Rmu_sc0000003.1_g000011
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000003.1
OG0015627
Physical Location & Seq
Reverse (-)
66443 .. 67546
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
atgtccggtggagttgcagttccttctgtgagcgacggccaggctttatttagacacaaccactacatcgactatcgcacccaggtagagtgggttccaatcccacagggaactacgagccttcccatccatatttatctcttcaagtcaatcgaaacggaactgagccaaaccattaccttccttcacagcaactatgatatgcagttcattgaggtcactagggttcttggagacatgggtgttccacggcaggtgcagcaaactattgttgcaaagatatctgagtttcttgttcttgggaatatggaccgcaccgctaataatggttatattgatgtgaccataatacacgatgcatcatacatagatctaaatattgttcccagtgatgaggaagatgattcatatagctttgatcaaatgtacatggatgactattttgatcatgataggattgcaaggcaaagaggttttgatttaatcgttgagccagataatgatgatagcgagatcgaatgtggagatcctttggatgcaatgttagccaggttatattatgatattaatcatgtggatgcggcggttatcggcatccatgagttgcttcaaaggaatcttcctacgttcacagaaacaaatgatgatcatcatattaaggattttcagctgatgaactatagggatattgaggcggctgatcagtatcataatcgaccacctcatgaatatccctataattcgtccgctgatcatgatactgaggatgaagatcattttgtgctggacgaattgctaatggaaacatatgataatggtaatgaggagattgatggggctacattggaatccatagaaacatatatggccatgaccatcccagcaagtaaatcagcgatagaggatttgaagaaagtgagattcgagagtgtggaaattgcgagacatgctgggttatgtagtatttgtttggaggactttaaagccggagttgaagctactcgcttgccttgcttacatttttttcatggagattgcgttgttcggtggctggagatcaatcatcaatgccccttgtgccgatttccaatgcctcatgactga

Protein Analysis

367

Amino Acids

42.16

Weight (kDa)

