Rmu_co8430755.1_g000001

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8430755.1
Physical Location & Seq
Reverse (-)
2 .. 1373
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8430755.1_g000001.1.cds

Sequence Viewer

Length: 986 bp
atgaaacaacgtgcttcgaagactctgaccgtatcgagtgcgatcgttacatacgccgagagatggctccgggatctgatccgggaccactccggagccggcaccaagtccttggagtccgacgactccgacatcagaatccggcagcgggagcttatacaatccatagtggctctccttccttccgagaaggcagctctgccgatcaacttcatctgctgccttctcaggtcagcgacgtttgtcaaggcctcgacggcgaccaagaacgagctagagaagtggatctcggcgatcttggagcacgtaaccgtcgacgacctgctggtcctgtcgtttagttacgacggcgagaggctgttcgatctggagagcgtgaggaggattatctcgggattcgtggagagggagaagagcgtggcggtttttaacgccggtgacttcagggaggtgtgctctgctgcaatgctcagagttgctaagactgtggatgcgtatctcggcgagatagccacttgtactgagcttagcatatccaagtttaatggcatcgccgtcctcatccccaaaggcgcgcgtaaagtcgacgacgatctctatcgtgccgttgatatttacttgaagtctcatccgaaccttgatgagatagagagggagaaagtgtgcagtgtaatggatgcgttgaagttatcatacgaagcgagattacatgcttcgcaaaataagcgtttgcctgtacagattgtgctgcatgcgctctatttcgaccagctcaagctgaggagcggtgaagacgagaacgacatgcaaatggatgctgtatcgaccagaaatcaggtacaggccgacgtgtcgttggctaaggagaatgaggcactgcgaacagagctgttgaagatgaagatgtacatttcggacataaaaaagactggaagtggtgtaggtgcaagtgcagcaacgacgtcgtctgggaaaggcggtgggcc

Protein Analysis

329

Amino Acids

36.42

Weight (kDa)

