Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005865

Physical Location & Seq

Genomic Coordinates Reverse (-)

59072119 .. 59073976

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGATTCGATGGCAAAGCCTGAAGATAGGATCAGTAAATTACCGAATGAAGTTGTTTATTGCATACTTTCCTTCCTTCCCACAGTAGATGCTGTCAGGACCACCGTGTTGTCTAAAAGATGGAGCAAAATGTGGGCGAAGCTTAAAACTCTAAATTTCGACAGCAATAAAAAGGAATTTCGGGACTATGAAGAGGCTTTTAGTTTCGTAACATTTGTCACTCGTGTACTCTTCTTTCGTAAAGTACCAGAGATACATAAATTCCGTCTAAAAATGCCCTATCCCCAGTATATACCTCATATTGAGGACTGGGTTTTCACTGCTGTTATCCGAAATGTTGTCGAGCTTGATCTTCATGTTTTTGAAACTGGGGTTGATGTTTTTGTGTTACCTGAGTGCATTTATTGGTGCAAAACGCTGAGGGTTTTGAAACTCCATCTGACGCCCTGGACGCGCACTGATGATCCTCCTGCATCCGGTTGTTTCCCAAGTCTCAAGTTTCTTCATGTATCAGTTTATAATCCTCAGGAAACAACTATGAATTTGCTTTTCTCTTGCTGCCCGGTACTTGAAGGTTTGACAATAGATGGAACCATTGATGGGAACACTGGTGATCATGTGAATTACAATTTCAAGGTCTCTGCACCAGAACTGAAGACATTGAGGATAAGTTTGGAAAATATATATGAGCCTGTCGATGTTCATATTAATGCCCCTAAGCTTGAAAACCTTGATCTGAAGCGTCTTGGTTTGACCAACTGTTTTCTCATTGGGAGTACAAAATCCCTAGTCAATGCCAGTATTGCTTTCAGAGAACACTTTGAAGTAGACAAAAAGCTTGATCTTTCCACCTTTGCAATGGCGCTTGTGGATCGAATTTCTAATGTTAAATTTCTATCTCTTTCAGCTCATTGCTTGGAGGACTTGCATCTCCCTGAGGATTGGCATCTCCCTGTTTTTCATAATGTGAACCAATTGAGGCTGGCTTTTTGGGAACACAATTTGTTGGAATTGTTAGCGGTTTTTCTCAATAGTGCACCTACTCTGGAAGATCTTGTCTTAGAAGATAGAACTGAAGGTTACACAGAACTGTCAGAGAGTCACTGGAATCCACCCGAGGAGGTGCCTGCTGGTTTATCATCAAACCTGAAGACCATCTCCTTTAAGGGATTCAAGGGAAGGCTGTTTGAGATGGAAATGATAAAGTATCTGTTGAAGAATGGTCAACTGTTGAATAAGATGACGATTTCTACAAGTCTGCATCTTTCGTATGATAGACAGAATGAGTTATACACAGAGTTTATGATGTTCCATAGGGCAGCAACTTGTCATGTTGAGTTCGTGCACATGCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

452

Amino Acids

52.34

Weight (kDa)

