Rroxscaffold_6G00409130

fructose-bisphosphate aldolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
31668036 .. 31670427
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409130.1

Sequence Viewer

Length: 1086 bp
ATGACTGCTTACAGAGGCAAATACGCTGATGAGCTCATTGCCAATGCTGCCTACATTGGCACTCCTGGAAAGGGTATTCTAGCTGCTGATGAGTCCACTGGCACCATTGGAAAACGTTTTTCCAGCATCAATGTTGAGAATGTTGAAGAGAACAGGCGCGCTCTTCGTGAGCTCCTCTTCACCGCCCCCAATGTCCTCCAGTACCTTAGTGGAGTGATCCTCTTTGAGGAAACCCTCTACCAGAAAACAGCTGCAGGCAAGCCTTTCGTTGATGTCTTGAAGGAAGGTGGTGTTCTTCCTGGTATCAAGGTTGACAAGGGTGTTGTTGAGCTTAAAGGCACCGACTGTGAGACCACAACCCAGGGTTTGGATGGCCTTGGTGCCCGCTGCGCCAAGTACTATGAAGCTGGTGCCCGGTTTGCCAAATGGCGTGCTGTGCTCAAGATTGGTCCCAATGAGCCATCTCAGCTTTCAATCAACGAGAATGCCAATGGCTTGGCTCGTTATGCTATCATCTGCCAGGAGAATGGTTTGGTACCCATTGTTGAGCCTGAGATCCTTGTTGACGGACCCCACTCCATTGACAAGTGTGCTGATGTGACTGAGCGCGTCCTTGCTGCATGTTACAAGGCTCTCAATGACCACCACGTCCTTCTTGAAGGAACTCTCTTGAAGCCCAACATGGTGACTCCCGGATCTGATGCCAAGAAGGTTTCACCAGAAGTGATTGCTGAGTACACGGTCCGTGCCTTGCAGCGCACTACCCCTGCAGCCGTCCCTGCTGTGGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCTACTCTCAACCTTAACGCCATGAACAAGCTCAAGGGAAAGAAGCCATGGACTCTTTCCTTCTCCTTCGGCCGTGCTCTTCAAGCCAGCACTCTCAAGGCTTGGTCAGGAAAGAAAGAAAATGTTAAGGCTGCACAGGAGGCTCTCTCACAAGGGCCAAGGCCAACTCAGAGGCAACCTTGGGAACCTACAAGGGTGATGCCAAGCTCGGAGAGGGCGCTGCAGAGAGCCTTCACGTCAAGGACTACAAGTACTGAAGAAGTTTAG

Protein Analysis

361

Amino Acids

39.12

Weight (kDa)