6.56

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 1 cut(s) 965
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 786
AccI GTMKAC 2 cut(s) 315, 585
AccII CGCG 2 cut(s) 575, 577
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 4 cut(s) 148, 422, 786, 978
AclWI GGATC 3 cut(s) 73, 81, 293
AcuI CTGAAG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 962
AfaI GTAC 4 cut(s) 520, 738, 840, 908
AfiI CCNNNNNNNGG 2 cut(s) 63, 148
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 3 cut(s) 622, 685, 895
AjiI CACGTC 1 cut(s) 850
AluBI AGCT 7 cut(s) 154, 197, 274, 526, 772, 778, 889
AluI AGCT 7 cut(s) 154, 197, 274, 526, 772, 778, 889
Alw21I GWGCWC 2 cut(s) 306, 458
Alw26I GTCTC 1 cut(s) 630
AlwI GGATC 3 cut(s) 73, 81, 293
Ama87I CYCGRG 1 cut(s) 391
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 2 cut(s) 249, 843
ApeKI GCWGC 6 cut(s) 145, 194, 219, 461, 748, 953
AspLEI GCGC 3 cut(s) 575, 577, 757
AspS9I GGNCC 3 cut(s) 85, 328, 983
AsuC2I CCSGG 2 cut(s) 71, 83
AsuHPI GGTGA 2 cut(s) 449, 800
AsuII TTCGAA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 2 cut(s) 85, 328
BanI GGYRCC 1 cut(s) 101
BarI GAAGNNNNNNTAC 4 cut(s) 677, 690, 709, 722
BbsI GAAGAC 2 cut(s) 26, 798
Bbv12I GWGCWC 2 cut(s) 306, 458
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 6 cut(s) 157, 206, 206, 448, 735, 965
BccI CCATC 1 cut(s) 57
BceAI ACGGC 4 cut(s) 273, 364, 539, 590
BcgI CGANNNNNNTGC 2 cut(s) 945, 979
BcnI CCSGG 2 cut(s) 71, 83
BcoDI GTCTC 1 cut(s) 630
BfaI CTAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 6 cut(s) 146, 195, 220, 462, 749, 954
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 6 cut(s) 147, 196, 221, 463, 750, 955
Bme1390I CCNGG 2 cut(s) 71, 83
Bme18I GGWCC 2 cut(s) 85, 328
BmeT110I CYCGRG 1 cut(s) 391
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 3 cut(s) 85, 328, 983
BmiI GGNNCC 4 cut(s) 68, 86, 97, 103
BmrFI CCNGG 2 cut(s) 71, 83
BmsI GCATC 4 cut(s) 481, 558, 667, 805
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 2 cut(s) 26, 798
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 2 cut(s) 779, 861
Bpu1102I GCTNAGC 1 cut(s) 527
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 2 cut(s) 71, 83
BsaAI YACGTR 1 cut(s) 307
BsaBI GATNNNNATC 2 cut(s) 495, 597
BsaHI GRCGYC 1 cut(s) 962
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 148
Bse118I RCCGGY 2 cut(s) 98, 434
Bse1I ACTGG 1 cut(s) 934
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 2 cut(s) 495, 597
BseAI TCCGGA 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 5 cut(s) 496, 561, 628, 682, 820
BseJI GATNNNNATC 2 cut(s) 495, 597
BseLI CCNNNNNNNGG 2 cut(s) 63, 148
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 241, 484, 513, 770
BseNI ACTGG 1 cut(s) 934
BsePI GCGCGC 1 cut(s) 573
BseRI GAGGAG 2 cut(s) 394, 796
BseXI GCAGC 6 cut(s) 157, 206, 206, 448, 735, 965
BsgI GTGCAG 2 cut(s) 685, 972
Bsh1236I CGCG 2 cut(s) 575, 577
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 251, 845, 985
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 306, 458
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 6 cut(s) 70, 82, 93, 99, 142, 435
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 63, 148
BsmAI GTCTC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 251, 845, 985
BsoBI CYCGRG 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 306, 458
Bsp13I TCCGGA 1 cut(s) 92
Bsp1407I TGTACA 2 cut(s) 736, 906
Bsp143I GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
Bsp1720I GCTNAGC 1 cut(s) 527
BspACI CCGC 4 cut(s) 148, 422, 786, 978
