Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000281.1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

59380 .. 60498

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgcatgaaagagtacttgaaatgttctatgctatccagccagtagttcgggaaaagccatctctcaaatgcattagtacttgtttaaatctactgattgaagcgaatcaggttgatttggcccaacagtttctcatgcatttgaagaagagtcttaacttgaagctgaatacatgcattgtcaacatcttggttaagcaccattgcacaaatggggatcttgaatctgccttcgaggttgtgaaggaaatgaaaaagtctaagctttcctatcctaatttgattacttactcgactctaattgatggtttatgtcaaagtggaagactgacagaagcaatggacctgtttgaggaaatgatctcaaaggatcaaatattgcctgatgtgctaacgtacaacattttgattaatggtttttgccgtggtgggaaagttaatagggcaaggaagatattggattttatgaagagcaaaggatgcaacccaaatgtattcaattactcagatctgatgaatggattctgtaaggaggaaagattggaggagaccaaggagcttttggatgaaatgaagagctttggtatcaaaccagatacagttgtctacactactttaattgattgctactgtaggactgggagagttgacgaagcgatagagttgctcaaagagatgaaagaaagacggtgcaaagctgatactgtgactttcaatgtgatacttggaggactatgtagagaaggtagaattgaggatgcgcttgagatgctggacaaacttccttatgagggtatctatctgaataagggaagctacaggattgtgttgaattccttgtgtcagaaaggcgaactaaacaaagctaaagagttgttgagattgatgatgggtagggggtttgtaccacattatgcaacttcaaacgagttgctagttagcctttgtgaggctggaatggcagatgatgcaactatggttttatttggattggtggagttgggtttcaaaccactgcctgattcctgggctctttttgttgaatcaatttgcagagaaagaaagctgctgcctgcatttgaactgctcgatgaattagttaatgaagagtttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

372

Amino Acids

42.44

Weight (kDa)

