Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001206

Physical Location & Seq

Genomic Coordinates Reverse (-)

31677883 .. 31680029

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACAGCCTTCAAGGGAAAGTACCATGGCAAGCCATTCGTTGAGGTTTTGAAGGAAGGTGGTGTTCTTCCTGGCATTAAGGTTGACAAGGGCGTTGTTGAGCTTGCTGGTACCAATGGTGAGACCACAACCCAGGGTCTGGATGGCCTGGGCGCACGCTGCGCAAAGTACTATGAAGCTGGTGCCCGGTTTGCCAAATGGCGTGCTGTGCTCAAGATTGGTCCCAATGAGCCATCACAGCTGTCCATCAACGAGAATGCTAATGGATTGGCTCGTTATGCTATCATCTGCCAGGAGAATGGCTTGGTGCCCATTGTTGAGCCTGAGATCCTTGTTGATGGACCCCATGACATCAACAAGTGTGCTGATGTGACTGAGCGCGTCCTTGCTGCATGTTACAAGGCTCTCAATGACCACCATGTCCTTCTTGAAGGAACTCTCTTGAAGCCCAACATGGTGACTCCCGGATCTGATGCCAAGAAGGCTTCACCAGAAGTGATTGCTGAGTACACAGTTCGTGCCTTGCAGCGCACTACCCCCGCAGCTGTCCCCGCTGTGATGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCTACTCTCAACCTTAACGCCATGAACAAGCTCAAGGGAAAGAAGCCATGGACTCTTTCCTTCTCCTTCGGCCGTGCTCTTCAAGCCAGCACTCTCAAGGCTTGGTCAGGAAAGAAAGAAAATGTTAAGGCTGCACAGGAGGCTCTCCTCACAAGGGCCAAGGCCAACTCAGAGGCAACCTTGGGAACCTACAAGGGCGATGCCAAGCTCGGTGAGGGTGCTGCAGAGTCTCTTCATGTCAAGGACTACAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Glycolytic

Protein Analysis

282

Amino Acids

30.2

Weight (kDa)

8.85

Isoelectric Point (pI)

