Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005865

Physical Location & Seq

Genomic Coordinates Reverse (-)

80145602 .. 80148463

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG515200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGTTTCACCGTGCCTATATAGTTAAGAAATTCAATTCTTATGATGATGATCTTGCATGTGCTTTATTTTACAGGATTTTCTCTCAAGATATCCCTGCAGATGTAGTAGTCGAAGTTGGCGAAGCCAATTTCTCCTTACACAAGTTCATGCTAGTGGCCAAGAGCAACCGGATTAGGCAACTGATATTGGAATCGGACGAACCAGACCTGACCCGAATCGACCTCTCCAACATTCCTGGAGGACCGGAGACGTTCGAGAAGGCAGCCAAGTTCTGCTACGGCGTCAACTTCGAAATCACAGTCCACAACGTAGCTGCTCTCCGATGCGCCGCCGAGTACCTCCAAATGACCGATAAGTACTGCGATAACAACCTTACCGGCCGTACAGAAGATTTCCTCACTCAGGTGGCCTTGTCCAGCCTCTCCGGCGCCATTGTCGTTCTCAAATCATGCGAAGACCTCACTCCCTTCGCTGAAGAACTCAAAATCGTTCAGAGATGTGTGGAAGTAGTCACTTCCAAGGTTACAATCGAGGCAAACTTTCCGAGCCGGTCTCCGACGAACTGGTGGACGGAGGAGCTATCAATTTTGGACATTGATTTCTTTGGGAGAGTAATAACATCCATGAAACAACGTGCTTCGAAAACTCTGACCGTATCGAGTGCGATCGTTACATACGCAGAGAGATGGCTCCGGGATCTGATCCGGGACCACTCCGGCGCCGGCACCAAGTCCTTGGAGTCCGACGACTCCGACATCAGAATCCGGCAGCGGGAGCTTATACAATCCATAGTGGCTCTCCTTCCTTCCGAGAAGGCCGCTCTGCCGATCAACTTCATCTGCTGCCTTCTCAGATCAGCGACGTTCGTCAAGGCCTCGACGGCGACCAAGAACGAGCTAGAGAAGCGGATCTCGGCGATCTTGGAGCACGTAACCGTCAACGACCTGCTGGTCCTGTCGTTTAGTTACGACGGCGAGAGGCTGTTCGATCTGGAGAGCGTGAGGAGGATTATCTCGGGATTCGTGGAGAGGGAGAAGAACGTGGCGGTTTTTAACGCCGGTGACTTCAGGGAGGTGTGCTCCGCTGCAATGCTCAGAGTTGCTAAGACTGTGGATGCGTATCTCGGCGAGATAGCCACTTGTACTGAGCTTAGCATATCCAAGTTTAATGGCATCGCCGTCCTCATCCCCAAAGGCGCGCGTAAAGTCGACGACGACCTCTATCGTGCCGTTGATATTTACTTGAAGGCTCATCCGAACCTTGATGAGATAGAGAGGGAGAAAGTGTGCAGTGTAATGGATGCATTGAAGTTGTCATACGAAGCGAGATTGCATGCTTCGCAAAATAAGCGTTTGCCTGTACAGATTGTGCTGCATGCGCTCTATTTCGACCAGCTCAAGCTGAGGAGCGGTGAAGACGAGGACGACATGCAAATGGATGCTGTATCGACCAGAAATCAGGTACAGGCCGACGTGTCGTTGGCTAAGGAGAATGAGGCACTGCGAACAGAGCTGTTGAAGATGAAGATGTACATTTCGGACATAAAAAAGACTGGAAGTGGTGTAGGTGCAAGTGCAGCAACGACGTCGTCTGGGAAAGGAGGTGGGCCTAGAAAGCCGACGTTTTTCTCGTCGGTGTCGAAGAAACTGGGAAAGTTGAATCCGTTCAAAAATGGGTCTAAGGACACCTTGAACATTGATGATTGTGTGGACGTTACCAAGCCTAGAAGAAGAAGGTTTTCCATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

583

Amino Acids

65.16

Weight (kDa)

6.51

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	26 - 118	3.6e-08	BTB/POZ domain
NPH3	PF03000	188 - 442	2.1e-76	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30520 AT2G30520 AT2G30520
fragaria_vesca	FvH4_3g40860 FvH4_3g40860 FvH4_3g40860 FvH4_3g40860
malus_domestica	MD03G1048900.v1.1 MD11G1051400.v1.1
prunus_persica	Prupe.6G039200_v2.0.a1 Prupe.6G039200_v2.0.a1