BspANI GGCC 3 cut(s) 251, 845, 985
BspCNI CTCAG 4 cut(s) 240, 483, 514, 771
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 2 cut(s) 575, 577
BspLI GGNNCC 4 cut(s) 68, 86, 97, 103
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 3 cut(s) 73, 81, 293
BspQI GCTCTTC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 786
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 2 cut(s) 98, 434
BsrGI TGTACA 2 cut(s) 736, 906
BsrI ACTGG 1 cut(s) 934
BssAI RCCGGY 2 cut(s) 98, 434
BssECI CCNNGG 1 cut(s) 111
BssHII GCGCGC 1 cut(s) 573
BssMI GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
BssNI GRCGYC 1 cut(s) 962
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 31, 313, 487
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 962
BstAUI TGTACA 2 cut(s) 736, 906
BstBAI YACGTR 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 100, 575, 753
BstDEI CTNAG 7 cut(s) 227, 470, 480, 522, 527, 779, 861
BstF5I GGATG 5 cut(s) 496, 561, 628, 682, 820
BstFNI CGCG 2 cut(s) 575, 577
BstHHI GCGC 3 cut(s) 575, 577, 757
BstKTI GATC 8 cut(s) 45, 76, 81, 207, 288, 297, 367, 595
BstMAI GTCTC 1 cut(s) 630
BstMBI GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 6 cut(s) 151, 257, 724, 754, 886, 953
BstNSI RCATGY 3 cut(s) 713, 755, 808
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 69, 81
BstUI CGCG 2 cut(s) 575, 577
BstV1I GCAGC 6 cut(s) 157, 206, 206, 448, 735, 965
BstV2I GAAGAC 2 cut(s) 26, 798
BstX2I RGATCY 2 cut(s) 73, 285
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 2 cut(s) 73, 285
BsuRI GGCC 3 cut(s) 251, 845, 985
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 5 cut(s) 496, 561, 628, 682, 820
BtsI GCAGTG 2 cut(s) 673, 875
BtsIMutI CAGTG 2 cut(s) 673, 875
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 100, 575, 753
CfoI GCGC 3 cut(s) 575, 577, 757
Cfr10I RCCGGY 2 cut(s) 98, 434
Cfr13I GGNCC 3 cut(s) 85, 328, 983
Csp6I GTAC 4 cut(s) 519, 737, 839, 907
CviAII CATG 3 cut(s) 710, 752, 805
CviQI GTAC 4 cut(s) 519, 737, 839, 907
DdeI CTNAG 7 cut(s) 227, 470, 480, 522, 527, 779, 861
DpnI GATC 8 cut(s) 44, 75, 80, 206, 287, 296, 366, 594
DpnII GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 85, 328
Eco57I CTGAAG 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 713, 755, 808
FaiI YATR 9 cut(s) 52, 158, 167, 533, 694, 711, 753, 806, 920
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 709, 751, 804
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 2 cut(s) 315, 585
Fnu4HI GCNGC 6 cut(s) 146, 195, 220, 462, 749, 954
FokI GGATG 5 cut(s) 503, 548, 615, 689, 827
Fsp4HI GCNGC 6 cut(s) 146, 195, 220, 462, 749, 954
FspBI CTAG 1 cut(s) 275
GlaI GCGC 3 cut(s) 574, 576, 756
GluI GCNGC 6 cut(s) 146, 195, 220, 462, 749, 954
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 3 cut(s) 251, 845, 985
HapII CCGG 6 cut(s) 70, 82, 93, 99, 142, 435
HhaI GCGC 3 cut(s) 575, 577, 757
Hin1I GRCGYC 1 cut(s) 962
Hin1II CATG 3 cut(s) 713, 755, 808
Hin6I GCGC 3 cut(s) 573, 575, 755
HinP1I GCGC 3 cut(s) 573, 575, 755
HincII GTYRAC 2 cut(s) 316, 586
HindII GTYRAC 2 cut(s) 316, 586
HinfI GANTC 5 cut(s) 22, 116, 125, 138, 396
HpaII CCGG 6 cut(s) 70, 82, 93, 99, 142, 435
HphI GGTGA 2 cut(s) 449, 800
Hpy166II GTNNAC 2 cut(s) 316, 586
Hpy188I TCNGA 9 cut(s) 27, 78, 121, 130, 137, 187, 473, 633, 916
Hpy188III TCNNGA 3 cut(s) 93, 368, 393
Hpy8I GTNNAC 2 cut(s) 316, 586
HpyAV CCTTC 4 cut(s) 184, 188, 192, 233
HpyCH4III ACNGT 3 cut(s) 31, 313, 487
HpyCH4IV ACGT 5 cut(s) 10, 239, 306, 849, 962
HpyCH4V TGCA 6 cut(s) 464, 666, 751, 808, 947, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 151, 257, 724, 754, 886, 953
