Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005865

Physical Location & Seq

Genomic Coordinates Reverse (-)

59076285 .. 59078203

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0425400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGTAATTTTAACAAAGGTTATAATGGGATCGATGGCAAAGGCTGAAGGAATAAACCAAGATAGGATCACACAATTACCAGATGACATTGTTTCCCACATATTCTCCTTCCTTCCTACAGTAGATGCTGTCAGGAACACCCTTTTGTCGAAAAAATTTAACCAAGTGTGGACGAAGCTTAAAACTCTAGACTTCGACAGTGAAAGGGAATTTCGGAAGTGTAGAGGTGGAAATGCTTTTCTAACGTTTGTATCTCGTGTGCTCTACTTTCGTGATGGATCAGAGATACGTACATTCCGTCTAAAACTGTCTCGTAAACGTTATTTACCATGTGTTGGGGATTGGATTTGCACTGCTGTTAAGCGTAAAGTAGTTGAGCTTGATCTCCATCTAAACTTTGATGTATGGACTGATTTCGAGTTGCCTCCGTGCATTTTTTGGTGCAAAACACTTGAGGTTTTGAAACTGAATCTGTCGCCTTGGGAGGTCACCTGTGATATTCCTACATCAGGCTGTTTCCCAATTCTCAAGTTCCTCCATGTTACAGTGTTTAATCCTTCCATCCGGGAAATGGAGAAGCTTTTGTCTCACTTCCCTGTACTTGAAGAGTTGACTATAGATGGAACTGGTGAAGATCTTGATGACTTTGGTACTTGCAGTTTCCAGGTCTCTGCACCGAAACTGAAGACGTTGAGAATAAGTTTGGAATCCCTATCTGAGCCTGTCGATATTCATGTAAATGCCCCACAGCTTGAAAGCCTTGATCTCCAGCGGCTTGGTTTAACTAATTGTTTTCTTGATGGGAGTGCAAACTCCCTAGTCAATGCCAGTATTGCTTTCAGAGAAAAATTTGAAATAAAAGGACCGTTTGATCTTTCCAACTCTACAATGGAGCTTCTGAATCAAGTCTCTGATGTCAAATCTCTATCTGTTTCGGCTCATTGCTTGGAGGATTTGCATCTCCCTGAGAATTACTATCTCCCTTCTTTTGGTAATGTGAACCAATTGAGGCTGGCTTTTGGGAATCACAGTTGCTGGGAATTGCTAGCTCGGTTTCTCAACAGTGCACCTAATCTTGAAATTCTTGTCTTAGACGATAGAACTGAAGGTCACAAAGAACTGTCAGAGATTCACTGGAATCCACCAGAGCAAGTGCCTAGTAGTTTATTATCAAACCTGAAGACCATCTGCTTTAAGGGGTTCAAGGGAAGGCTGTTTGAGATGGAAATGATAAAGTATCTGTTGAAGAATGGTCAACTGTTGAATAAGATGACGATTTCTACAGGCCTGCATCTTTCATATGATAGACAGAACGAGTTATACACAGAGTTTATGATGTTCCATAGGACAGCAACTTGTCATGTTGAGTTCATGCACATGGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

462

Amino Acids

52.99

Weight (kDa)