pyrus_communis	pycom03g03840 pycom11g04120
rosa_chinensis	RchiOBHm_Chr5g0073591
rosa_laevigata	RLG00000036398
rosa_multiflora	Rmu_co8263269.1_g000001 Rmu_co8430755.1_g000001 Rmu_sc0042142.1_g000002 Rmu_ssc0000242.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007670
rosa_rugosa	Rorug05G0425200 Rorug05G0425300 Rorug05G0425400
rosa_samantha	Rh5AG482200 Rh5BG503000 Rh5CG526100 Rh5DG515200
rosa_wichuraiana	Rw5G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	950
AatII	GACGTC	1 cut(s)	1589
Acc36I	ACCTGC	1 cut(s)	954
AccB1I	GGYRCC	3 cut(s)	428, 719, 725
AccBSI	CCGCTC	2 cut(s)	821, 1410
AccI	GTMKAC	1 cut(s)	1209
AccII	CGCG	2 cut(s)	1199, 1201
AciI	CCGC	7 cut(s)	330, 772, 819, 907, 1046, 1083, 1410
AclWI	GGATC	3 cut(s)	697, 705, 917
AcoI	YGGCCR	2 cut(s)	156, 379
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	495, 1051
AcyI	GRCGYC	4 cut(s)	282, 429, 720, 1586
AfaI	GTAC	7 cut(s)	338, 359, 385, 1144, 1362, 1464, 1532
AfiI	CCNNNNNNNGG	2 cut(s)	403, 772
AflIII	ACRYGT	1 cut(s)	1473
AgsI	TTSAA	7 cut(s)	34, 1246, 1309, 1519, 1660, 1669, 1693
AjiI	CACGTC	1 cut(s)	1474
AjnI	CCWGG	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	8 cut(s)	314, 580, 778, 898, 1150, 1396, 1402, 1513
AluI	AGCT	8 cut(s)	314, 580, 778, 898, 1150, 1396, 1402, 1513
Alw21I	GWGCWC	2 cut(s)	930, 1082
Alw26I	GTCTC	2 cut(s)	242, 558
AlwI	GGATC	3 cut(s)	697, 705, 917
Ama87I	CYCGRG	1 cut(s)	1015
AoxI	GGCC	7 cut(s)	156, 379, 408, 816, 873, 1467, 1607
ApeKI	GCWGC	7 cut(s)	263, 314, 769, 843, 1085, 1372, 1577
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
Asp700I	GAANNNNTTC	2 cut(s)	1664, 1738
AspLEI	GCGC	6 cut(s)	329, 431, 722, 1199, 1201, 1381
AspS9I	GGNCC	4 cut(s)	242, 709, 952, 1607
AsuC2I	CCSGG	2 cut(s)	695, 707
AsuHPI	GGTGA	2 cut(s)	1073, 1424
AsuII	TTCGAA	2 cut(s)	291, 641
AvaI	CYCGRG	1 cut(s)	1015
AvaII	GGWCC	3 cut(s)	242, 709, 952
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	3 cut(s)	428, 719, 725
BarI	GAAGNNNNNNTAC	2 cut(s)	1301, 1333
BbsI	GAAGAC	2 cut(s)	462, 1422
Bbv12I	GWGCWC	2 cut(s)	930, 1082
BbvCI	CCTCAGC	1 cut(s)	1403
BbvI	GCAGC	7 cut(s)	275, 301, 781, 830, 1072, 1359, 1589
BccI	CCATC	2 cut(s)	681, 1751
BceAI	ACGGC	6 cut(s)	295, 366, 897, 988, 1163, 1214
BcgI	CGANNNNNNTGC	2 cut(s)	1569, 1603
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	695, 707
BcoDI	GTCTC	2 cut(s)	242, 558
BfaI	CTAG	4 cut(s)	152, 899, 1611, 1725
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	2 cut(s)	432, 723
BfuAI	ACCTGC	1 cut(s)	954
