(s)	208, 274, 325, 454, 731
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	7 cut(s)	70, 112, 142, 181, 267, 301, 736
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	280, 433
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	4 cut(s)	68, 110, 140, 265
BspTNI	GGTCTC	1 cut(s)	74
BssECI	CCNNGG	6 cut(s)	90, 91, 106, 596, 708, 729
BssMI	GATC	2 cut(s)	285, 425
BssT1I	CCWWGG	4 cut(s)	106, 596, 708, 729
Bst2UI	CCWGG	3 cut(s)	30, 92, 251
Bst4CI	ACNGT	2 cut(s)	77, 472
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	115, 162, 637
BstDEI	CTNAG	6 cut(s)	123, 195, 282, 333, 462, 718
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	122, 339, 489
BstKTI	GATC	2 cut(s)	288, 428
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	285, 425
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	9 cut(s)	119, 149, 166, 196, 236, 440, 509, 632, 689
BstNI	CCWGG	3 cut(s)	30, 92, 251
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	5 cut(s)	28, 90, 143, 249, 421
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	2 cut(s)	115, 145
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	5 cut(s)	104, 334, 496, 512, 667
BstX2I	RGATCY	2 cut(s)	285, 425
BstXI	CCANNNNNNTGG	2 cut(s)	226, 257
BstYI	RGATCY	2 cut(s)	285, 425
BstZI	CGGCCG	1 cut(s)	619
BsuRI	GGCC	4 cut(s)	105, 621, 707, 713
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	115, 162, 637
CfoI	GCGC	3 cut(s)	122, 339, 489
Cfr13I	GGNCC	3 cut(s)	179, 299, 705
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	127, 266, 466
CviAII	CATG	5 cut(s)	351, 377, 412, 571, 597
CviQI	GTAC	3 cut(s)	127, 266, 466
DdeI	CTNAG	6 cut(s)	123, 195, 282, 333, 462, 718
DpnI	GATC	2 cut(s)	287, 427
DpnII	GATC	2 cut(s)	285, 425
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	619
EagI	CGGCCG	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EclXI	CGGCCG	1 cut(s)	619
Eco130I	CCWWGG	4 cut(s)	106, 596, 708, 729
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	179, 299
Eco52I	CGGCCG	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	28, 90, 249
EcoT14I	CCWWGG	4 cut(s)	106, 596, 708, 729
ErhI	CCWWGG	4 cut(s)	106, 596, 708, 729
FaeI	CATG	5 cut(s)	354, 380, 415, 574, 600
FaiI	YATR	7 cut(s)	132, 237, 352, 378, 413, 572, 598
FaqI	GGGAC	2 cut(s)	165, 491
FatI	CATG	5 cut(s)	350, 376, 411, 570, 596
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	118, 348, 485, 501, 681
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	5 cut(s)	118, 348, 485, 501, 681
GlaI	GCGC	3 cut(s)	121, 338, 488
GluI	GCNGC	5 cut(s)	118, 348, 485, 501, 681
HaeIII	GGCC	4 cut(s)	105, 621, 707, 713
HapII	CCGG	2 cut(s)	145, 423
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	3 cut(s)	122, 339, 489
Hin1II	CATG	5 cut(s)	354, 380, 415, 574, 600
Hin6I	GCGC	3 cut(s)	120, 337, 487
HinP1I	GCGC	3 cut(s)	120, 337, 487
HincII	GTYRAC	2 cut(s)	43, 295
HindII	GTYRAC	2 cut(s)	43, 295
HinfI	GANTC	2 cut(s)	418, 601
HpaII	CCGG	2 cut(s)	145, 423
HphI	GGTGA	3 cut(s)	89, 427, 438
Hpy166II	GTNNAC	4 cut(s)	43, 295, 468, 533