HpyF3I CTNAG 7 cut(s) 227, 470, 480, 522, 527, 779, 861
HpySE526I ACGT 5 cut(s) 10, 239, 306, 849, 962
Hsp92I GRCGYC 1 cut(s) 962
Hsp92II CATG 3 cut(s) 713, 755, 808
HspAI GCGC 3 cut(s) 573, 575, 755
Kpn2I TCCGGA 1 cut(s) 92
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 5 cut(s) 72, 95, 151, 301, 783
Lsp1109I GCAGC 6 cut(s) 157, 206, 206, 448, 735, 965
LweI GCATC 4 cut(s) 481, 558, 667, 805
MaeI CTAG 1 cut(s) 275
MaeII ACGT 5 cut(s) 10, 239, 306, 849, 962
MaeIII GTNAC 4 cut(s) 46, 307, 341, 437
MalI GATC 8 cut(s) 44, 75, 80, 206, 287, 296, 366, 594
MbiI CCGCTC 1 cut(s) 786
MboI GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
MboII GAAGA 5 cut(s) 31, 424, 803, 907, 913
MflI RGATCY 2 cut(s) 73, 285
MhlI GDGCHC 2 cut(s) 306, 458
MlyI GAGTC 3 cut(s) 16, 119, 125
MmeI TCCRAC 2 cut(s) 144, 153
MroI TCCGGA 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 2 cut(s) 429, 543
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 6 cut(s) 70, 82, 93, 99, 142, 435
MspR9I CCNGG 2 cut(s) 71, 83
MvnI CGCG 2 cut(s) 575, 577
MwoI GCNNNNNNNGC 6 cut(s) 151, 257, 724, 754, 886, 953
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 2 cut(s) 71, 83
NdeII GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 713, 755, 808
NlaIV GGNNCC 4 cut(s) 68, 86, 97, 103
NmeAIII GCCGAG 3 cut(s) 82, 269, 480
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 3 cut(s) 713, 755, 808
NspV TTCGAA 1 cut(s) 17
PaeI GCATGC 1 cut(s) 755
PauI GCGCGC 1 cut(s) 573
PceI AGGCCT 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 138, 396
PflFI GACNNNGTC 1 cut(s) 964
PfoI TCCNGGA 2 cut(s) 69, 81
PkrI GCNGC 6 cut(s) 147, 196, 221, 463, 750, 955
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 3 cut(s) 16, 119, 124
PpsI GAGTC 3 cut(s) 16, 119, 124
Ppu21I YACGTR 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 242
PspN4I GGNNCC 4 cut(s) 68, 86, 97, 103
PspPI GGNCC 3 cut(s) 85, 328, 983
PsuI RGATCY 2 cut(s) 73, 285
PsyI GACNNNGTC 1 cut(s) 964
PteI GCGCGC 1 cut(s) 573
PvuI CGATCG 1 cut(s) 45
RsaI GTAC 4 cut(s) 520, 738, 840, 908
RsaNI GTAC 4 cut(s) 519, 737, 839, 907
RseI CAYNNNNRTG 1 cut(s) 809
SalI GTCGAC 2 cut(s) 314, 584
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 429, 543
SatI GCNGC 6 cut(s) 146, 195, 220, 462, 749, 954
Sau3AI GATC 8 cut(s) 42, 73, 78, 204, 285, 294, 364, 592
Sau96I GGNCC 3 cut(s) 85, 328, 983
SchI GAGTC 3 cut(s) 16, 119, 125
ScrFI CCNGG 2 cut(s) 71, 83
SduI GDGCHC 2 cut(s) 306, 458
SfaNI GCATC 4 cut(s) 481, 558, 667, 805
SfuI TTCGAA 1 cut(s) 17
SgrAI CRCCGGYG 1 cut(s) 434
SgrDI CGTCGACG 1 cut(s) 314
SinI GGWCC 2 cut(s) 85, 328
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 755
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 4 cut(s) 148, 422, 786, 978
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 69, 81
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 31, 313, 487
TaiI ACGT 5 cut(s) 13, 242, 309, 852, 965
TaqI TCGA 8 cut(s) 17, 35, 254, 315, 363, 585, 765, 824
TatI WGTACW 3 cut(s) 518, 736, 906
TfiI GAWTC 2 cut(s) 138, 396
Tru1I TTAA 2 cut(s) 429, 543
Tru9I TTAA 2 cut(s) 429, 543
TscAI CASTG 2 cut(s) 673, 882
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 6 cut(s) 145, 194, 219, 461, 748, 953
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 17, 202, 914
TspRI CASTG 2 cut(s) 673, 882
Tth111I GACNNNGTC 1 cut(s) 964
VpaK11BI GGWCC 2 cut(s) 85, 328
XceI RCATGY 3 cut(s) 713, 755, 808
XmiI GTMKAC 2 cut(s) 315, 585
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.