Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001206

Physical Location & Seq

Genomic Coordinates Reverse (-)

9931201 .. 9938560

Gene Structure 7360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0123100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTACTAGGACATCTGATGATCATCGAGTCAAGAGAATTTGTACTGGCCATTCTGTCTCATGCTTAACCAACACAAATGAAAACAATCAAATCTTCAAACCACAGCCTGTCTGTAACTCAAACAGTTCTGGAAGTTTGTTGACAATTGAGGATGAATATAAACTGAAGCCAGCTTATGATTTGACCATTCTGGATGATATGAGAAAATATGGTCCATCCTGCAAAATTTATCCTGCCTCCTCCTTAATGGATTCCGATGAATCAGCCCATGGTTGGACCATTGTGGATGATATGGAACAATATGGTAACTCCTGCAAGGAGTTTTCTACCTCTGCCTTAATTGATAAAGATGAGTCAGCCCATGGTTCAAACAAGTTAACTCCAGAATACTCCAACCTTTGTAATGCAACCTCTACGAATGTTAATGATTCAGTCAATAGTTCGGATTCTTCAAGTTTAGATGAGTGTGATTCAGAACTCGAAAGAGCTTTGAGGTTATTGATTTCCAGTGATGATGATCTTCCAAGATCTACTCCTTCAGCTCACTCTTCATCTTCACTGAGGTCGAGCAATAGAAATTCAAAGGCTGCAGAAATATTGAGATTGCTCTTCTCAGATGGTCAGTACTTTCGAAAGTCTGTTCCAATTGGGCCTGGTTTTCAGGCTGAAGTTCCTGAGTGGACAGGTCCTGTCAATAGGAAAAATCGTTACGTTGGTGATGCTTCAAAGAAGTGGTTGGGCACTCGAATGTATCCCATCAAACGGTTAAAAAATGCAGGAGCTGATACAAAATCGATTGGGAAGGGGAGACCTGACTCTTGTTCTTGTGTCTCTCCTGGATCTGCTGGTTGTGTCAAACACCACATCGATGAAGCGAGACTCCGTTTGCAAGCCGAAATTGGTCCTGCATTCCGGACTTGGAAGTTTGATGAAATGGGAGAATTTGCCTCGAAGTCATGGACTTTGAAAGAACAAAGTACCTTCGAATCTCTAGTGAGAAAGAATCCGCTATCAAATGAAGCAAGCTTTTGGAAGCTTGCCTTTAAGCGTTTTCCTAATAAATGCAGGAAAAGCATTGTGAGTTATTACAATAACGTGTTCATAACTAGACGCATGAGCCTCCAGACTAGGTCTTCTGTTGATGAAATTGATAGTGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Glycolytic

Protein Analysis

389

Amino Acids

43.44

Weight (kDa)