Hpy188I	TCNGA	2 cut(s)	430, 721
Hpy188III	TCNNGA	5 cut(s)	7, 172, 386, 400, 657
Hpy8I	GTNNAC	4 cut(s)	43, 295, 468, 533
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	7 cut(s)	4, 8, 383, 392, 433, 619, 625
HpyCH4III	ACNGT	2 cut(s)	77, 472
HpyCH4V	TGCA	4 cut(s)	350, 484, 500, 683
HpyF10VI	GCNNNNNNNGC	9 cut(s)	119, 149, 166, 196, 236, 440, 509, 632, 689
HpyF3I	CTNAG	6 cut(s)	123, 195, 282, 333, 462, 718
Hsp92II	CATG	5 cut(s)	354, 380, 415, 574, 600
HspAI	GCGC	3 cut(s)	120, 337, 487
KpnI	GGTACC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	285, 425
LguI	GCTCTTC	1 cut(s)	633
Lsp1109I	GCAGC	5 cut(s)	104, 334, 496, 512, 667
LweI	GCATC	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	328, 353, 415
MalI	GATC	2 cut(s)	287, 427
MboI	GATC	2 cut(s)	285, 425
MboII	GAAGA	2 cut(s)	17, 620
MflI	RGATCY	2 cut(s)	285, 425
MhlI	GDGCHC	4 cut(s)	115, 145, 171, 628
MlyI	GAGTC	2 cut(s)	412, 595
MnlI	CCTC	6 cut(s)	535, 538, 541, 682, 707, 715
MseI	TTAA	3 cut(s)	63, 564, 675
MspA1I	CMGCKG	2 cut(s)	117, 503
MspI	CCGG	2 cut(s)	145, 423
MspR9I	CCNGG	5 cut(s)	30, 92, 145, 251, 423
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	3 cut(s)	30, 92, 251
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	9 cut(s)	119, 149, 166, 196, 236, 440, 509, 632, 689
NciI	CCSGG	2 cut(s)	145, 423
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	2 cut(s)	285, 425
NlaIII	CATG	5 cut(s)	354, 380, 415, 574, 600
NlaIV	GGNNCC	7 cut(s)	70, 112, 142, 181, 267, 301, 736
NmuCI	GTSAC	2 cut(s)	328, 415
NspI	RCATGY	1 cut(s)	354
PasI	CCCWGGG	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	119, 349, 486, 502, 682
PleI	GAGTC	2 cut(s)	412, 595
PpsI	GAGTC	2 cut(s)	412, 595
Psp6I	CCWGG	3 cut(s)	28, 90, 249
PspGI	CCWGG	3 cut(s)	28, 90, 249
PspN4I	GGNNCC	7 cut(s)	70, 112, 142, 181, 267, 301, 736
PspPI	GGNCC	3 cut(s)	179, 299, 705
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	285, 425
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	3 cut(s)	128, 267, 467
RsaNI	GTAC	3 cut(s)	127, 266, 466
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	63, 564, 675
SatI	GCNGC	5 cut(s)	118, 348, 485, 501, 681
Sau3AI	GATC	2 cut(s)	285, 425
Sau96I	GGNCC	3 cut(s)	179, 299, 705
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	2 cut(s)	412, 595
ScrFI	CCNGG	5 cut(s)	30, 92, 145, 251, 423
SduI	GDGCHC	4 cut(s)	115, 145, 171, 628
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	179, 299
SmlI	CTYRAG	3 cut(s)	170, 581, 644
SmoI	CTYRAG	3 cut(s)	170, 581, 644
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	5 cut(s)	28, 90, 143, 249, 421
StyI	CCWWGG	4 cut(s)	106, 596, 708, 729
TaaI	ACNGT	2 cut(s)	77, 472
TatI	WGTACW	2 cut(s)	126, 465
Tru1I	TTAA	3 cut(s)	63, 564, 675
Tru9I	TTAA	3 cut(s)	63, 564, 675
TseFI	GTSAC	2 cut(s)	328, 415
TseI	GCWGC	5 cut(s)	117, 347, 484, 500, 680
Tsp45I	GTSAC	2 cut(s)	328, 415
TspDTI	ATGAA	2 cut(s)	147, 587
TspGWI	ACGGA	2 cut(s)	312, 464
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	179, 299
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.