5.44

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	51 - 124	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	51 - 102	8.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	53 - 85	6.7e-06	PPR repeat
PPR_2	PF13041	57 - 106	2e-13	PPR repeat family
PPR_2	PF13041	92 - 142	1.4e-17	PPR repeat family
PPR_1	PF12854	92 - 120	2.4e-13	PPR repeat
PPR	PF01535	95 - 123	1.4e-09	PPR repeat
PPR_long	PF17177	107 - 260	1.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	117 - 175	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	126 - 157	9.4e-13	PPR repeat
PPR_2	PF13041	128 - 177	2.1e-16	PPR repeat family
PPR	PF01535	132 - 161	4.3e-08	PPR repeat
PPR_1	PF12854	159 - 192	1.2e-09	PPR repeat
PPR_2	PF13041	163 - 207	3.6e-11	PPR repeat family
PPR_long	PF17177	181 - 293	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	187 - 243	4.7e-13	Pentatricopeptide repeat domain
TPR_24	PF23276	188 - 264	7.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	195 - 227	1.7e-15	PPR repeat
PPR_2	PF13041	198 - 247	1.7e-19	PPR repeat family
PPR	PF01535	201 - 231	1.9e-11	PPR repeat
PPR_1	PF12854	230 - 260	6e-10	PPR repeat
PPR_2	PF13041	234 - 282	3.1e-11	PPR repeat family
PPR	PF01535	236 - 266	9.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	225, 378
AcsI	RAATTY	1 cut(s)	832
AfaI	GTAC	4 cut(s)	15, 79, 398, 906
AfiI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
AjnI	CCWGG	1 cut(s)	1025
AluBI	AGCT	8 cut(s)	166, 265, 559, 579, 698, 816, 866, 1066
AluI	AGCT	8 cut(s)	166, 265, 559, 579, 698, 816, 866, 1066
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	225, 378
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	1066, 1069
ApoI	RAATTY	1 cut(s)	832
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	2 cut(s)	121, 343
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BanII	GRGCYC	1 cut(s)	1033
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	1053, 1056
BccI	CCATC	3 cut(s)	67, 299, 883
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	1027
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	2 cut(s)	631, 817
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	2 cut(s)	1067, 1070
BlsI	GCNGC	2 cut(s)	1068, 1071
BmcAI	AGTACT	2 cut(s)	15, 79
Bme1390I	CCNGG	1 cut(s)	1027
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	121, 343
BmrFI	CCNGG	1 cut(s)	1027
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	4 cut(s)	470, 748, 759, 958
BmuI	ACTGGG	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	424, 552, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 791, 949
Bse1I	ACTGG	2 cut(s)	41, 643
Bse3DI	GCAATG	2 cut(s)	202, 345
BseBI	CCWGG	1 cut(s)	1027
BseDI	CCNNGG	3 cut(s)	424, 552, 1026
BseGI	GGATG	3 cut(s)	485, 571, 763
BseLI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
BseMI	GCAATG	2 cut(s)	202, 345
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	41, 643
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	1053, 1056
BshFI	GGCC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	217, 360, 370, 508
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	518
BspPI	GGATC	2 cut(s)	225, 378
BspQI	GCTCTTC	2 cut(s)	464, 569
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	202, 345
BsrI	ACTGG	2 cut(s)	41, 643
BssECI	CCNNGG	3 cut(s)	424, 552, 1026
BssMI	GATC	4 cut(s)	217, 360, 370, 508
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	1027
Bst4CI	ACNGT	5 cut(s)	129, 601, 632, 690, 706
Bst6I	CTCTTC	4 cut(s)	143, 464, 569, 1101
BstAPI	GCANNNNNTGC	2 cut(s)	480, 968
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	2 cut(s)	261, 505
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	2 cut(s)	350, 947
BstF5I	GGATG	3 cut(s)	485, 571, 763
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	4 cut(s)	220, 363, 373, 511
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	4 cut(s)	217, 360, 370, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
BstNI	CCWGG	1 cut(s)	1027
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	1025
BstSFI	CTRYAG	2 cut(s)	631, 817
BstV1I	GCAGC	2 cut(s)	1053, 1056
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	217, 508
BstYI	RGATCY	2 cut(s)	217, 508
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	485, 571, 763
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	1 cut(s)	1074
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	2 cut(s)	121, 343
Csp6I	GTAC	4 cut(s)	14, 78, 397, 905
CviAII	CATG	3 cut(s)	5, 136, 174
CviQI	GTAC	4 cut(s)	14, 78, 397, 905
DdeI	CTNAG	2 cut(s)	261, 505
DpnI	GATC	4 cut(s)	219, 362, 372, 510
DpnII	GATC	4 cut(s)	217, 360, 370, 508
DraI	TTTAAA	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	143, 464, 569, 1101
EarI	CTCTTC	4 cut(s)	143, 464, 569, 1101
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	1033
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	2 cut(s)	350, 947
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	1025
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	4 cut(s)	6, 74, 141, 179
EcoT38I	GRGCYC	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	3 cut(s)	8, 139, 177
FatI	CATG	3 cut(s)	4, 135, 173
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	1067, 1070
FokI	GGATG	3 cut(s)	492, 578, 770
FriOI	GRGCYC	1 cut(s)	1033
Fsp4HI	GCNGC	2 cut(s)	1067, 1070
FspBI	CTAG	1 cut(s)	935
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	2 cut(s)	1067, 1070
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	3 cut(s)	8, 139, 177
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	2 cut(s)	184, 649
HindII	GTYRAC	2 cut(s)	184, 649
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	7 cut(s)	106, 151, 224, 295, 522, 1022, 1043
Hpy166II	GTNNAC	3 cut(s)	184, 607, 649
Hpy188I	TCNGA	4 cut(s)	508, 513, 804, 846
Hpy188III	TCNNGA	2 cut(s)	50, 221
Hpy8I	GTNNAC	3 cut(s)	184, 607, 649
HpyAV	CCTTC	3 cut(s)	238, 241, 737
HpyCH4III	ACNGT	5 cut(s)	129, 601, 632, 690, 706
HpyCH4IV	ACGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
HpyF3I	CTNAG	2 cut(s)	261, 505
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	8, 139, 177
HspAI	GCGC	1 cut(s)	761
Kzo9I	GATC	4 cut(s)	217, 360, 370, 508
LguI	GCTCTTC	2 cut(s)	464, 569
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	1053, 1056
LweI	GCATC	4 cut(s)	470, 748, 759, 958
MaeI	CTAG	1 cut(s)	935
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	4 cut(s)	219, 362, 372, 510
MboI	GATC	4 cut(s)	217, 360, 370, 508
MboII	GAAGA	7 cut(s)	157, 160, 336, 463, 481, 586, 1118
MflI	RGATCY	2 cut(s)	217, 508
MhlI	GDGCHC	1 cut(s)	1033
MluCI	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
MlyI	GAGTC	2 cut(s)	160, 289
MnlI	CCTC	8 cut(s)	229, 346, 526, 538, 722, 748, 784, 943
Mph1103I	ATGCAT	4 cut(s)	6, 74, 141, 179
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
MspR9I	CCNGG	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
NdeII	GATC	4 cut(s)	217, 360, 370, 508
NlaIII	CATG	3 cut(s)	8, 139, 177
NmuCI	GTSAC	1 cut(s)	706
NsiI	ATGCAT	4 cut(s)	6, 74, 141, 179
NspI	RCATGY	1 cut(s)	177
PciSI	GCTCTTC	2 cut(s)	464, 569
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	5 cut(s)	106, 224, 522, 1022, 1043
PkrI	GCNGC	2 cut(s)	1068, 1071
PleI	GAGTC	2 cut(s)	159, 289
PpsI	GAGTC	2 cut(s)	159, 289
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	1025
PspGI	CCWGG	1 cut(s)	1025
PspPI	GGNCC	2 cut(s)	121, 343
PsuI	RGATCY	2 cut(s)	217, 508
RsaI	GTAC	4 cut(s)	15, 79, 398, 906
RsaNI	GTAC	4 cut(s)	14, 78, 397, 905
SapI	GCTCTTC	2 cut(s)	464, 569
SaqAI	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
SatI	GCNGC	2 cut(s)	1067, 1070
Sau3AI	GATC	4 cut(s)	217, 360, 370, 508
Sau96I	GGNCC	2 cut(s)	121, 343
ScaI	AGTACT	2 cut(s)	15, 79
SchI	GAGTC	2 cut(s)	160, 289
ScrFI	CCNGG	1 cut(s)	1027
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	4 cut(s)	470, 748, 759, 958
SfcI	CTRYAG	2 cut(s)	631, 817
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	1025
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	129, 601, 632, 690, 706
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	234, 293, 1089
TasI	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
TatI	WGTACW	2 cut(s)	13, 77
TfiI	GAWTC	5 cut(s)	106, 224, 522, 1022, 1043
Tru1I	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
Tru9I	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
TscAI	CASTG	1 cut(s)	1020
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	2 cut(s)	1066, 1069
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	9 cut(s)	21, 266, 482, 530, 582, 587, 692, 1107, 1119
TspRI	CASTG	1 cut(s)	1020
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	2 cut(s)	350, 947
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 559
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	1 cut(s)	935
ZrmI	AGTACT	2 cut(s)	15, 79
Zsp2I	ATGCAT	4 cut(s)	6, 74, 141, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.