7.03

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36460 AT2G36460 AT2G36460 AT3G52930 AT5G03690 AT5G03690 AT5G03690 AT5G03690
fragaria_vesca	FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980
malus_domestica	MD11G1158300.v1.1 MD12G1018700.v1.1 MD12G1018800.v1.1 MD14G1016700.v1.1 MD14G1016800.v1.1 MD17G1158400.v1.1
prunus_persica	Prupe.7G116500_v2.0.a1 Prupe.7G116600_v2.0.a1
pyrus_communis	pycom11g12860 pycom12g01550 pycom12g01560 pycom14g01430 pycom14g01440
rosa_chinensis	RchiOBHm_Chr3g0472251 RchiOBHm_Chr3g0472261
rosa_laevigata	RLG00000024095 RLG00000024096
rosa_multiflora	Rmu_co8224482.1_g000001 Rmu_sc0008192.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409130 Rroxscaffold_6G00409140
rosa_rugosa	Rorug03G0123100 Rorug03G0123100 Rorug03G0123200 Rorug03G0123200 Rorug03G0123300
rosa_samantha	Rh3AG175500 Rh3AG175600 Rh3BG201000 Rh3BG201100 Rh3CG192200 Rh3CG192300 Rh3CG199400 Rh3CG199500 Rh3DG173900 Rh3DG174000
rosa_wichuraiana	Rw3G016560 Rw3G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	915
AciI	CCGC	1 cut(s)	1010
AclWI	GGATC	1 cut(s)	850
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	4 cut(s)	39, 228, 580, 944
AcuI	CTGAAG	3 cut(s)	188, 525, 690
AfaI	GTAC	3 cut(s)	46, 629, 982
AfiI	CCNNNNNNNGG	2 cut(s)	276, 765
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	6 cut(s)	100, 372, 456, 585, 729, 970
AjnI	CCWGG	2 cut(s)	655, 838
AluBI	AGCT	6 cut(s)	176, 491, 545, 785, 1029, 1039
AluI	AGCT	6 cut(s)	176, 491, 545, 785, 1029, 1039
Alw26I	GTCTC	4 cut(s)	64, 805, 838, 874
AlwI	GGATC	1 cut(s)	850
AlwNI	CAGNNNCTG	2 cut(s)	692, 785
Aor13HI	TCCGGA	1 cut(s)	915
AoxI	GGCC	2 cut(s)	49, 653
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	4 cut(s)	39, 228, 580, 944
AspS9I	GGNCC	5 cut(s)	215, 279, 653, 689, 905
AsuHPI	GGTGA	1 cut(s)	731
AsuII	TTCGAA	2 cut(s)	634, 987
AvaII	GGWCC	4 cut(s)	215, 279, 689, 905
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	1128
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	3 cut(s)	226, 614, 767
BciT130I	CCWGG	2 cut(s)	657, 840
BciVI	GTATCC	1 cut(s)	765
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	4 cut(s)	64, 805, 838, 874
BfaI	CTAG	5 cut(s)	9, 995, 1110, 1131, 1168
BfmI	CTRYAG	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	765
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	657, 840
Bme18I	GGWCC	4 cut(s)	215, 279, 689, 905
BmgT120I	GGNCC	5 cut(s)	215, 279, 653, 689, 905
BmrFI	CCNGG	2 cut(s)	657, 840
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	1128
BpmI	CTGGAG	2 cut(s)	369, 1109
Bpu14I	TTCGAA	2 cut(s)	634, 987
Bsa29I	ATCGAT	2 cut(s)	797, 870
BsaBI	GATNNNNATC	2 cut(s)	24, 519
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	2 cut(s)	271, 364
BsaWI	WCCGGW	1 cut(s)	915
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 765
Bse1I	ACTGG	2 cut(s)	52, 510
Bse8I	GATNNNNATC	2 cut(s)	24, 519
BseAI	TCCGGA	1 cut(s)	915
BseBI	CCWGG	2 cut(s)	657, 840
BseCI	ATCGAT	2 cut(s)	797, 870
BseDI	CCNNGG	2 cut(s)	271, 364
BseGI	GGATG	4 cut(s)	160, 202, 218, 295
BseJI	GATNNNNATC	2 cut(s)	24, 519
BseLI	CCNNNNNNNGG	2 cut(s)	276, 765
BseMII	CTCAG	3 cut(s)	554, 630, 669
BseNI	ACTGG	2 cut(s)	52, 510
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	1 cut(s)	577
BshFI	GGCC	2 cut(s)	51, 655
BshVI	ATCGAT	2 cut(s)	797, 870
BsiSI	CCGG	1 cut(s)	916
BslI	CCNNNNNNNGG	2 cut(s)	276, 765
BsmAI	GTCTC	4 cut(s)	64, 805, 838, 874
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	2 cut(s)	51, 655