20.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycolytic	PF00274	2 - 282	6.6e-139	Fructose-bisphosphate aldolase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36460 AT2G36460 AT2G36460 AT3G52930 AT5G03690 AT5G03690 AT5G03690 AT5G03690
fragaria_vesca	FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980 FvH4_6g17980
malus_domestica	MD11G1158300.v1.1 MD12G1018700.v1.1 MD12G1018800.v1.1 MD14G1016700.v1.1 MD14G1016800.v1.1 MD17G1158400.v1.1
prunus_persica	Prupe.7G116500_v2.0.a1 Prupe.7G116600_v2.0.a1
pyrus_communis	pycom11g12860 pycom12g01550 pycom12g01560 pycom14g01430 pycom14g01440
rosa_chinensis	RchiOBHm_Chr3g0472251 RchiOBHm_Chr3g0472261
rosa_laevigata	RLG00000024095 RLG00000024096
rosa_multiflora	Rmu_co8224482.1_g000001 Rmu_sc0008192.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409130 Rroxscaffold_6G00409140
rosa_rugosa	Rorug03G0123100 Rorug03G0123100 Rorug03G0123200 Rorug03G0123200 Rorug03G0123300
rosa_samantha	Rh3AG175500 Rh3AG175600 Rh3BG201000 Rh3BG201100 Rh3CG192200 Rh3CG192300 Rh3CG199400 Rh3CG199500 Rh3DG173900 Rh3DG174000
rosa_wichuraiana	Rw3G016560 Rw3G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
Acc16I	TGCGCA	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	3 cut(s)	110, 182, 307
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	540, 552
AclWI	GGATC	2 cut(s)	322, 475
AcoI	YGGCCR	1 cut(s)	661
AfaI	GTAC	4 cut(s)	23, 112, 170, 509
AfiI	CCNNNNNNNGG	2 cut(s)	139, 745
AgsI	TTSAA	5 cut(s)	13, 52, 431, 445, 674
AjnI	CCWGG	4 cut(s)	70, 132, 147, 291
AluBI	AGCT	6 cut(s)	103, 179, 241, 545, 622, 799
AluI	AGCT	6 cut(s)	103, 179, 241, 545, 622, 799
Alw21I	GWGCWC	2 cut(s)	213, 670
Alw26I	GTCTC	2 cut(s)	116, 825
AlwI	GGATC	2 cut(s)	322, 475
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	145, 661, 747, 753
ApeKI	GCWGC	6 cut(s)	159, 389, 526, 542, 722, 812
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	4 cut(s)	155, 164, 381, 531
AspS9I	GGNCC	3 cut(s)	221, 341, 747
AsuC2I	CCSGG	2 cut(s)	187, 465
AsuHPI	GGTGA	4 cut(s)	131, 469, 480, 815
AvaII	GGWCC	2 cut(s)	221, 341
BaeGI	GKGCMC	2 cut(s)	187, 312
BanI	GGYRCC	3 cut(s)	110, 182, 307
Bbv12I	GWGCWC	2 cut(s)	213, 670
BbvI	GCAGC	6 cut(s)	146, 376, 538, 554, 709, 799
BccI	CCATC	4 cut(s)	137, 241, 254, 332
BceAI	ACGGC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	4 cut(s)	72, 134, 149, 293
BcnI	CCSGG	2 cut(s)	187, 465
BcoDI	GTCTC	2 cut(s)	116, 825
BfmI	CTRYAG	1 cut(s)	813
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	6 cut(s)	160, 390, 527, 543, 723, 813
BlsI	GCNGC	6 cut(s)	161, 391, 528, 544, 724, 814
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	6 cut(s)	72, 134, 149, 187, 293, 465
Bme18I	GGWCC	2 cut(s)	221, 341
BmgT120I	GGNCC	3 cut(s)	221, 341, 747
BmiI	GGNNCC	6 cut(s)	112, 184, 223, 309, 343, 778
BmrFI	CCNGG	6 cut(s)	72, 134, 149, 187, 293, 465
BmsI	GCATC	2 cut(s)	463, 781
BpuEI	CTTGAG	3 cut(s)	197, 608, 671
BpuMI	CCSGG	2 cut(s)	187, 465
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	7 cut(s)	25, 132, 133, 148, 638, 750, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 745
BseBI	CCWGG	4 cut(s)	72, 134, 149, 293
BseDI	CCNNGG	7 cut(s)	25, 132, 133, 148, 638, 750, 771
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	139, 745
BseMII	CTCAG	4 cut(s)	315, 366, 495, 774
BseRI	GAGGAG	3 cut(s)	599, 602, 728
BseSI	GKGCMC	2 cut(s)	187, 312
BseX3I	CGGCCG	1 cut(s)	661
BseXI	GCAGC	6 cut(s)	146, 376, 538, 554, 709, 799