5.99

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 49	6.3e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	97 - 422	9.4e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	102 - 246	5.5e-12	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	372 - 416	6.8e-12	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30520 AT2G30520 AT2G30520
fragaria_vesca	FvH4_3g40860 FvH4_3g40860 FvH4_3g40860 FvH4_3g40860
malus_domestica	MD03G1048900.v1.1 MD11G1051400.v1.1
prunus_persica	Prupe.6G039200_v2.0.a1 Prupe.6G039200_v2.0.a1
pyrus_communis	pycom03g03840 pycom11g04120
rosa_chinensis	RchiOBHm_Chr5g0073591
rosa_laevigata	RLG00000036398
rosa_multiflora	Rmu_co8263269.1_g000001 Rmu_co8430755.1_g000001 Rmu_sc0042142.1_g000002 Rmu_ssc0000242.1_g000005
rosa_roxburghii	Rroxscaffold_1G00007670
rosa_rugosa	Rorug05G0425200 Rorug05G0425300 Rorug05G0425400
rosa_samantha	Rh5AG482200 Rh5BG503000 Rh5CG526100 Rh5DG515200
rosa_wichuraiana	Rw5G044800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	1123
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	1 cut(s)	454
AciI	CCGC	1 cut(s)	1019
AclWI	GGATC	3 cut(s)	38, 458, 879
AcsI	RAATTY	6 cut(s)	154, 176, 260, 541, 876, 890
AcuI	CTGAAG	5 cut(s)	42, 674, 758, 1095, 1169
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	4 cut(s)	228, 246, 567, 778
AfiI	CCNNNNNNNGG	2 cut(s)	476, 600
AgsI	TTSAA	9 cut(s)	365, 430, 572, 634, 725, 824, 1174, 1216, 1234
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	142, 346, 721, 838, 908
AluI	AGCT	5 cut(s)	142, 346, 721, 838, 908
Alw21I	GWGCWC	2 cut(s)	1039, 1347
Alw26I	GTCTC	2 cut(s)	497, 643
Alw44I	GTGCAC	2 cut(s)	1035, 1343
AlwI	GGATC	3 cut(s)	38, 458, 879
Ama87I	CYCGRG	1 cut(s)	1115
ApaLI	GTGCAC	2 cut(s)	1035, 1343
ApeKI	GCWGC	2 cut(s)	558, 1319
ApoI	RAATTY	6 cut(s)	154, 176, 260, 541, 876, 890
AseI	ATTAAT	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	456, 865
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	1115
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	2 cut(s)	525, 936
BaeGI	GKGCMC	2 cut(s)	1039, 1347
BanI	GGYRCC	1 cut(s)	1123
BauI	CACGAG	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	662, 1157
Bbv12I	GWGCWC	2 cut(s)	1039, 1347
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	545, 1331
BccI	CCATC	7 cut(s)	4, 114, 444, 581, 593, 1163, 1186
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	497, 643
BfaI	CTAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	866
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	2 cut(s)	559, 1320
BlsI	GCNGC	2 cut(s)	560, 1321
Bme1390I	CCNGG	2 cut(s)	448, 563
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	1115
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	592, 1125
BmrFI	CCNGG	2 cut(s)	448, 563
BmrI	ACTGGG	3 cut(s)	280, 319, 378
BmsI	GCATC	5 cut(s)	79, 482, 937, 955, 1270
BmuI	ACTGGG	3 cut(s)	280, 319, 378
BpiI	GAAGAC	2 cut(s)	662, 1157
Bpu10I	CCTNAGC	2 cut(s)	419, 717
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	945
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	2 cut(s)	446, 1116
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 600
Bse1I	ACTGG	6 cut(s)	286, 314, 373, 613, 798, 1109
Bse21I	CCTNAGG	2 cut(s)	525, 936
Bse3DI	GCAATG	2 cut(s)	864, 910
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	446, 1116