Bso31I	GGTCTC	1 cut(s)	805
Bsp119I	TTCGAA	2 cut(s)	634, 987
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	22, 520, 530, 842
Bsp19I	CCATGG	2 cut(s)	271, 364
BspACI	CCGC	1 cut(s)	1010
BspANI	GGCC	2 cut(s)	51, 655
BspCNI	CTCAG	3 cut(s)	555, 629, 670
BspDI	ATCGAT	2 cut(s)	797, 870
BspEI	TCCGGA	1 cut(s)	915
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	617
BspT104I	TTCGAA	2 cut(s)	634, 987
BspTNI	GGTCTC	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	52, 510
BssECI	CCNNGG	2 cut(s)	271, 364
BssMI	GATC	4 cut(s)	22, 520, 530, 842
BssT1I	CCWWGG	2 cut(s)	271, 364
Bst2UI	CCWGG	2 cut(s)	657, 840
Bst4CI	ACNGT	2 cut(s)	128, 768
Bst6I	CTCTTC	2 cut(s)	556, 617
BstBI	TTCGAA	2 cut(s)	634, 987
BstC8I	GCNNGC	4 cut(s)	174, 894, 1027, 1041
BstDEI	CTNAG	3 cut(s)	563, 616, 678
BstDSI	CCRYGG	2 cut(s)	271, 364
BstF5I	GGATG	4 cut(s)	160, 202, 218, 295
BstKTI	GATC	4 cut(s)	25, 523, 533, 845
BstMAI	GTCTC	4 cut(s)	64, 805, 838, 874
BstMBI	GATC	4 cut(s)	22, 520, 530, 842
BstMWI	GCNNNNNNNGC	1 cut(s)	1074
BstNI	CCWGG	2 cut(s)	657, 840
BstSCI	CCNGG	2 cut(s)	655, 838
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	746
BstV1I	GCAGC	1 cut(s)	577
BstV2I	GAAGAC	1 cut(s)	1128
BstX2I	RGATCY	2 cut(s)	530, 842
BstYI	RGATCY	2 cut(s)	530, 842
Bsu15I	ATCGAT	2 cut(s)	797, 870
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	51, 655
BsuTUI	ATCGAT	2 cut(s)	797, 870
BtgI	CCRYGG	2 cut(s)	271, 364
BtsCI	GGATG	4 cut(s)	160, 202, 218, 295
BtsIMutI	CAGTG	2 cut(s)	517, 560
Cac8I	GCNNGC	4 cut(s)	174, 894, 1027, 1041
CaiI	CAGNNNCTG	2 cut(s)	692, 785
Cfr13I	GGNCC	5 cut(s)	215, 279, 653, 689, 905
ClaI	ATCGAT	2 cut(s)	797, 870
CseI	GACGC	1 cut(s)	1122
Csp6I	GTAC	3 cut(s)	45, 628, 981
CviAII	CATG	5 cut(s)	63, 272, 365, 960, 1117
CviQI	GTAC	3 cut(s)	45, 628, 981
DdeI	CTNAG	3 cut(s)	563, 616, 678
DpnI	GATC	4 cut(s)	24, 522, 532, 844
DpnII	GATC	4 cut(s)	22, 520, 530, 842
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	556, 617
EarI	CTCTTC	2 cut(s)	556, 617
Eco130I	CCWWGG	2 cut(s)	271, 364
Eco31I	GGTCTC	1 cut(s)	805
Eco47I	GGWCC	4 cut(s)	215, 279, 689, 905
Eco57I	CTGAAG	3 cut(s)	188, 525, 690
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	655, 838
EcoT14I	CCWWGG	2 cut(s)	271, 364
ErhI	CCWWGG	2 cut(s)	271, 364
FaeI	CATG	5 cut(s)	66, 275, 368, 963, 1120
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FatI	CATG	5 cut(s)	62, 271, 364, 959, 1116
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	4 cut(s)	167, 205, 209, 302
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	5 cut(s)	9, 995, 1110, 1131, 1168
GluI	GCNGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	369, 1109
HaeIII	GGCC	2 cut(s)	51, 655
HapII	CCGG	1 cut(s)	916
HgaI	GACGC	1 cut(s)	1122
Hin1II	CATG	5 cut(s)	66, 275, 368, 963, 1120
HincII	GTYRAC	2 cut(s)	144, 381
HindII	GTYRAC	2 cut(s)	144, 381
HindIII	AAGCTT	2 cut(s)	1027, 1037
HpaI	GTTAAC	1 cut(s)	381
HpaII	CCGG	1 cut(s)	916
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	3 cut(s)	144, 381, 684
Hpy188I	TCNGA	5 cut(s)	19, 259, 448, 478, 619
Hpy188III	TCNNGA	7 cut(s)	34, 132, 194, 386, 677, 916, 1126
Hpy8I	GTNNAC	3 cut(s)	144, 381, 684
HpyAV	CCTTC	3 cut(s)	549, 799, 994
HpyCH4III	ACNGT	2 cut(s)	128, 768
HpyCH4IV	ACGT	2 cut(s)	714, 1098
HpyCH4V	TGCA	8 cut(s)	225, 318, 410, 593, 779, 892, 911, 1068
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1074
HpyF3I	CTNAG	3 cut(s)	563, 616, 678
HpySE526I	ACGT	2 cut(s)	714, 1098