BglI	GCCNNNNNGGC	2 cut(s)	426, 881
BisI	GCNGC	9 cut(s)	264, 315, 330, 770, 819, 844, 1086, 1373, 1578
BlpI	GCTNAGC	1 cut(s)	1151
BlsI	GCNGC	9 cut(s)	265, 316, 331, 771, 820, 845, 1087, 1374, 1579
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	3 cut(s)	237, 695, 707
Bme18I	GGWCC	3 cut(s)	242, 709, 952
BmeT110I	CYCGRG	1 cut(s)	1015
BmgBI	CACGTC	1 cut(s)	1474
BmgT120I	GGNCC	4 cut(s)	242, 709, 952, 1607
BmiI	GGNNCC	5 cut(s)	430, 692, 710, 721, 727
BmrFI	CCNGG	3 cut(s)	237, 695, 707
BmrI	ACTGGG	1 cut(s)	1658
BmsI	GCATC	5 cut(s)	314, 1105, 1182, 1291, 1429
BmuI	ACTGGG	1 cut(s)	1658
BoxI	GACNNNNGTC	1 cut(s)	866
BpiI	GAAGAC	2 cut(s)	462, 1422
BplI	GAGNNNNNCTC	4 cut(s)	538, 570, 1064, 1096
BpmI	CTGGAG	2 cut(s)	258, 1013
Bpu10I	CCTNAGC	2 cut(s)	1403, 1485
Bpu1102I	GCTNAGC	1 cut(s)	1151
Bpu14I	TTCGAA	2 cut(s)	291, 641
BpuEI	CTTGAG	2 cut(s)	69, 1382
BpuMI	CCSGG	2 cut(s)	695, 707
BsaAI	YACGTR	1 cut(s)	931
BsaBI	GATNNNNATC	2 cut(s)	48, 1119
BsaHI	GRCGYC	4 cut(s)	282, 429, 720, 1586
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	519, 735
BsaWI	WCCGGW	2 cut(s)	168, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	1271, 1301
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 772
Bse118I	RCCGGY	4 cut(s)	377, 549, 722, 1058
Bse1I	ACTGG	3 cut(s)	569, 1558, 1653
Bse3DI	GCAATG	1 cut(s)	1095
Bse8I	GATNNNNATC	2 cut(s)	48, 1119
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	519, 735
BseGI	GGATG	6 cut(s)	620, 1120, 1185, 1252, 1306, 1444
BseJI	GATNNNNATC	2 cut(s)	48, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	403, 772
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	5 cut(s)	416, 865, 1108, 1137, 1394
BseNI	ACTGG	3 cut(s)	569, 1558, 1653
BsePI	GCGCGC	1 cut(s)	1197
BseRI	GAGGAG	3 cut(s)	590, 1018, 1420
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	7 cut(s)	275, 301, 781, 830, 1072, 1359, 1589
BsgI	GTGCAG	2 cut(s)	1309, 1596
Bsh1236I	CGCG	2 cut(s)	1199, 1201
Bsh1285I	CGRYCG	2 cut(s)	382, 669
BshFI	GGCC	7 cut(s)	158, 381, 410, 818, 875, 1469, 1609
BshNI	GGYRCC	3 cut(s)	428, 719, 725
BsiEI	CGRYCG	2 cut(s)	382, 669
BsiHKAI	GWGCWC	2 cut(s)	930, 1082
BsiHKCI	CYCGRG	1 cut(s)	1015
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	403, 772
BsmAI	GTCTC	2 cut(s)	242, 558
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	7 cut(s)	158, 381, 410, 818, 875, 1469, 1609
Bso31I	GGTCTC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	1015
Bsp119I	TTCGAA	2 cut(s)	291, 641
Bsp1286I	GDGCHC	2 cut(s)	930, 1082