4.46

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 319 - 361 1.9e-14 Ring finger domain
zf-RING_11 PF17123 320 - 347 3.3e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 320 - 360 2.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 320 - 360 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 320 - 361 7.9e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
AciI CCGC 6 cut(s) 313, 318, 581, 584, 695, 747
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 2 cut(s) 37, 867
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 4 cut(s) 145, 611, 910, 995
AjnI CCWGG 3 cut(s) 39, 81, 548
AloI GAACNNNNNNTCC 1 cut(s) 35
AluBI AGCT 3 cut(s) 414, 670, 998
AluI AGCT 3 cut(s) 414, 670, 998
Alw26I GTCTC 2 cut(s) 228, 937
AlwI GGATC 1 cut(s) 521
AoxI GGCC 2 cut(s) 37, 867
ApeKI GCWGC 1 cut(s) 259
AseI ATTAAT 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 869
BbvI GCAGC 1 cut(s) 271
BccI CCATC 3 cut(s) 134, 827, 884
BceAI ACGGC 2 cut(s) 52, 266
BciT130I CCWGG 3 cut(s) 41, 83, 550
BclI TGATCA 5 cut(s) 418, 445, 646, 700, 751
BcoDI GTCTC 2 cut(s) 228, 937
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 1 cut(s) 370
BisI GCNGC 3 cut(s) 260, 582, 696
BlsI GCNGC 3 cut(s) 261, 583, 697
Bme1390I CCNGG 3 cut(s) 41, 83, 550
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 3 cut(s) 41, 83, 550
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 5 cut(s) 346, 368, 526, 568, 603
BmuI ACTGGG 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 1073
BsaBI GATNNNNATC 4 cut(s) 567, 648, 705, 771
BsaJI CCNNGG 2 cut(s) 81, 248
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 3 cut(s) 33, 1023, 1053
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 4 cut(s) 567, 648, 705, 771
BseBI CCWGG 3 cut(s) 41, 83, 550
BseDI CCNNGG 2 cut(s) 81, 248
BseGI GGATG 7 cut(s) 126, 439, 541, 583, 594, 772, 876
BseJI GATNNNNATC 4 cut(s) 567, 648, 705, 771
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 155, 276, 753
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 2 cut(s) 880, 950
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 39, 869
BsiSI CCGG 2 cut(s) 6, 987
BsmAI GTCTC 2 cut(s) 228, 937
BsnI GGCC 2 cut(s) 39, 869
Bsp1407I TGTACA 1 cut(s) 426
BspACI CCGC 6 cut(s) 313, 318, 581, 584, 695, 747
BspANI GGCC 2 cut(s) 39, 869
BspCNI CTCAG 3 cut(s) 156, 277, 754
BspHI TCATGA 4 cut(s) 448, 724, 754, 1096
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 81, 248
Bst2UI CCWGG 3 cut(s) 41, 83, 550
Bst6I CTCTTC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 1007
BstDEI CTNAG 3 cut(s) 164, 285, 762
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 7 cut(s) 126, 439, 541, 583, 594, 772, 876
BstMAI GTCTC 2 cut(s) 228, 937
BstMWI GCNNNNNNNGC 5 cut(s) 259, 545, 947, 1011, 1077
BstNI CCWGG 3 cut(s) 41, 83, 550
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 3 cut(s) 39, 81, 548
BstSFI CTRYAG 1 cut(s) 679
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 2 cut(s) 370, 526
BstYI RGATCY 2 cut(s) 370, 526
BsuRI GGCC 2 cut(s) 39, 869
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 7 cut(s) 126, 439, 541, 583, 594, 772, 876
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 1007
CciI TCATGA 4 cut(s) 448, 724, 754, 1096
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 427
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 164, 285, 762
DraI TTTAAA 1 cut(s) 982
EaeI YGGCCR 2 cut(s) 37, 867
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 39, 81, 548
EcoRV GATATC 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 361
FauNDI CATATG 1 cut(s) 808
FbaI TGATCA 5 cut(s) 418, 445, 646, 700, 751
Fnu4HI GCNGC 3 cut(s) 260, 582, 696
FokI GGATG 7 cut(s) 113, 446, 548, 581, 590, 779, 863
Fsp4HI GCNGC 3 cut(s) 260, 582, 696
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 260, 582, 696
GsaI CCCAGC 2 cut(s) 884, 954
GsuI CTGGAG 1 cut(s) 1073
HaeIII GGCC 2 cut(s) 39, 869
HapII CCGG 2 cut(s) 6, 987
HinfI GANTC 4 cut(s) 404, 616, 848, 921
HpaII CCGG 2 cut(s) 6, 987
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 5 cut(s) 449, 725, 755, 925, 1097
Hpy8I GTNNAC 1 cut(s) 630
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 33, 131, 190, 194
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 7 cut(s) 17, 205, 259, 275, 359, 461, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 545, 947, 1011, 1077
HpyF3I CTNAG 3 cut(s) 164, 285, 762
HpySE526I ACGT 1 cut(s) 626
Ksp22I TGATCA 5 cut(s) 418, 445, 646, 700, 751
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 5 cut(s) 346, 368, 526, 568, 603
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 2 cut(s) 217, 340
MboII GAAGA 5 cut(s) 133, 410, 611, 782, 922
MflI RGATCY 2 cut(s) 370, 526
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 3 cut(s) 739, 791, 936
MluNI TGGCCA 1 cut(s) 869
Mox20I TGGCCA 1 cut(s) 869
Mph1103I ATGCAT 1 cut(s) 361
MscI TGGCCA 1 cut(s) 869
MseI TTAA 4 cut(s) 482, 567, 657, 981
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 869
MspA1I CMGCKG 2 cut(s) 670, 749
MspI CCGG 2 cut(s) 6, 987
MspR9I CCNGG 3 cut(s) 41, 83, 550
MvaI CCWGG 3 cut(s) 41, 83, 550
MwoI GCNNNNNNNGC 5 cut(s) 259, 545, 947, 1011, 1077
NdeI CATATG 1 cut(s) 808
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 217, 340
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 950
PagI TCATGA 4 cut(s) 448, 724, 754, 1096
PaqCI CACCTGC 1 cut(s) 244
PfeI GAWTC 4 cut(s) 404, 616, 848, 921
PkrI GCNGC 3 cut(s) 261, 583, 697
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 39, 81, 548
PspFI CCCAGC 2 cut(s) 880, 950
PspGI CCWGG 3 cut(s) 39, 81, 548
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PsuI RGATCY 2 cut(s) 370, 526
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 4 cut(s) 482, 567, 657, 981
SatI GCNGC 3 cut(s) 260, 582, 696
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 3 cut(s) 41, 83, 550
SfaNI GCATC 5 cut(s) 346, 368, 526, 568, 603
SfcI CTRYAG 1 cut(s) 679
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 576
Sse9I AATT 3 cut(s) 739, 791, 936
SsiI CCGC 6 cut(s) 313, 318, 581, 584, 695, 747
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 39, 81, 548
TaiI ACGT 1 cut(s) 629
TaqI TCGA 5 cut(s) 69, 153, 516, 715, 924
TasI AATT 3 cut(s) 739, 791, 936
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 584, 698
TfiI GAWTC 4 cut(s) 404, 616, 848, 921
Tru1I TTAA 4 cut(s) 482, 567, 657, 981
Tru9I TTAA 4 cut(s) 482, 567, 657, 981
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 2 cut(s) 217, 340
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 2 cut(s) 217, 340
TspDTI ATGAA 6 cut(s) 199, 396, 689, 741, 783, 1016
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 567
XceI RCATGY 1 cut(s) 950
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.