8.45

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycolytic PF00274 11 - 324 5.4e-163 Fructose-bisphosphate aldolase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
Acc65I GGTACC 1 cut(s) 535
AccB1I GGYRCC 5 cut(s) 101, 338, 380, 410, 535
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 2 cut(s) 159, 609
AciI CCGC 2 cut(s) 183, 385
AclI AACGTT 1 cut(s) 115
AclWI GGATC 3 cut(s) 211, 550, 703
AcoI YGGCCR 1 cut(s) 889
AfaI GTAC 5 cut(s) 203, 398, 537, 737, 1072
AfiI CCNNNNNNNGG 4 cut(s) 71, 226, 367, 784
AgsI TTSAA 6 cut(s) 146, 280, 474, 659, 673, 902
AjiI CACGTC 2 cut(s) 649, 1056
AjnI CCWGG 4 cut(s) 64, 298, 360, 519
AluBI AGCT 9 cut(s) 34, 83, 172, 251, 331, 407, 469, 850, 1026
AluI AGCT 9 cut(s) 34, 83, 172, 251, 331, 407, 469, 850, 1026
Alw21I GWGCWC 4 cut(s) 36, 174, 441, 898
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 3 cut(s) 211, 550, 703
AoxI GGCC 4 cut(s) 373, 889, 974, 980
ApeKI GCWGC 9 cut(s) 47, 83, 251, 387, 617, 754, 770, 950, 1039
Asp718I GGTACC 1 cut(s) 535
AspLEI GCGC 6 cut(s) 159, 161, 392, 609, 759, 1039
AspS9I GGNCC 4 cut(s) 449, 569, 742, 974
AsuC2I CCSGG 2 cut(s) 415, 693
AsuHPI GGTGA 4 cut(s) 172, 697, 708, 1027
AvaII GGWCC 3 cut(s) 449, 569, 742
BaeGI GKGCMC 2 cut(s) 385, 415
BanI GGYRCC 5 cut(s) 101, 338, 380, 410, 535
BanII GRGCYC 2 cut(s) 36, 174
Bbv12I GWGCWC 4 cut(s) 36, 174, 441, 898
BbvI GCAGC 9 cut(s) 34, 70, 238, 374, 604, 766, 782, 937, 1026
BccI CCATC 2 cut(s) 365, 469
BceAI ACGGC 2 cut(s) 758, 876
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 4 cut(s) 66, 300, 362, 521
BcnI CCSGG 2 cut(s) 415, 693
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 3 cut(s) 252, 768, 1040
BfoI RGCGCY 1 cut(s) 1040
BisI GCNGC 9 cut(s) 48, 84, 252, 388, 618, 755, 771, 951, 1040
BlsI GCNGC 9 cut(s) 49, 85, 253, 389, 619, 756, 772, 952, 1041
BmcAI AGTACT 2 cut(s) 398, 1072
Bme1390I CCNGG 6 cut(s) 66, 300, 362, 415, 521, 693
Bme18I GGWCC 3 cut(s) 449, 569, 742
BmgBI CACGTC 2 cut(s) 649, 1056
BmgT120I GGNCC 4 cut(s) 449, 569, 742, 974
BmiI GGNNCC 8 cut(s) 103, 340, 382, 412, 451, 537, 571, 1005
BmrFI CCNGG 6 cut(s) 66, 300, 362, 415, 521, 693
BmsI GCATC 3 cut(s) 135, 691, 1008
BplI GAGNNNNNCTC 4 cut(s) 204, 236, 950, 982
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 3 cut(s) 425, 836, 899
BpuMI CCSGG 2 cut(s) 415, 693
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 6 cut(s) 360, 361, 376, 866, 977, 998
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 226, 367, 784
Bse1I ACTGG 2 cut(s) 103, 199
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 4 cut(s) 66, 300, 362, 521
BseDI CCNNGG 6 cut(s) 360, 361, 376, 866, 977, 998
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 4 cut(s) 71, 226, 367, 784
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 5 cut(s) 479, 543, 594, 723, 1001
BseNI ACTGG 2 cut(s) 103, 199
BsePI GCGCGC 1 cut(s) 157
BseRI GAGGAG 3 cut(s) 164, 827, 830