5.9

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 61	2.7e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	91 - 430	1.9e-09	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	114 - 362	5e-13	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	382 - 426	3.1e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30520 AT2G30520 AT2G30520
fragaria_vesca	FvH4_3g40860 FvH4_3g40860 FvH4_3g40860 FvH4_3g40860
malus_domestica	MD03G1048900.v1.1 MD11G1051400.v1.1
prunus_persica	Prupe.6G039200_v2.0.a1 Prupe.6G039200_v2.0.a1
pyrus_communis	pycom03g03840 pycom11g04120
rosa_chinensis	RchiOBHm_Chr5g0073591
rosa_laevigata	RLG00000036398
rosa_multiflora	Rmu_co8263269.1_g000001 Rmu_co8430755.1_g000001 Rmu_sc0042142.1_g000002 Rmu_ssc0000242.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007670
rosa_rugosa	Rorug05G0425200 Rorug05G0425300 Rorug05G0425400
rosa_samantha	Rh5AG482200 Rh5BG503000 Rh5CG526100 Rh5DG515200
rosa_wichuraiana	Rw5G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	1 cut(s)	772
AclI	AACGTT	2 cut(s)	245, 319
AclWI	GGATC	3 cut(s)	37, 74, 286
AcsI	RAATTY	4 cut(s)	155, 209, 848, 1080
AcuI	CTGAAG	4 cut(s)	66, 704, 1125, 1199
AfaI	GTAC	3 cut(s)	292, 600, 652
AfiI	CCNNNNNNNGG	4 cut(s)	335, 509, 571, 989
AgsI	TTSAA	8 cut(s)	463, 605, 755, 854, 1079, 1204, 1246, 1264
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	6 cut(s)	178, 379, 580, 751, 895, 1049
AluI	AGCT	6 cut(s)	178, 379, 580, 751, 895, 1049
Alw21I	GWGCWC	2 cut(s)	264, 1069
Alw26I	GTCTC	4 cut(s)	315, 591, 673, 913
Alw44I	GTGCAC	1 cut(s)	1065
AlwI	GGATC	3 cut(s)	37, 74, 286
AlwNI	CAGNNNCTG	1 cut(s)	1035
AoxI	GGCC	1 cut(s)	1285
ApaLI	GTGCAC	1 cut(s)	1065
ApoI	RAATTY	4 cut(s)	155, 209, 848, 1080
AspS9I	GGNCC	1 cut(s)	863
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	481, 641
AsuNHI	GCTAGC	1 cut(s)	1045
AvaII	GGWCC	1 cut(s)	863
BaeGI	GKGCMC	1 cut(s)	1069
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	692, 1187
Bbv12I	GWGCWC	2 cut(s)	264, 1069
BccI	CCATC	8 cut(s)	28, 269, 396, 569, 614, 794, 1193, 1216
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	4 cut(s)	315, 591, 673, 913
BfaI	CTAG	4 cut(s)	188, 818, 1046, 1158
BfmI	CTRYAG	3 cut(s)	117, 615, 1281
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	1 cut(s)	773
BlsI	GCNGC	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	566, 665
Bme18I	GGWCC	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	863
BmrFI	CCNGG	2 cut(s)	566, 665
BmsI	GCATC	3 cut(s)	115, 967, 1300
BmtI	GCTAGC	1 cut(s)	1049
BpiI	GAAGAC	2 cut(s)	692, 1187
BpmI	CTGGAG	1 cut(s)	752
BpuEI	CTTGAG	2 cut(s)	473, 512
BpuMI	CCSGG	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	290
BsaBI	GATNNNNATC	2 cut(s)	387, 957
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	335, 509, 571, 989
Bse1I	ACTGG	3 cut(s)	631, 828, 1139
Bse3DI	GCAATG	1 cut(s)	940
Bse8I	GATNNNNATC	2 cut(s)	387, 957
BseBI	CCWGG	1 cut(s)	665
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	561
BseJI	GATNNNNATC	2 cut(s)	387, 957
BseLI	CCNNNNNNNGG	4 cut(s)	335, 509, 571, 989
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	2 cut(s)	708, 957
BseNI	ACTGG	3 cut(s)	631, 828, 1139
BseSI	GKGCMC	1 cut(s)	1069
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	1 cut(s)	1287
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	264, 1069