Bsp1407I	TGTACA	2 cut(s)	1360, 1530
Bsp143I	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
Bsp1720I	GCTNAGC	1 cut(s)	1151
BspACI	CCGC	7 cut(s)	330, 772, 819, 907, 1046, 1083, 1410
BspANI	GGCC	7 cut(s)	158, 381, 410, 818, 875, 1469, 1609
BspCNI	CTCAG	5 cut(s)	415, 864, 1107, 1138, 1395
BspFNI	CGCG	2 cut(s)	1199, 1201
BspLI	GGNNCC	5 cut(s)	430, 692, 710, 721, 727
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	954
BspPI	GGATC	3 cut(s)	697, 705, 917
BspT104I	TTCGAA	2 cut(s)	291, 641
BspT107I	GGYRCC	3 cut(s)	428, 719, 725
BspTNI	GGTCTC	1 cut(s)	558
BsrBI	CCGCTC	2 cut(s)	821, 1410
BsrDI	GCAATG	1 cut(s)	1095
BsrFI	RCCGGY	4 cut(s)	377, 549, 722, 1058
BsrGI	TGTACA	2 cut(s)	1360, 1530
BsrI	ACTGG	3 cut(s)	569, 1558, 1653
BssAI	RCCGGY	4 cut(s)	377, 549, 722, 1058
BssECI	CCNNGG	2 cut(s)	519, 735
BssHII	GCGCGC	1 cut(s)	1197
BssMI	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
BssNI	GRCGYC	4 cut(s)	282, 429, 720, 1586
BssT1I	CCWWGG	2 cut(s)	519, 735
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	5 cut(s)	11, 301, 655, 937, 1111
BstACI	GRCGYC	4 cut(s)	282, 429, 720, 1586
BstAUI	TGTACA	2 cut(s)	1360, 1530
BstBAI	YACGTR	1 cut(s)	931
BstBI	TTCGAA	2 cut(s)	291, 641
BstC8I	GCNNGC	4 cut(s)	724, 1199, 1335, 1377
BstDEI	CTNAG	9 cut(s)	402, 851, 1094, 1104, 1146, 1151, 1403, 1485, 1680
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	6 cut(s)	620, 1120, 1185, 1252, 1306, 1444
BstFNI	CGCG	2 cut(s)	1199, 1201
BstH2I	RGCGCY	2 cut(s)	432, 723
BstHHI	GCGC	6 cut(s)	329, 431, 722, 1199, 1201, 1381
BstKTI	GATC	9 cut(s)	52, 669, 700, 705, 831, 857, 912, 921, 991
BstMAI	GTCTC	2 cut(s)	242, 558
BstMBI	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
BstMCI	CGRYCG	2 cut(s)	382, 669
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	4 cut(s)	60, 1337, 1379, 1432
BstPAI	GACNNNNGTC	1 cut(s)	866
BstSCI	CCNGG	3 cut(s)	235, 693, 705
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	2 cut(s)	1199, 1201
BstV1I	GCAGC	7 cut(s)	275, 301, 781, 830, 1072, 1359, 1589
BstV2I	GAAGAC	2 cut(s)	462, 1422
BstX2I	RGATCY	2 cut(s)	697, 909
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	2 cut(s)	697, 909
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	7 cut(s)	158, 381, 410, 818, 875, 1469, 1609
BtgZI	GCGATG	1 cut(s)	1159
BtrI	CACGTC	1 cut(s)	1474
BtsCI	GGATG	6 cut(s)	620, 1120, 1185, 1252, 1306, 1444
BtsI	GCAGTG	2 cut(s)	1297, 1499
BtsIMutI	CAGTG	2 cut(s)	1297, 1499
BveI	ACCTGC	1 cut(s)	954
Cac8I	GCNNGC	4 cut(s)	724, 1199, 1335, 1377