BseSI GKGCMC 2 cut(s) 385, 415
BseX3I CGGCCG 1 cut(s) 889
BseXI GCAGC 9 cut(s) 34, 70, 238, 374, 604, 766, 782, 937, 1026
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 2 cut(s) 159, 609
Bsh1285I CGRYCG 1 cut(s) 892
BshFI GGCC 4 cut(s) 375, 891, 976, 982
BshNI GGYRCC 5 cut(s) 101, 338, 380, 410, 535
BsiEI CGRYCG 1 cut(s) 892
BsiHKAI GWGCWC 4 cut(s) 36, 174, 441, 898
BsiSI CCGG 2 cut(s) 415, 693
BslFI GGGAC 2 cut(s) 435, 761
BslI CCNNNNNNNGG 4 cut(s) 71, 226, 367, 784
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 435, 761
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 4 cut(s) 375, 891, 976, 982
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 6 cut(s) 36, 174, 385, 415, 441, 898
Bsp143I GATC 3 cut(s) 216, 555, 695
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 2 cut(s) 183, 385
BspANI GGCC 4 cut(s) 375, 891, 976, 982
BspCNI CTCAG 5 cut(s) 478, 544, 595, 724, 1000
BspFNI CGCG 2 cut(s) 159, 609
BspLI GGNNCC 8 cut(s) 103, 340, 382, 412, 451, 537, 571, 1005
BspMAI CTGCAG 3 cut(s) 256, 772, 1044
BspPI GGATC 3 cut(s) 211, 550, 703
BspQI GCTCTTC 2 cut(s) 168, 903
BspT107I GGYRCC 5 cut(s) 101, 338, 380, 410, 535
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 2 cut(s) 103, 199
BssECI CCNNGG 6 cut(s) 360, 361, 376, 866, 977, 998
BssHII GCGCGC 1 cut(s) 157
BssMI GATC 3 cut(s) 216, 555, 695
BssT1I CCWWGG 4 cut(s) 376, 866, 977, 998
Bst2UI CCWGG 4 cut(s) 66, 300, 362, 521
Bst4CI ACNGT 2 cut(s) 347, 742
Bst6I CTCTTC 4 cut(s) 141, 168, 182, 903
BstC8I GCNNGC 6 cut(s) 159, 256, 260, 385, 432, 907
BstDEI CTNAG 6 cut(s) 206, 465, 552, 603, 732, 987
BstDSI CCRYGG 1 cut(s) 866
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 2 cut(s) 159, 609
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 6 cut(s) 159, 161, 392, 609, 759, 1039
BstKTI GATC 3 cut(s) 219, 558, 698
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 216, 555, 695
BstMCI CGRYCG 1 cut(s) 892
BstMWI GCNNNNNNNGC 9 cut(s) 47, 389, 419, 436, 466, 506, 779, 902, 959
BstNI CCWGG 4 cut(s) 66, 300, 362, 521
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 6 cut(s) 64, 298, 360, 413, 519, 691
BstSFI CTRYAG 3 cut(s) 252, 768, 1040
BstSLI GKGCMC 2 cut(s) 385, 415
BstUI CGCG 2 cut(s) 159, 609
BstV1I GCAGC 9 cut(s) 34, 70, 238, 374, 604, 766, 782, 937, 1026
BstX2I RGATCY 2 cut(s) 555, 695
BstXI CCANNNNNNTGG 2 cut(s) 496, 527
BstYI RGATCY 2 cut(s) 555, 695
BstZI CGGCCG 1 cut(s) 889
BsuRI GGCC 4 cut(s) 375, 891, 976, 982
BtgI CCRYGG 1 cut(s) 866
BtrI CACGTC 2 cut(s) 649, 1056
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 6 cut(s) 159, 256, 260, 385, 432, 907
CfoI GCGC 6 cut(s) 159, 161, 392, 609, 759, 1039
Cfr13I GGNCC 4 cut(s) 449, 569, 742, 974
CpoI CGGWCCG 1 cut(s) 742
CseI GACGC 1 cut(s) 598
Csp6I GTAC 5 cut(s) 202, 397, 536, 736, 1071
CspI CGGWCCG 1 cut(s) 742
CviAII CATG 4 cut(s) 621, 682, 841, 867
CviQI GTAC 5 cut(s) 202, 397, 536, 736, 1071