BsiSI	CCGG	1 cut(s)	565
BslI	CCNNNNNNNGG	4 cut(s)	335, 509, 571, 989
BsmAI	GTCTC	4 cut(s)	315, 591, 673, 913
BsnI	GGCC	1 cut(s)	1287
Bso31I	GGTCTC	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	264, 1069
Bsp143I	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	1 cut(s)	1287
BspCNI	CTCAG	2 cut(s)	709, 958
BspDI	ATCGAT	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	1049
BspPI	GGATC	3 cut(s)	37, 74, 286
BspTNI	GGTCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	940
BsrI	ACTGG	3 cut(s)	631, 828, 1139
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	9 cut(s)	121, 200, 309, 547, 867, 1031, 1064, 1122, 1260
Bst6I	CTCTTC	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	1014, 1047, 1289
BstDEI	CTNAG	3 cut(s)	717, 966, 1090
BstEII	GGTNACC	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	561
BstKTI	GATC	7 cut(s)	32, 69, 281, 385, 637, 766, 874
BstMAI	GTCTC	4 cut(s)	315, 591, 673, 913
BstMBI	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNI	CCWGG	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	564, 663
BstSFI	CTRYAG	3 cut(s)	117, 615, 1281
BstSLI	GKGCMC	1 cut(s)	1069
BstSNI	TACGTA	1 cut(s)	290
BstV2I	GAAGAC	2 cut(s)	692, 1187
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	1287
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	5 cut(s)	205, 351, 552, 1069, 1132
Cac8I	GCNNGC	3 cut(s)	1014, 1047, 1289
CaiI	CAGNNNCTG	1 cut(s)	1035
Cfr13I	GGNCC	1 cut(s)	863
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	291, 599, 651
CviAII	CATG	6 cut(s)	330, 539, 734, 1361, 1372, 1378
CviQI	GTAC	3 cut(s)	291, 599, 651
DdeI	CTNAG	3 cut(s)	717, 966, 1090
DpnI	GATC	7 cut(s)	31, 68, 280, 384, 636, 765, 873
DpnII	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco105I	TACGTA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	479
Eco147I	AGGCCT	1 cut(s)	1287
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	4 cut(s)	66, 704, 1125, 1199
Eco91I	GGTNACC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoO65I	GGTNACC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	6 cut(s)	333, 542, 737, 1364, 1375, 1381
FatI	CATG	6 cut(s)	329, 538, 733, 1360, 1371, 1377
FauNDI	CATATG	1 cut(s)	1300
Fnu4HI	GCNGC	1 cut(s)	773
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	773
FspBI	CTAG	4 cut(s)	188, 818, 1046, 1158
GluI	GCNGC	1 cut(s)	773
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	1 cut(s)	1287
HapII	CCGG	1 cut(s)	565
Hin1II	CATG	6 cut(s)	333, 542, 737, 1364, 1375, 1381
HincII	GTYRAC	2 cut(s)	612, 1256
HindII	GTYRAC	2 cut(s)	612, 1256
HindIII	AAGCTT	2 cut(s)	176, 578
HinfI	GANTC	6 cut(s)	469, 707, 901, 1024, 1129, 1138
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	2 cut(s)	481, 641
Hpy166II	GTNNAC	6 cut(s)	171, 317, 612, 1000, 1067, 1256
Hpy188I	TCNGA	7 cut(s)	216, 283, 718, 842, 900, 913, 1126
Hpy188III	TCNNGA	6 cut(s)	133, 188, 272, 638, 797, 1076
Hpy8I	GTNNAC	6 cut(s)	171, 317, 612, 1000, 1067, 1256
HpyAV	CCTTC	7 cut(s)	41, 118, 122, 567, 993, 1100, 1203
HpyCH4III	ACNGT	9 cut(s)	121, 200, 309, 547, 867, 1031, 1064, 1122, 1260
HpyCH4IV	ACGT	4 cut(s)	245, 289, 319, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	3 cut(s)	717, 966, 1090
HpySE526I	ACGT	4 cut(s)	245, 289, 319, 689
Hsp92II	CATG	6 cut(s)	333, 542, 737, 1364, 1375, 1381
