Rw3G016570

fructose-bisphosphate aldolase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
17621521 .. 17623458
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016570.1

Sequence Viewer

Length: 1077 bp
ATGACGGCCTTCAAGGGAAAGTACCATGATGAGCTTATTGCCAATGCTGCCTACATTGGCACCCCTGGAAAGGGTATTCTTGCTGCTGATGAGTCAACTGGCACAATTGGCAAGCGTTTTGCCAGCATCAATGTTGAGAATGTTGAGGAAAACAGGCGTGCTCTTCGCGAACTCCTCTTCACTGCCCCCGGTGGCCTCCAATACCTTAGTGGAGTGATCCTTTTTGAGGAAACCCTCTACCAGAAGACAGCTGAAGGCAAGCCATTCGTTGAGGTTTTGAAGGAAGGTGGTGTTCTTCCTGGCATTAAGGTTGACAAGGGCGTTGTTGAGCTTGCTGGTACCAATGGTGAGACCACAACTCAGGGTCTGGATGGCCTGGGCGCACGCTGCGCAAAGTACTATGAAGCTGGTGCTCGGTTTGCCAAATGGCGTGCTGTGCTCAAGATTGGTCCCAATGAGCCGTCACAGCTGTCCATCAACGAGAATGCTAATGGATTGGCTCGTTATGCTATCATCTGCCAGGAGAATGGCTTGGTGCCCATTGTTGAGCCTGAGATCCTTGTTGATGGACCCCATGACATCAACAAGTGTGCTGATGTGACTGAGCGCGTCCTTGCTGCATGTTACAAGGCTCTCAATGACCACCACGTCCTTCTTGAAGGAACTCTCTTGAAGCCCAACATGGTGACTCCCGGATCTGATGCCAAGAAGGCTTCACCAGAAGTGATTGCTGAGTACACAGTTCGTGCCTTGCAGCGCACTACCCCTGCAGCTGTCCCCGCTGTTATGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCTACCCTCAACCTTAACGCCATGAACAAGCTCAAGGGAAAGAAGCCATGGACTCTTTCCTTCTCATTCGGCCGCGCTCTTCAGTCCAGCACTCTAAAGGCTTGGTCAGGAAAGAAAGAGAATGTTAAGGCTGCACAGGAGGCTTTCCTCACAAGGGCCAAGGCCAACTCAGAGGCAACCTTGGGAACCTACAAGGGCGATGCCAAGCTCGGTGAAGGTGCTGCAGAGTCTCTTCATGTCAAGGACTACAAGTATTGA

Protein Analysis

358

Amino Acids

38.44

Weight (kDa)