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	664
BshFI	GGCC	4 cut(s)	147, 663, 749, 755
BshNI	GGYRCC	3 cut(s)	110, 182, 307
BsiEI	CGRYCG	1 cut(s)	664
BsiHKAI	GWGCWC	2 cut(s)	213, 670
BsiSI	CCGG	2 cut(s)	187, 465
BslFI	GGGAC	2 cut(s)	207, 533
BslI	CCNNNNNNNGG	2 cut(s)	139, 745
BsmAI	GTCTC	2 cut(s)	116, 825
BsmFI	GGGAC	2 cut(s)	207, 533
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	147, 663, 749, 755
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	4 cut(s)	187, 213, 312, 670
Bsp143I	GATC	2 cut(s)	327, 467
Bsp19I	CCATGG	2 cut(s)	25, 638
BspACI	CCGC	2 cut(s)	540, 552
BspANI	GGCC	4 cut(s)	147, 663, 749, 755
BspCNI	CTCAG	4 cut(s)	316, 367, 496, 773
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	6 cut(s)	112, 184, 223, 309, 343, 778
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	2 cut(s)	322, 475
BspQI	GCTCTTC	1 cut(s)	675
BspT107I	GGYRCC	3 cut(s)	110, 182, 307
BspTNI	GGTCTC	1 cut(s)	116
BssECI	CCNNGG	7 cut(s)	25, 132, 133, 148, 638, 750, 771
BssMI	GATC	2 cut(s)	327, 467
BssT1I	CCWWGG	4 cut(s)	25, 638, 750, 771
Bst2UI	CCWGG	4 cut(s)	72, 134, 149, 293
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	675, 828
BstC8I	GCNNGC	5 cut(s)	32, 105, 157, 204, 679
BstDEI	CTNAG	4 cut(s)	324, 375, 504, 760
BstDSI	CCRYGG	2 cut(s)	25, 638
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	4 cut(s)	155, 164, 381, 531
BstKTI	GATC	2 cut(s)	330, 470
BstMAI	GTCTC	2 cut(s)	116, 825
BstMBI	GATC	2 cut(s)	327, 467
BstMCI	CGRYCG	1 cut(s)	664
BstNI	CCWGG	4 cut(s)	72, 134, 149, 293
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	6 cut(s)	70, 132, 147, 185, 291, 463
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	2 cut(s)	187, 312
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	6 cut(s)	146, 376, 538, 554, 709, 799
BstX2I	RGATCY	2 cut(s)	327, 467
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	2 cut(s)	327, 467
BstZI	CGGCCG	1 cut(s)	661
BsuRI	GGCC	4 cut(s)	147, 663, 749, 755
BtgI	CCRYGG	2 cut(s)	25, 638
BtgZI	GCGATG	1 cut(s)	804
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	5 cut(s)	32, 105, 157, 204, 679
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	4 cut(s)	155, 164, 381, 531
Cfr13I	GGNCC	3 cut(s)	221, 341, 747
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	4 cut(s)	22, 111, 169, 508
CviAII	CATG	8 cut(s)	26, 347, 393, 419, 454, 613, 639, 827
CviQI	GTAC	4 cut(s)	22, 111, 169, 508
DdeI	CTNAG	4 cut(s)	324, 375, 504, 760
DpnI	GATC	2 cut(s)	329, 469
DpnII	GATC	2 cut(s)	327, 467
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	661
EagI	CGGCCG	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	675, 828
EarI	CTCTTC	2 cut(s)	675, 828
EclXI	CGGCCG	1 cut(s)	661
Eco130I	CCWWGG	4 cut(s)	25, 638, 750, 771
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	221, 341
Eco52I	CGGCCG	1 cut(s)	661
EcoRII	CCWGG	4 cut(s)	70, 132, 147, 291
EcoT14I	CCWWGG	4 cut(s)	25, 638, 750, 771
ErhI	CCWWGG	4 cut(s)	25, 638, 750, 771
FaeI	CATG	8 cut(s)	29, 350, 396, 422, 457, 616, 642, 830
FaqI	GGGAC	2 cut(s)	207, 533
FatI	CATG	8 cut(s)	25, 346, 392, 418, 453, 612, 638, 826
FauI	CCCGC	2 cut(s)	547, 559
Fnu4HI	GCNGC	6 cut(s)	160, 390, 527, 543, 723, 813
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	6 cut(s)	160, 390, 527, 543, 723, 813
FspI	TGCGCA	1 cut(s)	163
GlaI	GCGC	4 cut(s)	154, 163, 380, 530
GluI	GCNGC	6 cut(s)	160, 390, 527, 543, 723, 813
HaeIII	GGCC	4 cut(s)	147, 663, 749, 755
HapII	CCGG	2 cut(s)	187, 465