BseGI	GGATG	1 cut(s)	473
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	476, 600
BseMI	GCAATG	2 cut(s)	864, 910
BseMII	CTCAG	4 cut(s)	384, 410, 539, 927
BseNI	ACTGG	6 cut(s)	286, 314, 373, 613, 798, 1109
BseRI	GAGGAG	1 cut(s)	1133
BseSI	GKGCMC	2 cut(s)	1039, 1347
BseXI	GCAGC	2 cut(s)	545, 1331
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	1123
BsiHKAI	GWGCWC	2 cut(s)	1039, 1347
BsiHKCI	CYCGRG	1 cut(s)	1115
BsiSI	CCGG	2 cut(s)	477, 563
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	476, 600
BsmAI	GTCTC	2 cut(s)	497, 643
BsmFI	GGGAC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	643
BsoBI	CYCGRG	1 cut(s)	1115
Bsp1286I	GDGCHC	2 cut(s)	1039, 1347
Bsp143I	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
BspACI	CCGC	1 cut(s)	1019
BspCNI	CTCAG	4 cut(s)	385, 411, 538, 928
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	592, 1125
BspPI	GGATC	3 cut(s)	38, 458, 879
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	864, 910
BsrI	ACTGG	6 cut(s)	286, 314, 373, 613, 798, 1109
BssECI	CCNNGG	2 cut(s)	446, 1116
BssMI	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
BssNI	GRCGYC	1 cut(s)	443
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	5 cut(s)	85, 106, 761, 1092, 1230
Bst6I	CTCTTC	2 cut(s)	186, 236
BstACI	GRCGYC	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	984, 1128
BstDEI	CTNAG	6 cut(s)	393, 419, 525, 717, 936, 1060
BstF5I	GGATG	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	866
BstHHI	GCGC	2 cut(s)	456, 865
BstKTI	GATC	8 cut(s)	33, 352, 466, 616, 736, 844, 874, 1054
BstMAI	GTCTC	2 cut(s)	497, 643
BstMBI	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 803
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	1351
BstSCI	CCNGG	2 cut(s)	446, 561
BstSLI	GKGCMC	2 cut(s)	1039, 1347
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	545, 1331
BstV2I	GAAGAC	2 cut(s)	662, 1157
BstX2I	RGATCY	1 cut(s)	1051
BstYI	RGATCY	1 cut(s)	1051
Bsu36I	CCTNAGG	2 cut(s)	525, 936
BtsCI	GGATG	1 cut(s)	473
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	4 cut(s)	318, 456, 606, 1102
Cac8I	GCNNGC	2 cut(s)	984, 1128
CfoI	GCGC	2 cut(s)	456, 865
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	3 cut(s)	451, 460, 731
Csp6I	GTAC	4 cut(s)	227, 245, 566, 777
CviAII	CATG	5 cut(s)	356, 506, 617, 1331, 1348
CviQI	GTAC	4 cut(s)	227, 245, 566, 777
DdeI	CTNAG	6 cut(s)	393, 419, 525, 717, 936, 1060
DpnI	GATC	8 cut(s)	32, 351, 465, 615, 735, 843, 873, 1053
DpnII	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
Eam1104I	CTCTTC	2 cut(s)	186, 236
EarI	CTCTTC	2 cut(s)	186, 236
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	5 cut(s)	42, 674, 758, 1095, 1169
Eco81I	CCTNAGG	2 cut(s)	525, 936
Eco88I	CYCGRG	1 cut(s)	1115
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	5 cut(s)	359, 509, 620, 1334, 1351
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	5 cut(s)	355, 505, 616, 1330, 1347
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	2 cut(s)	559, 1320
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	559, 1320
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	2 cut(s)	455, 864
GluI	GCNGC	2 cut(s)	559, 1320
HaeII	RGCGCY	1 cut(s)	866
HapII	CCGG	2 cut(s)	477, 563
HgaI	GACGC	3 cut(s)	451, 460, 731