7.62

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycolytic PF00274 11 - 358 4e-175 Fructose-bisphosphate aldolase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
Acc16I TGCGCA 1 cut(s) 391
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 3 cut(s) 59, 338, 535
AccII CGCG 3 cut(s) 168, 609, 894
AciI CCGC 2 cut(s) 780, 892
AclWI GGATC 3 cut(s) 211, 550, 703
AcoI YGGCCR 1 cut(s) 889
AcuI CTGAAG 2 cut(s) 273, 884
AfaI GTAC 4 cut(s) 23, 340, 398, 737
AfiI CCNNNNNNNGG 4 cut(s) 70, 71, 226, 973
AgsI TTSAA 4 cut(s) 13, 280, 659, 673
AjiI CACGTC 1 cut(s) 649
AjnI CCWGG 4 cut(s) 64, 298, 375, 519
AluBI AGCT 8 cut(s) 34, 251, 331, 407, 469, 773, 850, 1027
AluI AGCT 8 cut(s) 34, 251, 331, 407, 469, 773, 850, 1027
Alw21I GWGCWC 3 cut(s) 163, 415, 441
Alw26I GTCTC 2 cut(s) 344, 1053
AlwI GGATC 3 cut(s) 211, 550, 703
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 6 cut(s) 6, 193, 373, 889, 975, 981
ApeKI GCWGC 8 cut(s) 47, 83, 387, 617, 754, 770, 950, 1040
Asp718I GGTACC 1 cut(s) 338
AspLEI GCGC 5 cut(s) 383, 392, 609, 759, 896
AspS9I GGNCC 3 cut(s) 449, 569, 975
AsuC2I CCSGG 2 cut(s) 189, 693
AsuHPI GGTGA 4 cut(s) 359, 697, 708, 1043
AvaII GGWCC 2 cut(s) 449, 569
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 3 cut(s) 59, 338, 535
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 3 cut(s) 163, 415, 441
BbvI GCAGC 8 cut(s) 34, 70, 374, 604, 766, 782, 937, 1027
BccI CCATC 3 cut(s) 365, 482, 560
BceAI ACGGC 2 cut(s) 21, 445
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 4 cut(s) 66, 300, 377, 521
BcnI CCSGG 2 cut(s) 189, 693
BcoDI GTCTC 2 cut(s) 344, 1053
BfmI CTRYAG 2 cut(s) 768, 1041
BglI GCCNNNNNGGC 1 cut(s) 710
BisI GCNGC 9 cut(s) 48, 84, 388, 618, 755, 771, 892, 951, 1041
BlsI GCNGC 9 cut(s) 49, 85, 389, 619, 756, 772, 893, 952, 1042
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 6 cut(s) 66, 189, 300, 377, 521, 693
Bme18I GGWCC 2 cut(s) 449, 569
BmgBI CACGTC 1 cut(s) 649
BmgT120I GGNCC 3 cut(s) 449, 569, 975
BmiI GGNNCC 6 cut(s) 61, 340, 451, 537, 571, 1006
BmrFI CCNGG 6 cut(s) 66, 189, 300, 377, 521, 693
BmsI GCATC 3 cut(s) 135, 691, 1009
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 425, 836
BpuMI CCSGG 2 cut(s) 189, 693
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 6 cut(s) 64, 187, 376, 866, 978, 999
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 71, 226, 973
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 4 cut(s) 66, 300, 377, 521
BseDI CCNNGG 6 cut(s) 64, 187, 376, 866, 978, 999
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 4 cut(s) 70, 71, 226, 973
BseMII CTCAG 5 cut(s) 374, 543, 594, 723, 1002
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 3 cut(s) 164, 827, 830
BseSI GKGCMC 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 889
BseXI GCAGC 8 cut(s) 34, 70, 374, 604, 766, 782, 937, 1027
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 3 cut(s) 168, 609, 894
Bsh1285I CGRYCG 1 cut(s) 892
BshFI GGCC 6 cut(s) 8, 195, 375, 891, 977, 983
BshNI GGYRCC 3 cut(s) 59, 338, 535
BsiEI CGRYCG 1 cut(s) 892
BsiHKAI GWGCWC 3 cut(s) 163, 415, 441
BsiSI CCGG 2 cut(s) 189, 693
BslFI GGGAC 2 cut(s) 435, 761
BslI CCNNNNNNNGG 4 cut(s) 70, 71, 226, 973
BsmAI GTCTC 2 cut(s) 344, 1053
BsmFI GGGAC 2 cut(s) 435, 761
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 6 cut(s) 8, 195, 375, 891, 977, 983
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 4 cut(s) 163, 415, 441, 540
Bsp143I GATC 3 cut(s) 216, 555, 695
Bsp19I CCATGG 1 cut(s) 866
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 2 cut(s) 780, 892