DdeI CTNAG 6 cut(s) 206, 465, 552, 603, 732, 987
DpnI GATC 3 cut(s) 218, 557, 697
DpnII GATC 3 cut(s) 216, 555, 695
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 889
EagI CGGCCG 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 141, 168, 182, 903
EarI CTCTTC 4 cut(s) 141, 168, 182, 903
Ecl136II GAGCTC 2 cut(s) 34, 172
EclXI CGGCCG 1 cut(s) 889
Eco130I CCWWGG 4 cut(s) 376, 866, 977, 998
Eco24I GRGCYC 2 cut(s) 36, 174
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 449, 569, 742
Eco52I CGGCCG 1 cut(s) 889
Eco53kI GAGCTC 2 cut(s) 34, 172
EcoICRI GAGCTC 2 cut(s) 34, 172
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 4 cut(s) 64, 298, 360, 519
EcoT14I CCWWGG 4 cut(s) 376, 866, 977, 998
EcoT38I GRGCYC 2 cut(s) 36, 174
ErhI CCWWGG 4 cut(s) 376, 866, 977, 998
FaeI CATG 4 cut(s) 624, 685, 844, 870
FaiI YATR 6 cut(s) 402, 507, 622, 683, 842, 868
FaqI GGGAC 2 cut(s) 435, 761
FatI CATG 4 cut(s) 620, 681, 840, 866
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 9 cut(s) 48, 84, 252, 388, 618, 755, 771, 951, 1040
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 2 cut(s) 36, 174
Fsp4HI GCNGC 9 cut(s) 48, 84, 252, 388, 618, 755, 771, 951, 1040
FspBI CTAG 1 cut(s) 80
GlaI GCGC 6 cut(s) 158, 160, 391, 608, 758, 1038
GluI GCNGC 9 cut(s) 48, 84, 252, 388, 618, 755, 771, 951, 1040
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 375, 891, 976, 982
HapII CCGG 2 cut(s) 415, 693
HgaI GACGC 1 cut(s) 598
HhaI GCGC 6 cut(s) 159, 161, 392, 609, 759, 1039
Hin1II CATG 4 cut(s) 624, 685, 844, 870
Hin6I GCGC 6 cut(s) 157, 159, 390, 607, 757, 1037
HinP1I GCGC 6 cut(s) 157, 159, 390, 607, 757, 1037
HincII GTYRAC 2 cut(s) 313, 565
HindII GTYRAC 2 cut(s) 313, 565
HinfI GANTC 3 cut(s) 92, 688, 871
HpaII CCGG 2 cut(s) 415, 693
HphI GGTGA 4 cut(s) 172, 697, 708, 1027
Hpy166II GTNNAC 5 cut(s) 96, 313, 565, 738, 803
Hpy188I TCNGA 3 cut(s) 700, 990, 1030
Hpy188III TCNNGA 6 cut(s) 167, 277, 442, 656, 670, 927
Hpy8I GTNNAC 5 cut(s) 96, 313, 565, 738, 803
HpyAV CCTTC 8 cut(s) 274, 278, 653, 662, 703, 889, 895, 1060
HpyCH4III ACNGT 2 cut(s) 347, 742
HpyCH4IV ACGT 3 cut(s) 115, 648, 1055
HpyCH4V TGCA 6 cut(s) 254, 620, 754, 770, 953, 1042
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 389, 419, 436, 466, 506, 779, 902, 959
HpyF3I CTNAG 6 cut(s) 206, 465, 552, 603, 732, 987
HpySE526I ACGT 3 cut(s) 115, 648, 1055
Hsp92II CATG 4 cut(s) 624, 685, 844, 870
HspAI GCGC 6 cut(s) 157, 159, 390, 607, 757, 1037
KpnI GGTACC 1 cut(s) 539
Kzo9I GATC 3 cut(s) 216, 555, 695
LguI GCTCTTC 2 cut(s) 168, 903
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 9 cut(s) 34, 70, 238, 374, 604, 766, 782, 937, 1026
LweI GCATC 3 cut(s) 135, 691, 1008
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 115, 648, 1055
MaeIII GTNAC 3 cut(s) 598, 623, 685
MalI GATC 3 cut(s) 218, 557, 697
MboI GATC 3 cut(s) 216, 555, 695
MboII GAAGA 5 cut(s) 155, 158, 169, 287, 890
MflI RGATCY 2 cut(s) 555, 695