HhaI	GCGC	2 cut(s)	456, 865
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	5 cut(s)	359, 509, 620, 1334, 1351
Hin6I	GCGC	2 cut(s)	454, 863
HinP1I	GCGC	2 cut(s)	454, 863
HincII	GTYRAC	1 cut(s)	1226
HindII	GTYRAC	1 cut(s)	1226
HindIII	AAGCTT	3 cut(s)	140, 719, 836
HinfI	GANTC	4 cut(s)	5, 1099, 1108, 1170
HpaII	CCGG	2 cut(s)	477, 563
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	6 cut(s)	227, 829, 970, 1037, 1226, 1345
Hpy188I	TCNGA	5 cut(s)	332, 441, 738, 812, 1096
Hpy188III	TCNNGA	4 cut(s)	97, 182, 527, 1046
Hpy8I	GTNNAC	6 cut(s)	227, 829, 970, 1037, 1226, 1345
HpyAV	CCTTC	5 cut(s)	82, 86, 566, 1070, 1173
HpyCH4III	ACNGT	5 cut(s)	85, 106, 761, 1092, 1230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 803
HpyF3I	CTNAG	6 cut(s)	393, 419, 525, 717, 936, 1060
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	5 cut(s)	359, 509, 620, 1334, 1351
HspAI	GCGC	2 cut(s)	454, 863
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	2 cut(s)	545, 1331
LweI	GCATC	5 cut(s)	79, 482, 937, 955, 1270
MaeI	CTAG	1 cut(s)	788
MaeIII	GTNAC	5 cut(s)	208, 217, 387, 1079, 1100
MalI	GATC	8 cut(s)	32, 351, 465, 615, 735, 843, 873, 1053
MboI	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	1 cut(s)	1051
MhlI	GDGCHC	2 cut(s)	1039, 1347
MlyI	GAGTC	1 cut(s)	1108
MmeI	TCCRAC	1 cut(s)	987
MseI	TTAA	4 cut(s)	144, 708, 888, 1164
MslI	CAYNNNNRTG	1 cut(s)	708
MspI	CCGG	2 cut(s)	477, 563
MspR9I	CCNGG	2 cut(s)	448, 563
MunI	CAATTG	1 cut(s)	974
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	451, 803
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
NlaIII	CATG	5 cut(s)	359, 509, 620, 1334, 1351
NlaIV	GGNNCC	2 cut(s)	592, 1125
NmuCI	GTSAC	2 cut(s)	217, 1100
NspI	RCATGY	1 cut(s)	1351
PfeI	GAWTC	3 cut(s)	5, 1108, 1170
PkrI	GCNGC	2 cut(s)	560, 1321
PleI	GAGTC	1 cut(s)	1107
PpsI	GAGTC	1 cut(s)	1107
PshBI	ATTAAT	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	592, 1125
PspPI	GGNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	1051
RsaI	GTAC	4 cut(s)	228, 246, 567, 778
RsaNI	GTAC	4 cut(s)	227, 245, 566, 777
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	144, 708, 888, 1164
SatI	GCNGC	2 cut(s)	559, 1320
Sau3AI	GATC	8 cut(s)	30, 349, 463, 613, 733, 841, 871, 1051
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	1108
ScrFI	CCNGG	2 cut(s)	448, 563
SduI	GDGCHC	2 cut(s)	1039, 1347
SfaNI	GCATC	5 cut(s)	79, 482, 937, 955, 1270
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SsiI	CCGC	1 cut(s)	1019
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	2 cut(s)	446, 561
TaaI	ACNGT	5 cut(s)	85, 106, 761, 1092, 1230
TaqI	TCGA	5 cut(s)	8, 159, 342, 696, 874
TatI	WGTACW	2 cut(s)	226, 776
TfiI	GAWTC	3 cut(s)	5, 1108, 1170
Tru1I	TTAA	4 cut(s)	144, 708, 888, 1164
Tru9I	TTAA	4 cut(s)	144, 708, 888, 1164
TscAI	CASTG	4 cut(s)	325, 463, 613, 1109
TseFI	GTSAC	2 cut(s)	217, 1100
TseI	GCWGC	2 cut(s)	558, 1319
Tsp45I	GTSAC	2 cut(s)	217, 1100
TspDTI	ATGAA	7 cut(s)	63, 204, 344, 494, 554, 692, 950
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	4 cut(s)	325, 463, 613, 1109
VneI	GTGCAC	2 cut(s)	1035, 1343
VpaK11BI	GGWCC	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	6 cut(s)	154, 176, 260, 541, 876, 890
XceI	RCATGY	1 cut(s)	1351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.