BspANI GGCC 6 cut(s) 8, 195, 375, 891, 977, 983
BspCNI CTCAG 5 cut(s) 373, 544, 595, 724, 1001
BspFNI CGCG 3 cut(s) 168, 609, 894
BspLI GGNNCC 6 cut(s) 61, 340, 451, 537, 571, 1006
BspMAI CTGCAG 2 cut(s) 772, 1045
BspPI GGATC 3 cut(s) 211, 550, 703
BspQI GCTCTTC 2 cut(s) 168, 903
BspT107I GGYRCC 3 cut(s) 59, 338, 535
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 6 cut(s) 64, 187, 376, 866, 978, 999
BssMI GATC 3 cut(s) 216, 555, 695
BssT1I CCWWGG 3 cut(s) 866, 978, 999
Bst2UI CCWGG 4 cut(s) 66, 300, 377, 521
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 4 cut(s) 168, 182, 903, 1056
BstC8I GCNNGC 7 cut(s) 113, 124, 159, 260, 333, 385, 432
BstDEI CTNAG 6 cut(s) 206, 360, 552, 603, 732, 988
BstDSI CCRYGG 1 cut(s) 866
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 3 cut(s) 168, 609, 894
BstHHI GCGC 5 cut(s) 383, 392, 609, 759, 896
BstKTI GATC 3 cut(s) 219, 558, 698
BstMAI GTCTC 2 cut(s) 344, 1053
BstMBI GATC 3 cut(s) 216, 555, 695
BstMCI CGRYCG 1 cut(s) 892
BstNI CCWGG 4 cut(s) 66, 300, 377, 521
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 6 cut(s) 64, 187, 298, 375, 519, 691
BstSFI CTRYAG 2 cut(s) 768, 1041
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 3 cut(s) 168, 609, 894
BstV1I GCAGC 8 cut(s) 34, 70, 374, 604, 766, 782, 937, 1027
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 555, 695
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 2 cut(s) 555, 695
BstZI CGGCCG 1 cut(s) 889
BsuRI GGCC 6 cut(s) 8, 195, 375, 891, 977, 983
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 1 cut(s) 1032
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BtuMI TCGCGA 1 cut(s) 168
Cac8I GCNNGC 7 cut(s) 113, 124, 159, 260, 333, 385, 432
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 5 cut(s) 383, 392, 609, 759, 896
Cfr13I GGNCC 3 cut(s) 449, 569, 975
CseI GACGC 1 cut(s) 598
Csp6I GTAC 4 cut(s) 22, 339, 397, 736
CviAII CATG 7 cut(s) 26, 575, 621, 682, 841, 867, 1055
CviQI GTAC 4 cut(s) 22, 339, 397, 736
DdeI CTNAG 6 cut(s) 206, 360, 552, 603, 732, 988
DpnI GATC 3 cut(s) 218, 557, 697
DpnII GATC 3 cut(s) 216, 555, 695
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 889
EagI CGGCCG 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 168, 182, 903, 1056
EarI CTCTTC 4 cut(s) 168, 182, 903, 1056
EclXI CGGCCG 1 cut(s) 889
Eco130I CCWWGG 3 cut(s) 866, 978, 999
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 449, 569
Eco52I CGGCCG 1 cut(s) 889
Eco57I CTGAAG 2 cut(s) 273, 884
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 4 cut(s) 64, 298, 375, 519
EcoT14I CCWWGG 3 cut(s) 866, 978, 999
ErhI CCWWGG 3 cut(s) 866, 978, 999
FaeI CATG 7 cut(s) 29, 578, 624, 685, 844, 870, 1058
FaqI GGGAC 2 cut(s) 435, 761
FatI CATG 7 cut(s) 25, 574, 620, 681, 840, 866, 1054
FauI CCCGC 1 cut(s) 787
Fnu4HI GCNGC 9 cut(s) 48, 84, 388, 618, 755, 771, 892, 951, 1041
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 9 cut(s) 48, 84, 388, 618, 755, 771, 892, 951, 1041
FspI TGCGCA 1 cut(s) 391
GlaI GCGC 5 cut(s) 382, 391, 608, 758, 895
GluI GCNGC 9 cut(s) 48, 84, 388, 618, 755, 771, 892, 951, 1041
HaeIII GGCC 6 cut(s) 8, 195, 375, 891, 977, 983
HapII CCGG 2 cut(s) 189, 693
HgaI GACGC 1 cut(s) 598
HhaI GCGC 5 cut(s) 383, 392, 609, 759, 896
Hin1II CATG 7 cut(s) 29, 578, 624, 685, 844, 870, 1058
Hin6I GCGC 5 cut(s) 381, 390, 607, 757, 894
HinP1I GCGC 5 cut(s) 381, 390, 607, 757, 894
HincII GTYRAC 2 cut(s) 96, 313
HindII GTYRAC 2 cut(s) 96, 313
HinfI GANTC 4 cut(s) 92, 688, 871, 1046
HpaII CCGG 2 cut(s) 189, 693
HphI GGTGA 4 cut(s) 359, 697, 708, 1043