CfoI	GCGC	6 cut(s)	329, 431, 722, 1199, 1201, 1381
Cfr10I	RCCGGY	4 cut(s)	377, 549, 722, 1058
Cfr13I	GGNCC	4 cut(s)	242, 709, 952, 1607
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	7 cut(s)	337, 358, 384, 1143, 1361, 1463, 1531
CviAII	CATG	7 cut(s)	57, 148, 450, 625, 1334, 1376, 1429
CviQI	GTAC	7 cut(s)	337, 358, 384, 1143, 1361, 1463, 1531
DdeI	CTNAG	9 cut(s)	402, 851, 1094, 1104, 1146, 1151, 1403, 1485, 1680
DinI	GGCGCC	2 cut(s)	430, 721
DpnI	GATC	9 cut(s)	51, 668, 699, 704, 830, 856, 911, 920, 990
DpnII	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
DrdI	GACNNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	950
EaeI	YGGCCR	2 cut(s)	156, 379
EagI	CGGCCG	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	519, 735
Eco147I	AGGCCT	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	242, 709, 952
Eco52I	CGGCCG	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	495, 1051
Eco88I	CYCGRG	1 cut(s)	1015
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	519, 735
EcoT22I	ATGCAT	1 cut(s)	1306
EgeI	GGCGCC	2 cut(s)	430, 721
EheI	GGCGCC	2 cut(s)	430, 721
ErhI	CCWWGG	2 cut(s)	519, 735
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	7 cut(s)	60, 151, 453, 628, 1337, 1379, 1432
FalI	AAGNNNNNCTT	2 cut(s)	1673, 1705
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	7 cut(s)	56, 147, 449, 624, 1333, 1375, 1428
FauI	CCCGC	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	1209
Fnu4HI	GCNGC	9 cut(s)	264, 315, 330, 770, 819, 844, 1086, 1373, 1578
FokI	GGATG	6 cut(s)	607, 1127, 1172, 1239, 1313, 1451
Fsp4HI	GCNGC	9 cut(s)	264, 315, 330, 770, 819, 844, 1086, 1373, 1578
FspBI	CTAG	4 cut(s)	152, 899, 1611, 1725
GlaI	GCGC	6 cut(s)	328, 430, 721, 1198, 1200, 1380
GluI	GCNGC	9 cut(s)	264, 315, 330, 770, 819, 844, 1086, 1373, 1578
GsuI	CTGGAG	2 cut(s)	258, 1013
HaeII	RGCGCY	2 cut(s)	432, 723
HaeIII	GGCC	7 cut(s)	158, 381, 410, 818, 875, 1469, 1609
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	6 cut(s)	329, 431, 722, 1199, 1201, 1381
Hin1I	GRCGYC	4 cut(s)	282, 429, 720, 1586
Hin1II	CATG	7 cut(s)	60, 151, 453, 628, 1337, 1379, 1432
Hin6I	GCGC	6 cut(s)	327, 429, 720, 1197, 1199, 1379
HinP1I	GCGC	6 cut(s)	327, 429, 720, 1197, 1199, 1379
HincII	GTYRAC	3 cut(s)	286, 940, 1210
HindII	GTYRAC	3 cut(s)	286, 940, 1210
HinfI	GANTC	7 cut(s)	191, 216, 740, 749, 762, 1020, 1660
HphI	GGTGA	2 cut(s)	1073, 1424
Hpy166II	GTNNAC	6 cut(s)	286, 304, 570, 940, 1210, 1711
Hpy188III	TCNNGA	4 cut(s)	86, 256, 992, 1017
