Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8263269.1

Orthogroup ID

OG0005865

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 628

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8263269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

atggcttcccttgcccaaaacaacagcaggctttccatagccatggagcgaactggccaatggattttctctcaagatatccctgcagatgtagtagtcgaagttggcgaagccaatttctccttacacaagttcatgctagtggccaagagcaaccggattaggcaactgatattggaatcggacgaaccagacctgacccgaatcgacctctccaacattcctggaggaccggagacgttcgagaaggcagccaagttctgctacggcgtcaacttcgaaatcacagtccacaacgtagctgctctccgatgcgccgccgagtacctccaaatgaccgataagtattgcgagaacaaccttaccggccgtacagaagatttcctcactcaggtggccttgtccagcctctccggcgccattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

4.85

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30520 AT2G30520 AT2G30520
fragaria_vesca	FvH4_3g40860 FvH4_3g40860 FvH4_3g40860 FvH4_3g40860
malus_domestica	MD03G1048900.v1.1 MD11G1051400.v1.1
prunus_persica	Prupe.6G039200_v2.0.a1 Prupe.6G039200_v2.0.a1
pyrus_communis	pycom03g03840 pycom11g04120
rosa_chinensis	RchiOBHm_Chr5g0073591
rosa_laevigata	RLG00000036398
rosa_multiflora	Rmu_co8263269.1_g000001 Rmu_co8430755.1_g000001 Rmu_sc0042142.1_g000002 Rmu_ssc0000242.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007670
rosa_rugosa	Rorug05G0425200 Rorug05G0425300 Rorug05G0425400
rosa_samantha	Rh5AG482200 Rh5BG503000 Rh5CG526100 Rh5DG515200
rosa_wichuraiana	Rw5G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	3 cut(s)	55, 144, 367
AcyI	GRCGYC	2 cut(s)	270, 417
AfaI	GTAC	2 cut(s)	326, 373
AfiI	CCNNNNNNNGG	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	230
AoxI	GGCC	4 cut(s)	55, 144, 367, 396
ApeKI	GCWGC	2 cut(s)	251, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspLEI	GCGC	2 cut(s)	317, 419
AspS9I	GGNCC	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	2 cut(s)	57, 146
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	263, 289
BceAI	ACGGC	2 cut(s)	283, 354
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	252, 303, 318
BlsI	GCNGC	3 cut(s)	253, 304, 319
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	270, 417
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	2 cut(s)	156, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	58
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	263, 289
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	4 cut(s)	57, 146, 369, 398
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	370
BsiSI	CCGG	4 cut(s)	157, 233, 366, 414
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	57, 146, 369, 398
Bsp119I	TTCGAA	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	4 cut(s)	57, 146, 369, 398
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	42
BssNI	GRCGYC	2 cut(s)	270, 417
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	2 cut(s)	270, 417
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	2 cut(s)	317, 419
BstMAI	GTCTC	1 cut(s)	230
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 414
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	263, 289
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	367
BsuRI	GGCC	4 cut(s)	57, 146, 369, 398
BtgI	CCRYGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	2 cut(s)	317, 419
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	325, 372
CviAII	CATG	2 cut(s)	43, 136
CviQI	GTAC	2 cut(s)	325, 372
DdeI	CTNAG	1 cut(s)	390
DinI	GGCGCC	1 cut(s)	418
EaeI	YGGCCR	3 cut(s)	55, 144, 367
EagI	CGGCCG	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	42
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	46, 139
FaiI	YATR	3 cut(s)	38, 44, 137
FatI	CATG	2 cut(s)	42, 135
Fnu4HI	GCNGC	3 cut(s)	252, 303, 318
Fsp4HI	GCNGC	3 cut(s)	252, 303, 318
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	316, 418
GluI	GCNGC	3 cut(s)	252, 303, 318
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	57, 146, 369, 398
HapII	CCGG	4 cut(s)	157, 233, 366, 414
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	2 cut(s)	317, 419
Hin1I	GRCGYC	2 cut(s)	270, 417
Hin1II	CATG	2 cut(s)	46, 139
Hin6I	GCGC	2 cut(s)	315, 417
HinP1I	GCGC	2 cut(s)	315, 417
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	179, 204
HpaII	CCGG	4 cut(s)	157, 233, 366, 414
Hpy166II	GTNNAC	2 cut(s)	274, 292
Hpy188I	TCNGA	2 cut(s)	184, 311
Hpy188III	TCNNGA	2 cut(s)	74, 244
Hpy8I	GTNNAC	2 cut(s)	274, 292
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	239, 297
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 414
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	239, 297
Hsp92I	GRCGYC	2 cut(s)	270, 417
Hsp92II	CATG	2 cut(s)	46, 139
HspAI	GCGC	2 cut(s)	315, 417
KasI	GGCGCC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	263, 289
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	239, 297
MboII	GAAGA	1 cut(s)	389
MlsI	TGGCCA	2 cut(s)	57, 146
MluCI	AATT	1 cut(s)	115
MluNI	TGGCCA	2 cut(s)	57, 146
Mly113I	GGCGCC	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	221, 221, 338, 395, 419
Mox20I	TGGCCA	2 cut(s)	57, 146
MscI	TGGCCA	2 cut(s)	57, 146
MslI	CAYNNNNRTG	3 cut(s)	41, 140, 392
Msp20I	TGGCCA	2 cut(s)	57, 146
MspI	CCGG	4 cut(s)	157, 233, 366, 414
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	11, 414
NarI	GGCGCC	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	2 cut(s)	46, 139
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	179, 204
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	253, 304, 319
PluTI	GGCGCC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	326, 373
RsaNI	GTAC	2 cut(s)	325, 372
RseI	CAYNNNNRTG	3 cut(s)	41, 140, 392
SatI	GCNGC	3 cut(s)	252, 303, 318
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	8 cut(s)	198, 213, 242, 300, 304, 330, 363, 396
SfaNI	GCATC	1 cut(s)	302
SfcI	CTRYAG	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	3 cut(s)	41, 140, 392
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	318
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	242, 300
TaqI	TCGA	4 cut(s)	99, 207, 243, 279
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	179, 204
TseI	GCWGC	2 cut(s)	251, 302
TspDTI	ATGAA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.