Kzo9I	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
LmnI	GCTCC	1 cut(s)	892
LweI	GCATC	3 cut(s)	115, 967, 1300
MaeI	CTAG	4 cut(s)	188, 818, 1046, 1158
MaeII	ACGT	4 cut(s)	245, 289, 319, 689
MaeIII	GTNAC	3 cut(s)	487, 541, 1109
MalI	GATC	7 cut(s)	31, 68, 280, 384, 636, 765, 873
MboI	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
MboII	GAAGA	5 cut(s)	617, 644, 697, 1192, 1258
MfeI	CAATTG	1 cut(s)	1004
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	264, 1069
MmeI	TCCRAC	1 cut(s)	903
MnlI	CCTC	7 cut(s)	218, 435, 448, 478, 545, 943, 1002
MseI	TTAA	7 cut(s)	11, 159, 180, 360, 552, 782, 1194
MslI	CAYNNNNRTG	2 cut(s)	738, 1376
MspA1I	CMGCKG	1 cut(s)	772
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	566, 665
MunI	CAATTG	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	1 cut(s)	833
NciI	CCSGG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	1300
NdeII	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
NheI	GCTAGC	1 cut(s)	1045
NlaIII	CATG	6 cut(s)	333, 542, 737, 1364, 1375, 1381
NmuCI	GTSAC	2 cut(s)	487, 1109
PceI	AGGCCT	1 cut(s)	1287
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	6 cut(s)	469, 707, 901, 1024, 1129, 1138
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	774
Ppu21I	YACGTR	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	23
Psp1406I	AACGTT	2 cut(s)	245, 319
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	1 cut(s)	663
PspPI	GGNCC	1 cut(s)	863
PsrI	GAACNNNNNNTAC	2 cut(s)	1304, 1336
PstNI	CAGNNNCTG	1 cut(s)	1035
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	3 cut(s)	292, 600, 652
RsaNI	GTAC	3 cut(s)	291, 599, 651
RseI	CAYNNNNRTG	2 cut(s)	738, 1376
SaqAI	TTAA	7 cut(s)	11, 159, 180, 360, 552, 782, 1194
SatI	GCNGC	1 cut(s)	773
Sau3AI	GATC	7 cut(s)	29, 66, 278, 382, 634, 763, 871
Sau96I	GGNCC	1 cut(s)	863
ScrFI	CCNGG	2 cut(s)	566, 665
SduI	GDGCHC	2 cut(s)	264, 1069
SfaNI	GCATC	3 cut(s)	115, 967, 1300
SfcI	CTRYAG	3 cut(s)	117, 615, 1281
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	2 cut(s)	738, 1376
SmlI	CTYRAG	2 cut(s)	452, 527
SmoI	CTYRAG	2 cut(s)	452, 527
SnaBI	TACGTA	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	1287
SsiI	CCGC	1 cut(s)	772
SspMI	CTAG	4 cut(s)	188, 818, 1046, 1158
StuI	AGGCCT	1 cut(s)	1287
StyD4I	CCNGG	2 cut(s)	564, 663
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	9 cut(s)	121, 200, 309, 547, 867, 1031, 1064, 1122, 1260
TaiI	ACGT	4 cut(s)	248, 292, 322, 692
TaqI	TCGA	5 cut(s)	32, 149, 195, 417, 726
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	1 cut(s)	775
TfiI	GAWTC	6 cut(s)	469, 707, 901, 1024, 1129, 1138
Tru1I	TTAA	7 cut(s)	11, 159, 180, 360, 552, 782, 1194
Tru9I	TTAA	7 cut(s)	11, 159, 180, 360, 552, 782, 1194
TscAI	CASTG	5 cut(s)	205, 358, 552, 1069, 1139
TseFI	GTSAC	2 cut(s)	487, 1109
Tsp45I	GTSAC	2 cut(s)	487, 1109
TspDTI	ATGAA	3 cut(s)	722, 1287, 1360
TspGWI	ACGGA	2 cut(s)	287, 417
TspRI	CASTG	5 cut(s)	205, 358, 552, 1069, 1139
Van91I	CCANNNNNTGG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	1065
VpaK11BI	GGWCC	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	4 cut(s)	155, 209, 848, 1080
XbaI	TCTAGA	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	568, 886
XspI	CTAG	4 cut(s)	188, 818, 1046, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.