Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001206

Physical Location & Seq

Genomic Coordinates Reverse (-)

9954582 .. 9955297

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACGTTGGAGGCGAATTTGGCTGTTGCTGGTCGCCCTAAACCAACCATCGTGAATATAGTTTCCACCGTCAACTTGGGCTGCAAATTGGACCTAAAGAGGATTGCGAGCCGTGTCAGAAACGCAGAGTACAATCCGAAACGGTTTCATGCCATCATAATGCGAATCCGGGAACCCAAAACCACCTCTCTCATCTTCTCCTCCGGCAAGATGGTCGTCACCGGCGCCAAATCCATAGAAGAGACCAAATTTGCGGCGAGGAAGCACAGCCGAATCGTCCAGAAAGTAGGGGTTGACGGAGGGGTTAAGGTACAGTTTATGGATTTCAAGATTCAAAACATCGTGGCATCCTGCAATGTCAACTTTGCGGTCAGGCTTGAGACTCTTTCCTTCTCCGATACTACTCTTGGGTGTGCCTCGTACGAAGCCGAGATTTTCCCGGGGCTGATATACAGGGTTCTGAAACCCAAGGTTGTCCTCCTCATCTTTGCGTCGGGGAACGTTGTCATCACTGGGGCCAAGAGCTTCGAGAATCACACGCTCAAGGCCTGGGAGCAAATGTACCCTCTTATTGCACAGCACCGGAGAAACTGCCCCGTCAACCTTGTAACATCACCGGTCCAAGAAAAAAGTGCACCAAAAAGAGGAAGAAAAAAGAGTGTTCCATCCAGTTCTGCCTCTGAGCCAGTTAGTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Glycolytic

Protein Analysis

233

Amino Acids

25.69

Weight (kDa)

