Rmu_sc0000294.1_g000007

protein KIAA0930 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000294.1
OG0004749
Physical Location & Seq
Forward (+)
27269 .. 30786
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1128 bp
atggccgccactacctcctcctccaactgctcaaacttcttcaacttccgatctaatactacgccaaaggtccgagtctcatcaagccacggctgtcgtggcaaggttgatggggtggggatgtggctcatcaacagtgtctcagctgctttctttgcttccttggagcgatgctcttgcatccgcatcgctaccaacgacgatgccgctgacgactccaacgacttgccattgatctttaacgacgggaatcttgaacgacattatatcggtgacaccgccactagccggaggagaacggccgacaaagggaagaaggtgctctcaaatctagcttgcagcaaccatgaaaccgaccttcggaatcatcaagctgatcaagataaaccattatctccaatatacaaggtagtaaagactgtttatgcatctcccagccgtgtcaactttcatttggactcgcaaaaggaagtggagacgacgcctgcttatccagatatttgttttgctgttgatgactttgactccacttttgatgctgtggtattgactgattcagaccattgctattgtgtaatactcaatgcacatgatggggcagcatttcctaaggcaaaggatcctgatgattgcagttctagtgatagttcctctttgaaggttgacactagttctgcaaaggcaaaaagttccaagctgacacttttttcgggatttgtcagctatcaaatggtacgagatgcatatgatgccggcaagtctcgttttgggaaccttttatcacttgctcattcccctggcaaacaagacaaactgtacatgaaaggtcctggaggccgcggggaagttgaagtggctgtttctggtgttgtagatcagagccagcaagatacaggccctttttcacctgttacatccaacagaggattcggaattggctttatggttcgtaaagcagcttccgttgcatctgtagcggcaaagaatgcttatgcggctgctgcttctagccatagttttgacgaggagatgatccctctcaaatgttgcttgatgtccatttcattaccgtgggaacacatagcatatgatcttctttttaagggcactcctcctgtgaacttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2045

Protein Analysis

375

Amino Acids

40.46

Weight (kDa)