Hpy8I	GTNNAC	6 cut(s)	286, 304, 570, 940, 1210, 1711
HpyAV	CCTTC	8 cut(s)	253, 478, 808, 812, 816, 857, 1240, 1728
HpyCH4III	ACNGT	5 cut(s)	11, 301, 655, 937, 1111
HpyF3I	CTNAG	9 cut(s)	402, 851, 1094, 1104, 1146, 1151, 1403, 1485, 1680
Hsp92I	GRCGYC	4 cut(s)	282, 429, 720, 1586
Hsp92II	CATG	7 cut(s)	60, 151, 453, 628, 1337, 1379, 1432
HspAI	GCGC	6 cut(s)	327, 429, 720, 1197, 1199, 1379
KasI	GGCGCC	2 cut(s)	428, 719
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
Kzo9I	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
LmnI	GCTCC	6 cut(s)	577, 696, 775, 925, 1085, 1407
Lsp1109I	GCAGC	7 cut(s)	275, 301, 781, 830, 1072, 1359, 1589
LweI	GCATC	5 cut(s)	314, 1105, 1182, 1291, 1429
MaeI	CTAG	4 cut(s)	152, 899, 1611, 1725
MaeIII	GTNAC	7 cut(s)	511, 523, 670, 931, 965, 1061, 1714
MalI	GATC	9 cut(s)	51, 668, 699, 704, 830, 856, 911, 920, 990
MbiI	CCGCTC	2 cut(s)	821, 1410
MboI	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
MflI	RGATCY	2 cut(s)	697, 909
MhlI	GDGCHC	2 cut(s)	930, 1082
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	29, 34, 127, 585
MluNI	TGGCCA	1 cut(s)	158
Mly113I	GGCGCC	2 cut(s)	429, 720
MlyI	GAGTC	2 cut(s)	743, 749
MmeI	TCCRAC	4 cut(s)	252, 581, 768, 777
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	1306
MroNI	GCCGGC	1 cut(s)	722
MroXI	GAANNNNTTC	2 cut(s)	1664, 1738
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	4 cut(s)	24, 1053, 1167, 1750
MslI	CAYNNNNRTG	3 cut(s)	152, 404, 1433
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	772, 1085
MspR9I	CCNGG	3 cut(s)	237, 695, 707
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	1199, 1201
NaeI	GCCGGC	1 cut(s)	724
NarI	GGCGCC	2 cut(s)	429, 720
NciI	CCSGG	2 cut(s)	695, 707
NdeII	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	7 cut(s)	60, 151, 453, 628, 1337, 1379, 1432
NlaIV	GGNNCC	5 cut(s)	430, 692, 710, 721, 727
NmeAIII	GCCGAG	3 cut(s)	358, 893, 1104
NmuCI	GTSAC	2 cut(s)	511, 1061
NsiI	ATGCAT	1 cut(s)	1306
NspI	RCATGY	4 cut(s)	60, 1337, 1379, 1432
NspV	TTCGAA	2 cut(s)	291, 641
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	2 cut(s)	1337, 1379
PauI	GCGCGC	1 cut(s)	1197
PceI	AGGCCT	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 1628, 1637
PdiI	GCCGGC	1 cut(s)	724
PdmI	GAANNNNTTC	2 cut(s)	1664, 1738
PfeI	GAWTC	5 cut(s)	191, 216, 762, 1020, 1660
PflFI	GACNNNGTC	1 cut(s)	1588
PfoI	TCCNGGA	3 cut(s)	235, 693, 705
PkrI	GCNGC	9 cut(s)	265, 316, 331, 771, 820, 845, 1087, 1374, 1579
Ple19I	CGATCG	1 cut(s)	669
PleI	GAGTC	2 cut(s)	743, 748