Hsp92II	CATG	5 cut(s)	66, 275, 368, 963, 1120
Kpn2I	TCCGGA	1 cut(s)	915
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	22, 520, 530, 842
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	5 cut(s)	9, 995, 1110, 1131, 1168
MaeII	ACGT	2 cut(s)	714, 1098
MaeIII	GTNAC	3 cut(s)	116, 308, 710
MalI	GATC	4 cut(s)	24, 522, 532, 844
MboI	GATC	4 cut(s)	22, 520, 530, 842
MboII	GAAGA	7 cut(s)	88, 444, 515, 543, 549, 604, 1128
MfeI	CAATTG	2 cut(s)	147, 648
MflI	RGATCY	2 cut(s)	530, 842
MhlI	GDGCHC	1 cut(s)	746
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	9 cut(s)	39, 147, 228, 342, 580, 648, 900, 944, 1149
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	4 cut(s)	39, 365, 812, 876
MmeI	TCCRAC	2 cut(s)	257, 420
MnlI	CCTC	9 cut(s)	145, 250, 253, 343, 424, 489, 558, 961, 1133
Mox20I	TGGCCA	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	7 cut(s)	68, 248, 341, 380, 426, 770, 1047
MslI	CAYNNNNRTG	2 cut(s)	749, 870
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	1 cut(s)	916
MspR9I	CCNGG	2 cut(s)	657, 840
MunI	CAATTG	2 cut(s)	147, 648
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	657, 840
MwoI	GCNNNNNNNGC	1 cut(s)	1074
NcoI	CCATGG	2 cut(s)	271, 364
NdeII	GATC	4 cut(s)	22, 520, 530, 842
NlaIII	CATG	5 cut(s)	66, 275, 368, 963, 1120
NspV	TTCGAA	2 cut(s)	634, 987
PciSI	GCTCTTC	1 cut(s)	617
PctI	GAATGC	1 cut(s)	911
PfeI	GAWTC	7 cut(s)	254, 263, 431, 449, 473, 989, 1006
PflFI	GACNNNGTC	1 cut(s)	1132
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	4 cut(s)	38, 364, 812, 876
PpsI	GAGTC	4 cut(s)	38, 364, 812, 876
PpuMI	RGGWCCY	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	655, 838
PspGI	CCWGG	2 cut(s)	655, 838
PspPI	GGNCC	5 cut(s)	215, 279, 653, 689, 905
PspPPI	RGGWCCY	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	692, 785
PsuI	RGATCY	2 cut(s)	530, 842
PsyI	GACNNNGTC	1 cut(s)	1132
RsaI	GTAC	3 cut(s)	46, 629, 982
RsaNI	GTAC	3 cut(s)	45, 628, 981
RseI	CAYNNNNRTG	2 cut(s)	749, 870
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	7 cut(s)	68, 248, 341, 380, 426, 770, 1047
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	4 cut(s)	22, 520, 530, 842
Sau96I	GGNCC	5 cut(s)	215, 279, 653, 689, 905
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	4 cut(s)	39, 365, 812, 876
ScrFI	CCNGG	2 cut(s)	657, 840
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	2 cut(s)	634, 987
SinI	GGWCC	4 cut(s)	215, 279, 689, 905
SmiMI	CAYNNNNRTG	2 cut(s)	749, 870
Sse9I	AATT	9 cut(s)	39, 147, 228, 342, 580, 648, 900, 944, 1149
SsiI	CCGC	1 cut(s)	1010
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	5 cut(s)	9, 995, 1110, 1131, 1168
StyD4I	CCNGG	2 cut(s)	655, 838
StyI	CCWWGG	2 cut(s)	271, 364
TaaI	ACNGT	2 cut(s)	128, 768
TaiI	ACGT	2 cut(s)	717, 1101
TaqI	TCGA	9 cut(s)	28, 483, 569, 634, 748, 797, 870, 953, 987
TasI	AATT	9 cut(s)	39, 147, 228, 342, 580, 648, 900, 944, 1149
TatI	WGTACW	2 cut(s)	44, 627
TfiI	GAWTC	7 cut(s)	254, 263, 431, 449, 473, 989, 1006
Tru1I	TTAA	7 cut(s)	68, 248, 341, 380, 426, 770, 1047
Tru9I	TTAA	7 cut(s)	68, 248, 341, 380, 426, 770, 1047
TscAI	CASTG	2 cut(s)	517, 567
TseI	GCWGC	1 cut(s)	590
TspDTI	ATGAA	9 cut(s)	96, 171, 276, 543, 888, 948, 1035, 1093, 1161
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	2 cut(s)	517, 567
Tth111I	GACNNNGTC	1 cut(s)	1132
VpaK11BI	GGWCC	4 cut(s)	215, 279, 689, 905
XapI	RAATTY	4 cut(s)	39, 228, 580, 944
XspI	CTAG	5 cut(s)	9, 995, 1110, 1131, 1168
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.