6.2

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2045 PF09741 125 - 290 1.7e-48 Uncharacterized conserved protein (DUF2045)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 840
AciI CCGC 8 cut(s) 6, 184, 207, 279, 838, 840, 977, 995
AclWI GGATC 3 cut(s) 614, 627, 1027
AcoI YGGCCR 2 cut(s) 3, 300
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 2 cut(s) 735, 818
AfiI CCNNNNNNNGG 3 cut(s) 288, 309, 360
AgsI TTSAA 4 cut(s) 43, 257, 658, 851
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 2 cut(s) 796, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 6 cut(s) 146, 335, 374, 697, 723, 959
AluI AGCT 6 cut(s) 146, 335, 374, 697, 723, 959
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 4 cut(s) 82, 145, 470, 765
AlwI GGATC 3 cut(s) 614, 627, 1027
AoxI GGCC 4 cut(s) 3, 300, 835, 895
ApeKI GCWGC 6 cut(s) 146, 339, 599, 956, 998, 1001
ArsI GACNNNNNNTTYG 4 cut(s) 515, 547, 691, 723
AspS9I GGNCC 3 cut(s) 70, 827, 896
AsuHPI GGTGA 2 cut(s) 284, 897
AvaII GGWCC 2 cut(s) 70, 827
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 1109
BamHI GGATCC 1 cut(s) 619
BarI GAAGNNNNNNTAC 2 cut(s) 943, 975
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 133, 351, 611, 968, 985, 988
BccI CCATC 2 cut(s) 104, 587
BceAI ACGGC 3 cut(s) 106, 315, 423
BcgI CGANNNNNNTGC 4 cut(s) 159, 169, 193, 203
BciT130I CCWGG 2 cut(s) 798, 831
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 4 cut(s) 82, 145, 470, 765
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 5 cut(s) 285, 332, 639, 669, 1008
BfmI CTRYAG 1 cut(s) 972
Bme1390I CCNGG 2 cut(s) 798, 831
Bme18I GGWCC 2 cut(s) 70, 827
BmgT120I GGNCC 3 cut(s) 70, 827, 896
BmiI GGNNCC 2 cut(s) 621, 773
BmrFI CCNGG 2 cut(s) 798, 831
BmsI GCATC 9 cut(s) 161, 189, 193, 195, 437, 526, 730, 739, 977
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 5 cut(s) 88, 162, 796, 838, 1070
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 309, 360
Bse118I RCCGGY 1 cut(s) 752
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 798, 831
BseDI CCNNGG 5 cut(s) 88, 162, 796, 838, 1070
BseGI GGATG 3 cut(s) 126, 180, 914
BseLI CCNNNNNNNGG 3 cut(s) 288, 309, 360
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 5 cut(s) 7, 10, 307, 1040, 1101
BseSI GKGCMC 1 cut(s) 1109
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 6 cut(s) 133, 351, 611, 968, 985, 988
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 840
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 5, 302, 837, 897
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 289, 753
BslI CCNNNNNNNGG 3 cut(s) 288, 309, 360
BsmAI GTCTC 4 cut(s) 82, 145, 470, 765
BsmBI CGTCTC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 4 cut(s) 5, 302, 837, 897
Bsp1286I GDGCHC 2 cut(s) 324, 1109
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
BspACI CCGC 8 cut(s) 6, 184, 207, 279, 838, 840, 977, 995
BspANI GGCC 4 cut(s) 5, 302, 837, 897
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 1 cut(s) 840
BspLI GGNNCC 2 cut(s) 621, 773
BspPI GGATC 3 cut(s) 614, 627, 1027
BsrDI GCAATG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 752
BsrGI TGTACA 1 cut(s) 816
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 5 cut(s) 88, 162, 796, 838, 1070
BssMI GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 798, 831
Bst4CI ACNGT 4 cut(s) 137, 421, 816, 1071
BstACI GRCGYC 1 cut(s) 482
BstAPI GCANNNNNTGC 2 cut(s) 749, 986
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 4 cut(s) 337, 486, 754, 884
BstDEI CTNAG 2 cut(s) 142, 609
BstDSI CCRYGG 3 cut(s) 88, 838, 1070
BstF5I GGATG 3 cut(s) 126, 180, 914
BstFNI CGCG 1 cut(s) 840
BstKTI GATC 7 cut(s) 53, 237, 379, 622, 877, 1035, 1093
BstMAI GTCTC 4 cut(s) 82, 145, 470, 765
BstMBI GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 8 cut(s) 99, 155, 749, 965, 974, 986, 995, 1001
BstNI CCWGG 2 cut(s) 798, 831
BstSCI CCNGG 2 cut(s) 796, 829
BstSFI CTRYAG 1 cut(s) 972
BstSLI GKGCMC 1 cut(s) 1109
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 6 cut(s) 133, 351, 611, 968, 985, 988
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BstZI CGGCCG 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 4 cut(s) 5, 302, 837, 897
BtgI CCRYGG 3 cut(s) 88, 838, 1070
BtgZI GCGATG 2 cut(s) 172, 184
BtsCI GGATG 3 cut(s) 126, 180, 914
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 4 cut(s) 337, 486, 754, 884
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 3 cut(s) 70, 827, 896
Cfr42I CCGCGG 1 cut(s) 841
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 734, 817
CviAII CATG 3 cut(s) 347, 590, 820
CviQI GTAC 2 cut(s) 734, 817
DdeI CTNAG 2 cut(s) 142, 609
DpnI GATC 7 cut(s) 52, 236, 378, 621, 876, 1034, 1092
DpnII GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
EaeI YGGCCR 2 cut(s) 3, 300