Hpy166II GTNNAC 4 cut(s) 96, 313, 738, 803
Hpy188I TCNGA 2 cut(s) 700, 991
Hpy188III TCNNGA 6 cut(s) 167, 368, 442, 656, 670, 927
Hpy8I GTNNAC 4 cut(s) 96, 313, 738, 803
HpyAV CCTTC 9 cut(s) 19, 248, 274, 278, 653, 662, 703, 889, 1028
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 5 cut(s) 620, 754, 770, 953, 1043
HpyF3I CTNAG 6 cut(s) 206, 360, 552, 603, 732, 988
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 7 cut(s) 29, 578, 624, 685, 844, 870, 1058
HspAI GCGC 5 cut(s) 381, 390, 607, 757, 894
KpnI GGTACC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 216, 555, 695
LguI GCTCTTC 2 cut(s) 168, 903
Lsp1109I GCAGC 8 cut(s) 34, 70, 374, 604, 766, 782, 937, 1027
LweI GCATC 3 cut(s) 135, 691, 1009
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 4 cut(s) 462, 598, 623, 685
MalI GATC 3 cut(s) 218, 557, 697
MboI GATC 3 cut(s) 216, 555, 695
MboII GAAGA 6 cut(s) 155, 169, 256, 287, 890, 1043
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 555, 695
MhlI GDGCHC 4 cut(s) 163, 415, 441, 540
MluCI AATT 1 cut(s) 105
MlyI GAGTC 4 cut(s) 101, 682, 865, 1055
MseI TTAA 3 cut(s) 306, 834, 945
MspA1I CMGCKG 4 cut(s) 251, 469, 773, 782
MspI CCGG 2 cut(s) 189, 693
MspR9I CCNGG 6 cut(s) 66, 189, 300, 377, 521, 693
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 4 cut(s) 66, 300, 377, 521
MvnI CGCG 3 cut(s) 168, 609, 894
NciI CCSGG 2 cut(s) 189, 693
NcoI CCATGG 1 cut(s) 866
NdeII GATC 3 cut(s) 216, 555, 695
NlaIII CATG 7 cut(s) 29, 578, 624, 685, 844, 870, 1058
NlaIV GGNNCC 6 cut(s) 61, 340, 451, 537, 571, 1006
NmuCI GTSAC 3 cut(s) 462, 598, 685
NruI TCGCGA 1 cut(s) 168
NsbI TGCGCA 1 cut(s) 391
NspI RCATGY 1 cut(s) 624
PciSI GCTCTTC 2 cut(s) 168, 903
PctI GAATGC 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 9 cut(s) 49, 85, 389, 619, 756, 772, 893, 952, 1042
PleI GAGTC 4 cut(s) 100, 682, 865, 1054
PpsI GAGTC 4 cut(s) 100, 682, 865, 1054
Psp6I CCWGG 4 cut(s) 64, 298, 375, 519
PspGI CCWGG 4 cut(s) 64, 298, 375, 519
PspN4I GGNNCC 6 cut(s) 61, 340, 451, 537, 571, 1006
PspPI GGNCC 3 cut(s) 449, 569, 975
PstI CTGCAG 2 cut(s) 772, 1045
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 555, 695
PvuII CAGCTG 3 cut(s) 251, 469, 773
RruI TCGCGA 1 cut(s) 168
RsaI GTAC 4 cut(s) 23, 340, 398, 737
RsaNI GTAC 4 cut(s) 22, 339, 397, 736
SapI GCTCTTC 2 cut(s) 168, 903
SaqAI TTAA 3 cut(s) 306, 834, 945
SatI GCNGC 9 cut(s) 48, 84, 388, 618, 755, 771, 892, 951, 1041
Sau3AI GATC 3 cut(s) 216, 555, 695
Sau96I GGNCC 3 cut(s) 449, 569, 975
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 4 cut(s) 101, 682, 865, 1055
ScrFI CCNGG 6 cut(s) 66, 189, 300, 377, 521, 693
SduI GDGCHC 4 cut(s) 163, 415, 441, 540
SfaNI GCATC 3 cut(s) 135, 691, 1009
SfcI CTRYAG 2 cut(s) 768, 1041
SinI GGWCC 2 cut(s) 449, 569
SmlI CTYRAG 2 cut(s) 440, 851
SmoI CTYRAG 2 cut(s) 440, 851
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 780, 892
StyD4I CCNGG 6 cut(s) 64, 187, 298, 375, 519, 691
StyI CCWWGG 3 cut(s) 866, 978, 999
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 1 cut(s) 651
TasI AATT 1 cut(s) 105
TatI WGTACW 2 cut(s) 396, 735
TauI GCSGC 1 cut(s) 894
Tru1I TTAA 3 cut(s) 306, 834, 945
Tru9I TTAA 3 cut(s) 306, 834, 945
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 462, 598, 685
TseI GCWGC 8 cut(s) 47, 83, 387, 617, 754, 770, 950, 1040
Tsp45I GTSAC 3 cut(s) 462, 598, 685
TspDTI ATGAA 3 cut(s) 417, 857, 1043
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 449, 569
XagI CCTNNNNNAGG 1 cut(s) 224
XceI RCATGY 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.