10.09

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	15 - 95	6.8e-32	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	108 - 193	1.1e-25	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36460 AT2G36460 AT2G36460 AT3G52930 AT5G03690 AT5G03690 AT5G03690 AT5G03690
fragaria_vesca	FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980
malus_domestica	MD11G1158300.v1.1 MD12G1018700.v1.1 MD12G1018800.v1.1 MD14G1016700.v1.1 MD14G1016800.v1.1 MD17G1158400.v1.1
prunus_persica	Prupe.7G116500_v2.0.a1 Prupe.7G116600_v2.0.a1
pyrus_communis	pycom11g12860 pycom12g01550 pycom12g01560 pycom14g01430 pycom14g01440
rosa_chinensis	RchiOBHm_Chr3g0472251 RchiOBHm_Chr3g0472261
rosa_laevigata	RLG00000024095 RLG00000024096
rosa_multiflora	Rmu_co8224482.1_g000001 Rmu_sc0008192.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409130 Rroxscaffold_6G00409140
rosa_rugosa	Rorug03G0123100 Rorug03G0123100 Rorug03G0123200 Rorug03G0123200 Rorug03G0123300
rosa_samantha	Rh3AG175500 Rh3AG175600 Rh3BG201000 Rh3BG201100 Rh3CG192200 Rh3CG192300 Rh3CG199400 Rh3CG199500 Rh3DG173900 Rh3DG174000
rosa_wichuraiana	Rw3G016560 Rw3G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	2 cut(s)	254, 368
AclI	AACGTT	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	16, 248
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	131, 312, 422, 563
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgeI	ACCGGT	1 cut(s)	616
AgsI	TTSAA	2 cut(s)	328, 335
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	2 cut(s)	236, 374
Alw44I	GTGCAC	1 cut(s)	633
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	2 cut(s)	516, 546
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	16, 248
AsiGI	ACCGGT	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	91, 516, 619
AsuC2I	CCSGG	3 cut(s)	170, 440, 441
AsuHPI	GGTGA	2 cut(s)	211, 606
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	91, 619
BaeGI	GKGCMC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	4 cut(s)	56, 161, 205, 673
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	550
BcnI	CCSGG	3 cut(s)	170, 440, 441
BcoDI	GTCTC	2 cut(s)	236, 374
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	2 cut(s)	82, 255
BlsI	GCNGC	2 cut(s)	83, 256
Bme1390I	CCNGG	4 cut(s)	170, 440, 441, 550
Bme18I	GGWCC	2 cut(s)	91, 619
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	91, 516, 619
BmiI	GGNNCC	3 cut(s)	174, 226, 517
BmrFI	CCNGG	4 cut(s)	170, 440, 441, 550
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	398, 527
BpuMI	CCSGG	3 cut(s)	170, 440, 441
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	439, 440, 468, 549
BsaWI	WCCGGW	2 cut(s)	582, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	2 cut(s)	221, 616
Bse1I	ACTGG	3 cut(s)	517, 669, 686
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	4 cut(s)	439, 440, 468, 549
BseGI	GGATG	2 cut(s)	347, 665
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	3 cut(s)	517, 669, 686
BseRI	GAGGAG	2 cut(s)	190, 470
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	518, 548
BshNI	GGYRCC	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	6 cut(s)	169, 204, 222, 440, 583, 617
BsiWI	CGTACG	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	2 cut(s)	236, 374
BsnI	GGCC	2 cut(s)	518, 548
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	637
BspACI	CCGC	2 cut(s)	254, 368
BspANI	GGCC	2 cut(s)	518, 548
BspCNI	CTCAG	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	174, 226, 517
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	2 cut(s)	221, 616
BsrI	ACTGG	3 cut(s)	517, 669, 686
BssAI	RCCGGY	2 cut(s)	221, 616
BssECI	CCNNGG	4 cut(s)	439, 440, 468, 549
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	70, 144, 315
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	347, 665
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	236, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	4 cut(s)	168, 438, 439, 548
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	518, 548
BtsCI	GGATG	2 cut(s)	347, 665
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	221, 616
Cfr13I	GGNCC	3 cut(s)	91, 516, 619
Cfr9I	CCCGGG	1 cut(s)	439
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	4 cut(s)	130, 311, 421, 562
CspAI	ACCGGT	1 cut(s)	616
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	4 cut(s)	130, 311, 421, 562
DdeI	CTNAG	1 cut(s)	681
DinI	GGCGCC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	91, 619
Eco88I	CYCGRG	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	59, 150, 158, 236, 320, 451
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	82, 255
FokI	GGATG	2 cut(s)	334, 652
Fsp4HI	GCNGC	2 cut(s)	82, 255
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	82, 255
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	518, 548
HapII	CCGG	6 cut(s)	169, 204, 222, 440, 583, 617
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	4 cut(s)	73, 295, 361, 601
HindII	GTYRAC	4 cut(s)	73, 295, 361, 601
HinfI	GANTC	5 cut(s)	165, 273, 331, 382, 532
HpaII	CCGG	6 cut(s)	169, 204, 222, 440, 583, 617
HphI	GGTGA	2 cut(s)	211, 606
Hpy166II	GTNNAC	5 cut(s)	73, 295, 361, 601, 635
Hpy188I	TCNGA	5 cut(s)	119, 138, 397, 462, 682
Hpy188III	TCNNGA	4 cut(s)	52, 280, 328, 529
Hpy8I	GTNNAC	5 cut(s)	73, 295, 361, 601, 635
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	3 cut(s)	70, 144, 315
HpyCH4IV	ACGT	2 cut(s)	5, 501
HpyCH4V	TGCA	4 cut(s)	84, 354, 575, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	681
HpySE526I	ACGT	2 cut(s)	5, 501
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	356
MaeII	ACGT	2 cut(s)	5, 501
MaeIII	GTNAC	2 cut(s)	217, 607
MboII	GAAGA	3 cut(s)	187, 251, 660
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	3 cut(s)	16, 86, 248
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	376
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	6 cut(s)	169, 204, 222, 440, 583, 617
MspR9I	CCNGG	4 cut(s)	170, 440, 441, 550
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	20
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	3 cut(s)	170, 440, 441
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	3 cut(s)	174, 226, 517
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	165, 273, 331, 532
Pfl23II	CGTACG	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	83, 256
PleI	GAGTC	1 cut(s)	376
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	376
Psp1406I	AACGTT	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspLI	CGTACG	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	174, 226, 517
PspPI	GGNCC	3 cut(s)	91, 516, 619
RsaI	GTAC	4 cut(s)	131, 312, 422, 563
RsaNI	GTAC	4 cut(s)	130, 311, 421, 562
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	82, 255
Sau96I	GGNCC	3 cut(s)	91, 516, 619
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	4 cut(s)	170, 440, 441, 550
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	8 cut(s)	8, 96, 188, 312, 474, 504, 527, 606
SfaNI	GCATC	1 cut(s)	356
SfoI	GGCGCC	1 cut(s)	226
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	91, 619
SmaI	CCCGGG	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	377, 542
SmoI	CTYRAG	2 cut(s)	377, 542
Sse9I	AATT	3 cut(s)	16, 86, 248
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	2 cut(s)	254, 368
SspDI	GGCGCC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	168, 438, 439, 548
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	70, 144, 315
TaiI	ACGT	2 cut(s)	8, 504
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	16, 86, 248
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	4 cut(s)	165, 273, 331, 532
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	312
TspMI	CCCGGG	1 cut(s)	439
TspRI	CASTG	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	2 cut(s)	91, 619
XapI	RAATTY	2 cut(s)	16, 248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.