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 70, 827
Eco52I CGGCCG 1 cut(s) 300
Eco81I CCTNAGG 1 cut(s) 609
EcoO109I RGGNCCY 2 cut(s) 827, 896
EcoRII CCWGG 2 cut(s) 796, 829
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 2 cut(s) 430, 745
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 3 cut(s) 350, 593, 823
FatI CATG 3 cut(s) 346, 589, 819
FauI CCCGC 1 cut(s) 833
FauNDI CATATG 2 cut(s) 745, 1087
FbaI TGATCA 1 cut(s) 376
FokI GGATG 3 cut(s) 133, 167, 901
FspBI CTAG 5 cut(s) 285, 332, 639, 669, 1008
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 4 cut(s) 5, 302, 837, 897
HapII CCGG 2 cut(s) 289, 753
HgaI GACGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 3 cut(s) 350, 593, 823
HincII GTYRAC 2 cut(s) 445, 664
HindII GTYRAC 2 cut(s) 445, 664
HinfI GANTC 8 cut(s) 75, 215, 250, 364, 458, 524, 554, 927
HpaII CCGG 2 cut(s) 289, 753
HphI GGTGA 2 cut(s) 284, 897
Hpy166II GTNNAC 3 cut(s) 445, 664, 1120
Hpy188I TCNGA 6 cut(s) 50, 74, 363, 559, 879, 932
Hpy188III TCNNGA 5 cut(s) 254, 380, 494, 623, 711
Hpy8I GTNNAC 3 cut(s) 445, 664, 1120
Hpy99I CGWCG 3 cut(s) 203, 248, 484
HpyAV CCTTC 3 cut(s) 310, 368, 652
HpyCH4III ACNGT 4 cut(s) 137, 421, 816, 1071
HpyCH4V TGCA 8 cut(s) 180, 339, 428, 587, 633, 677, 743, 968
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 155, 749, 965, 974, 986, 995, 1001
HpyF3I CTNAG 2 cut(s) 142, 609
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 3 cut(s) 350, 593, 823
KroI GCCGGC 1 cut(s) 752
KroNI GCCGGC 1 cut(s) 754
Ksp22I TGATCA 1 cut(s) 376
KspI CCGCGG 1 cut(s) 841
Kzo9I GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 6 cut(s) 133, 351, 611, 968, 985, 988
LweI GCATC 9 cut(s) 161, 189, 193, 195, 437, 526, 730, 739, 977
MaeI CTAG 5 cut(s) 285, 332, 639, 669, 1008
MaeIII GTNAC 2 cut(s) 272, 910
MalI GATC 7 cut(s) 52, 236, 378, 621, 876, 1034, 1092
MboI GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
MboII GAAGA 3 cut(s) 31, 325, 1085
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 324, 1109
MluCI AATT 1 cut(s) 933
MlyI GAGTC 4 cut(s) 84, 209, 452, 518
MmeI TCCRAC 3 cut(s) 48, 243, 942
Mph1103I ATGCAT 2 cut(s) 430, 745
MroNI GCCGGC 1 cut(s) 752
MseI TTAA 2 cut(s) 240, 1101
MslI CAYNNNNRTG 1 cut(s) 1069
MspA1I CMGCKG 3 cut(s) 146, 209, 840
MspI CCGG 2 cut(s) 289, 753
MspR9I CCNGG 2 cut(s) 798, 831
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 2 cut(s) 798, 831
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 8 cut(s) 99, 155, 749, 965, 974, 986, 995, 1001
NaeI GCCGGC 1 cut(s) 754
NdeI CATATG 2 cut(s) 745, 1087
NdeII GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
NgoMIV GCCGGC 1 cut(s) 752
NlaIII CATG 3 cut(s) 350, 593, 823
NlaIV GGNNCC 2 cut(s) 621, 773
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 2 cut(s) 430, 745
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 219
PctI GAATGC 1 cut(s) 991
PdiI GCCGGC 1 cut(s) 754
PfeI GAWTC 4 cut(s) 250, 364, 554, 927
PfoI TCCNGGA 1 cut(s) 829
PleI GAGTC 4 cut(s) 83, 209, 452, 518
PpsI GAGTC 4 cut(s) 83, 209, 452, 518
PpuMI RGGWCCY 1 cut(s) 827
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 796, 829
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 796, 829
PspN4I GGNNCC 2 cut(s) 621, 773
PspPI GGNCC 3 cut(s) 70, 827, 896
PspPPI RGGWCCY 1 cut(s) 827
PsuI RGATCY 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 735, 818
RsaNI GTAC 2 cut(s) 734, 817
RseI CAYNNNNRTG 1 cut(s) 1069
SacII CCGCGG 1 cut(s) 841
SaqAI TTAA 2 cut(s) 240, 1101
Sau3AI GATC 7 cut(s) 50, 234, 376, 619, 874, 1032, 1090
Sau96I GGNCC 3 cut(s) 70, 827, 896
SchI GAGTC 4 cut(s) 84, 209, 452, 518
ScrFI CCNGG 2 cut(s) 798, 831
SduI GDGCHC 2 cut(s) 324, 1109
SfaNI GCATC 9 cut(s) 161, 189, 193, 195, 437, 526, 730, 739, 977
SfcI CTRYAG 1 cut(s) 972
Sfr303I CCGCGG 1 cut(s) 841
SgrBI CCGCGG 1 cut(s) 841
SinI GGWCC 2 cut(s) 70, 827
SmiMI CAYNNNNRTG 1 cut(s) 1069
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 1 cut(s) 933
SsiI CCGC 8 cut(s) 6, 184, 207, 279, 838, 840, 977, 995
SspMI CTAG 5 cut(s) 285, 332, 639, 669, 1008
StyD4I CCNGG 2 cut(s) 796, 829
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 4 cut(s) 137, 421, 816, 1071
TasI AATT 1 cut(s) 933
TatI WGTACW 1 cut(s) 816
TauI GCSGC 5 cut(s) 8, 209, 840, 980, 998
TfiI GAWTC 4 cut(s) 250, 364, 554, 927
Tru1I TTAA 2 cut(s) 240, 1101
Tru9I TTAA 2 cut(s) 240, 1101
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 6 cut(s) 146, 339, 599, 956, 998, 1001
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 363, 440, 836, 1053
TspGWI ACGGA 1 cut(s) 952
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 70, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 5 cut(s) 285, 332, 639, 669, 1008
Zsp2I ATGCAT 2 cut(s) 430, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.