MhlI GDGCHC 6 cut(s) 36, 174, 385, 415, 441, 898
MlyI GAGTC 3 cut(s) 101, 682, 865
MseI TTAA 3 cut(s) 333, 834, 945
MspA1I CMGCKG 2 cut(s) 251, 387
MspI CCGG 2 cut(s) 415, 693
MspR9I CCNGG 6 cut(s) 66, 300, 362, 415, 521, 693
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 4 cut(s) 66, 300, 362, 521
MvnI CGCG 2 cut(s) 159, 609
MwoI GCNNNNNNNGC 9 cut(s) 47, 389, 419, 436, 466, 506, 779, 902, 959
NciI CCSGG 2 cut(s) 415, 693
NcoI CCATGG 1 cut(s) 866
NdeII GATC 3 cut(s) 216, 555, 695
NlaIII CATG 4 cut(s) 624, 685, 844, 870
NlaIV GGNNCC 8 cut(s) 103, 340, 382, 412, 451, 537, 571, 1005
NmuCI GTSAC 2 cut(s) 598, 685
NspI RCATGY 1 cut(s) 624
PasI CCCWGGG 1 cut(s) 361
PauI GCGCGC 1 cut(s) 157
PciSI GCTCTTC 2 cut(s) 168, 903
PctI GAATGC 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 367
PfoI TCCNGGA 2 cut(s) 64, 691
PkrI GCNGC 9 cut(s) 49, 85, 253, 389, 619, 756, 772, 952, 1041
PleI GAGTC 3 cut(s) 100, 682, 865
PpsI GAGTC 3 cut(s) 100, 682, 865
Psp124BI GAGCTC 2 cut(s) 36, 174
Psp1406I AACGTT 1 cut(s) 115
Psp6I CCWGG 4 cut(s) 64, 298, 360, 519
PspGI CCWGG 4 cut(s) 64, 298, 360, 519
PspN4I GGNNCC 8 cut(s) 103, 340, 382, 412, 451, 537, 571, 1005
PspPI GGNCC 4 cut(s) 449, 569, 742, 974
PstI CTGCAG 3 cut(s) 256, 772, 1044
PsuI RGATCY 2 cut(s) 555, 695
PteI GCGCGC 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 5 cut(s) 203, 398, 537, 737, 1072
RsaNI GTAC 5 cut(s) 202, 397, 536, 736, 1071
Rsr2I CGGWCCG 1 cut(s) 742
RsrII CGGWCCG 1 cut(s) 742
SacI GAGCTC 2 cut(s) 36, 174
SapI GCTCTTC 2 cut(s) 168, 903
SaqAI TTAA 3 cut(s) 333, 834, 945
SatI GCNGC 9 cut(s) 48, 84, 252, 388, 618, 755, 771, 951, 1040
Sau3AI GATC 3 cut(s) 216, 555, 695
Sau96I GGNCC 4 cut(s) 449, 569, 742, 974
ScaI AGTACT 2 cut(s) 398, 1072
SchI GAGTC 3 cut(s) 101, 682, 865
ScrFI CCNGG 6 cut(s) 66, 300, 362, 415, 521, 693
SduI GDGCHC 6 cut(s) 36, 174, 385, 415, 441, 898
SfaNI GCATC 3 cut(s) 135, 691, 1008
SfcI CTRYAG 3 cut(s) 252, 768, 1040
SinI GGWCC 3 cut(s) 449, 569, 742
SmlI CTYRAG 3 cut(s) 440, 851, 914
SmoI CTYRAG 3 cut(s) 440, 851, 914
SsiI CCGC 2 cut(s) 183, 385
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 2 cut(s) 36, 174
StyD4I CCNGG 6 cut(s) 64, 298, 360, 413, 519, 691
StyI CCWWGG 4 cut(s) 376, 866, 977, 998
TaaI ACNGT 2 cut(s) 347, 742
TaiI ACGT 3 cut(s) 118, 651, 1058
TatI WGTACW 3 cut(s) 396, 735, 1070
Tru1I TTAA 3 cut(s) 333, 834, 945
Tru9I TTAA 3 cut(s) 333, 834, 945
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 598, 685
TseI GCWGC 9 cut(s) 47, 83, 251, 387, 617, 754, 770, 950, 1039
Tsp45I GTSAC 2 cut(s) 598, 685
TspDTI ATGAA 2 cut(s) 417, 857
TspGWI ACGGA 2 cut(s) 582, 734
TspRI CASTG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 3 cut(s) 449, 569, 742
XagI CCTNNNNNAGG 1 cut(s) 224
XceI RCATGY 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 2 cut(s) 206, 368
XspI CTAG 1 cut(s) 80
ZrmI AGTACT 2 cut(s) 398, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.