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	4 cut(s)	155, 164, 381, 531
Hin1II	CATG	8 cut(s)	29, 350, 396, 422, 457, 616, 642, 830
Hin6I	GCGC	4 cut(s)	153, 162, 379, 529
HinP1I	GCGC	4 cut(s)	153, 162, 379, 529
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	460, 643, 818
HpaII	CCGG	2 cut(s)	187, 465
HphI	GGTGA	4 cut(s)	131, 469, 480, 815
Hpy166II	GTNNAC	3 cut(s)	85, 510, 575
Hpy188I	TCNGA	2 cut(s)	472, 763
Hpy188III	TCNNGA	5 cut(s)	140, 214, 428, 442, 699
Hpy8I	GTNNAC	3 cut(s)	85, 510, 575
HpyAV	CCTTC	8 cut(s)	19, 46, 50, 425, 434, 475, 661, 667
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	392, 526, 725, 815
HpyF3I	CTNAG	4 cut(s)	324, 375, 504, 760
Hsp92II	CATG	8 cut(s)	29, 350, 396, 422, 457, 616, 642, 830
HspAI	GCGC	4 cut(s)	153, 162, 379, 529
KpnI	GGTACC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	327, 467
LguI	GCTCTTC	1 cut(s)	675
Lsp1109I	GCAGC	6 cut(s)	146, 376, 538, 554, 709, 799
LweI	GCATC	2 cut(s)	463, 781
MaeIII	GTNAC	3 cut(s)	370, 395, 457
MalI	GATC	2 cut(s)	329, 469
MboI	GATC	2 cut(s)	327, 467
MboII	GAAGA	3 cut(s)	59, 662, 815
MflI	RGATCY	2 cut(s)	327, 467
MhlI	GDGCHC	4 cut(s)	187, 213, 312, 670
MlyI	GAGTC	3 cut(s)	454, 637, 827
MnlI	CCTC	8 cut(s)	37, 577, 580, 583, 724, 749, 757, 799
MseI	TTAA	3 cut(s)	78, 606, 717
MspA1I	CMGCKG	3 cut(s)	241, 545, 554
MspI	CCGG	2 cut(s)	187, 465
MspR9I	CCNGG	6 cut(s)	72, 134, 149, 187, 293, 465
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	4 cut(s)	72, 134, 149, 293
MvnI	CGCG	1 cut(s)	381
NciI	CCSGG	2 cut(s)	187, 465
NcoI	CCATGG	2 cut(s)	25, 638
NdeII	GATC	2 cut(s)	327, 467
NlaIII	CATG	8 cut(s)	29, 350, 396, 422, 457, 616, 642, 830
NlaIV	GGNNCC	6 cut(s)	112, 184, 223, 309, 343, 778
NmuCI	GTSAC	2 cut(s)	370, 457
NsbI	TGCGCA	1 cut(s)	163
NspI	RCATGY	1 cut(s)	396
PasI	CCCWGGG	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	675
PctI	GAATGC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	6 cut(s)	161, 391, 528, 544, 724, 814
PleI	GAGTC	3 cut(s)	454, 637, 826
PpsI	GAGTC	3 cut(s)	454, 637, 826
Psp6I	CCWGG	4 cut(s)	70, 132, 147, 291
PspGI	CCWGG	4 cut(s)	70, 132, 147, 291
PspN4I	GGNNCC	6 cut(s)	112, 184, 223, 309, 343, 778
PspPI	GGNCC	3 cut(s)	221, 341, 747
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	327, 467
PvuII	CAGCTG	2 cut(s)	241, 545
RsaI	GTAC	4 cut(s)	23, 112, 170, 509
RsaNI	GTAC	4 cut(s)	22, 111, 169, 508
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	78, 606, 717
SatI	GCNGC	6 cut(s)	160, 390, 527, 543, 723, 813
Sau3AI	GATC	2 cut(s)	327, 467
Sau96I	GGNCC	3 cut(s)	221, 341, 747
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	3 cut(s)	454, 637, 827
ScrFI	CCNGG	6 cut(s)	72, 134, 149, 187, 293, 465
SduI	GDGCHC	4 cut(s)	187, 213, 312, 670
SfaNI	GCATC	2 cut(s)	463, 781
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	2 cut(s)	221, 341
SmlI	CTYRAG	3 cut(s)	212, 623, 686
SmoI	CTYRAG	3 cut(s)	212, 623, 686
SsiI	CCGC	2 cut(s)	540, 552
StyD4I	CCNGG	6 cut(s)	70, 132, 147, 185, 291, 463
StyI	CCWWGG	4 cut(s)	25, 638, 750, 771
TaaI	ACNGT	1 cut(s)	514
TatI	WGTACW	2 cut(s)	168, 507
Tru1I	TTAA	3 cut(s)	78, 606, 717
Tru9I	TTAA	3 cut(s)	78, 606, 717
TseFI	GTSAC	2 cut(s)	370, 457
TseI	GCWGC	6 cut(s)	159, 389, 526, 542, 722, 812
Tsp45I	GTSAC	2 cut(s)	370, 457
TspDTI	ATGAA	3 cut(s)	189, 629, 815
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	221, 341
XceI	RCATGY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.