PluTI	GGCGCC	2 cut(s)	432, 723
PpsI	GAGTC	2 cut(s)	743, 748
Ppu21I	YACGTR	1 cut(s)	931
PshAI	GACNNNNGTC	1 cut(s)	866
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	5 cut(s)	430, 692, 710, 721, 727
PspPI	GGNCC	4 cut(s)	242, 709, 952, 1607
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	697, 909
PsyI	GACNNNGTC	1 cut(s)	1588
PteI	GCGCGC	1 cut(s)	1197
PvuI	CGATCG	1 cut(s)	669
RsaI	GTAC	7 cut(s)	338, 359, 385, 1144, 1362, 1464, 1532
RsaNI	GTAC	7 cut(s)	337, 358, 384, 1143, 1361, 1463, 1531
RseI	CAYNNNNRTG	3 cut(s)	152, 404, 1433
SalI	GTCGAC	1 cut(s)	1208
SaqAI	TTAA	4 cut(s)	24, 1053, 1167, 1750
SatI	GCNGC	9 cut(s)	264, 315, 330, 770, 819, 844, 1086, 1373, 1578
Sau3AI	GATC	9 cut(s)	49, 666, 697, 702, 828, 854, 909, 918, 988
Sau96I	GGNCC	4 cut(s)	242, 709, 952, 1607
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	2 cut(s)	743, 749
ScrFI	CCNGG	3 cut(s)	237, 695, 707
SduI	GDGCHC	2 cut(s)	930, 1082
SfaNI	GCATC	5 cut(s)	314, 1105, 1182, 1291, 1429
SfcI	CTRYAG	1 cut(s)	96
SfoI	GGCGCC	2 cut(s)	430, 721
SfuI	TTCGAA	2 cut(s)	291, 641
SgrAI	CRCCGGYG	1 cut(s)	1058
SinI	GGWCC	3 cut(s)	242, 709, 952
SmiMI	CAYNNNNRTG	3 cut(s)	152, 404, 1433
SmlI	CTYRAG	2 cut(s)	84, 1397
SmoI	CTYRAG	2 cut(s)	84, 1397
SphI	GCATGC	2 cut(s)	1337, 1379
Sse9I	AATT	4 cut(s)	29, 34, 127, 585
SseBI	AGGCCT	1 cut(s)	875
SsiI	CCGC	7 cut(s)	330, 772, 819, 907, 1046, 1083, 1410
SspDI	GGCGCC	2 cut(s)	428, 719
SspMI	CTAG	4 cut(s)	152, 899, 1611, 1725
StuI	AGGCCT	1 cut(s)	875
StyD4I	CCNGG	3 cut(s)	235, 693, 705
StyI	CCWWGG	2 cut(s)	519, 735
TaaI	ACNGT	5 cut(s)	11, 301, 655, 937, 1111
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	4 cut(s)	29, 34, 127, 585
TatI	WGTACW	4 cut(s)	357, 1142, 1360, 1530
TauI	GCSGC	2 cut(s)	332, 821
TfiI	GAWTC	5 cut(s)	191, 216, 762, 1020, 1660
Tru1I	TTAA	4 cut(s)	24, 1053, 1167, 1750
Tru9I	TTAA	4 cut(s)	24, 1053, 1167, 1750
TscAI	CASTG	2 cut(s)	1297, 1506
TseFI	GTSAC	2 cut(s)	511, 1061
TseI	GCWGC	7 cut(s)	263, 314, 769, 843, 1085, 1372, 1577
Tsp45I	GTSAC	2 cut(s)	511, 1061
TspDTI	ATGAA	4 cut(s)	136, 641, 826, 1538
TspGWI	ACGGA	2 cut(s)	587, 1653
TspRI	CASTG	2 cut(s)	1297, 1506
Tth111I	GACNNNGTC	1 cut(s)	1588
VpaK11BI	GGWCC	3 cut(s)	242, 709, 952
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	4 cut(s)	60, 1337, 1379, 1432
XmiI	GTMKAC	1 cut(s)	1209
XmnI	GAANNNNTTC	2 cut(s)	1664, 1738
XspI	CTAG	4 cut(s)	152, 899, 1611, 1725
ZraI	GACGTC	1 cut(s)	1587
ZrmI	AGTACT	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.