Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

500788 .. 504289

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgaaccaagtcacccttgaccacgaatccatcgcccccgagatctctttggtacccatccttgaagccctaaaccacgaatctaccgcctctgagatctctctgaagtgcttactgacatcaaatagtaagcctcgttgtggggcagatgtgcatctattcggtgggtgcattaagtcgtggaaaaacctcttttttgtgagacctgatgctgtgtttaatgggaagaaaccgatcagcaaccgacctcctcttcctccttctccgcctccgaccactctcctccttcttctccgcctccttctctccagtccagtcgaagccggagctgtgttcaccgttctcctttctctctccgtgggcttcccgctctcagcccttctcttcgaccgtcgaggcgtcgacgaccttcgctctcctccacttgagaagctgaaaactttctgggttcgatttctaattcttcaaagtccgtgtcttggcatgctagttgctgcaacttctggaactggatttgttcttggaagtggcagtgccgtcgattttgctggactttgttggatatgtgttggtaccatgatgtttgcagcatctgctaactctttaaatcaggtgttcgagaagtataatgatgccaaactgaagagaacgatgcaaagacccctaccttcaagacgcattactaggcctcatgcaattgcctgggcatttactgctggcttagctggcactgctttgttggcaagtaaggctaatatgctggcagctggtcttgatgcttccaatttaatactttatgcatttctgtatactccattaaagcaaattcacccagtaaatacatgggttggcactgttgttggtgctatcccaccacttctagggttgggtactgatgggattgttaacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

304

Amino Acids

32.6

Weight (kDa)

9.34

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	167 - 295	2e-30	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	52, 572
AccB1I	GGYRCC	2 cut(s)	52, 572
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	2 cut(s)	402, 809
AciI	CCGC	4 cut(s)	87, 266, 295, 368
AcsI	RAATTY	1 cut(s)	825
AcuI	CTGAAG	2 cut(s)	125, 662
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	3 cut(s)	54, 574, 892
AfiI	CCNNNNNNNGG	3 cut(s)	140, 479, 881
AgsI	TTSAA	3 cut(s)	65, 467, 672
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	4 cut(s)	329, 433, 725, 767
AluI	AGCT	4 cut(s)	329, 433, 725, 767
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	494, 587, 764
ApoI	RAATTY	1 cut(s)	825
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
Asp700I	GAANNNNTTC	1 cut(s)	440
Asp718I	GGTACC	2 cut(s)	52, 572
AsuHPI	GGTGA	3 cut(s)	4, 328, 821
AvaI	CYCGRG	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	52, 572
BbvI	GCAGC	3 cut(s)	481, 599, 776
BccI	CCATC	3 cut(s)	38, 65, 890
BceAI	ACGGC	1 cut(s)	521
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	3 cut(s)	488, 684, 881
BglII	AGATCT	2 cut(s)	42, 96
BisI	GCNGC	3 cut(s)	495, 588, 765
BlpI	GCTNAGC	1 cut(s)	721
BlsI	GCNGC	3 cut(s)	496, 589, 766
Bme1390I	CCNGG	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	54, 574
BmrFI	CCNGG	1 cut(s)	703
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	6 cut(s)	163, 199, 599, 622, 642, 766
BmuI	ACTGGG	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	292
Bpu1102I	GCTNAGC	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	357, 702
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 479, 881
Bse1I	ACTGG	4 cut(s)	309, 314, 514, 833
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	357, 702
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	3 cut(s)	140, 479, 881
BseMII	CTCAG	2 cut(s)	84, 387
BseNI	ACTGG	4 cut(s)	309, 314, 514, 833
BseRI	GAGGAG	3 cut(s)	240, 272, 408
BseXI	GCAGC	3 cut(s)	481, 599, 776
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	688
BshNI	GGYRCC	2 cut(s)	52, 572
BsiEI	CGRYCG	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	3 cut(s)	140, 479, 881
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	688
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	42, 96, 234
Bsp1720I	GCTNAGC	1 cut(s)	721
BspACI	CCGC	4 cut(s)	87, 266, 295, 368
BspANI	GGCC	1 cut(s)	688
BspCNI	CTCAG	2 cut(s)	85, 386
BspLI	GGNNCC	2 cut(s)	54, 574
BspT107I	GGYRCC	2 cut(s)	52, 572
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	370
BsrI	ACTGG	4 cut(s)	309, 314, 514, 833
BssECI	CCNNGG	2 cut(s)	357, 702
BssMI	GATC	3 cut(s)	42, 96, 234
BssNAI	GTATAC	1 cut(s)	810
BssNI	GRCGYC	1 cut(s)	399
Bst1107I	GTATAC	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	3 cut(s)	340, 392, 856
Bst6I	CTCTTC	3 cut(s)	258, 389, 638
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	2 cut(s)	593, 713
BstC8I	GCNNGC	4 cut(s)	485, 718, 727, 762
BstDEI	CTNAG	3 cut(s)	93, 373, 721
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	45, 99, 237
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	42, 96, 234
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	7 cut(s)	593, 713, 722, 726, 731, 740, 749
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	701
BstV1I	GCAGC	3 cut(s)	481, 599, 776
BstX2I	RGATCY	2 cut(s)	42, 96
BstYI	RGATCY	2 cut(s)	42, 96
BstZ17I	GTATAC	1 cut(s)	810
BsuRI	GGCC	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	538, 729
BtsIMutI	CAGTG	3 cut(s)	538, 729, 852
Cac8I	GCNNGC	4 cut(s)	485, 718, 727, 762
CaiI	CAGNNNCTG	1 cut(s)	593
CseI	GACGC	2 cut(s)	388, 684
Csp6I	GTAC	3 cut(s)	53, 573, 891
CviAII	CATG	4 cut(s)	484, 577, 692, 843
CviQI	GTAC	3 cut(s)	53, 573, 891
DdeI	CTNAG	3 cut(s)	93, 373, 721
DpnI	GATC	3 cut(s)	44, 98, 236
DpnII	GATC	3 cut(s)	42, 96, 234
DraI	TTTAAA	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	258, 389, 638
EarI	CTCTTC	3 cut(s)	258, 389, 638
EciI	GGCGGA	2 cut(s)	255, 284
Eco147I	AGGCCT	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	125, 662
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	802
FaeI	CATG	4 cut(s)	487, 580, 695, 846
FaiI	YATR	9 cut(s)	485, 565, 578, 627, 693, 758, 798, 810, 844
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	4 cut(s)	483, 576, 691, 842
FauI	CCCGC	1 cut(s)	375
FblI	GTMKAC	2 cut(s)	402, 809
Fnu4HI	GCNGC	3 cut(s)	495, 588, 765
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	495, 588, 765
FspBI	CTAG	3 cut(s)	488, 684, 881
GluI	GCNGC	3 cut(s)	495, 588, 765
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	688
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	2 cut(s)	388, 684
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	487, 580, 695, 846
HincII	GTYRAC	2 cut(s)	403, 907
HindII	GTYRAC	2 cut(s)	403, 907
HinfI	GANTC	2 cut(s)	26, 80
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	4, 328, 821
Hpy166II	GTNNAC	4 cut(s)	336, 403, 810, 907
Hpy188I	TCNGA	4 cut(s)	94, 105, 273, 914
Hpy188III	TCNNGA	4 cut(s)	504, 619, 672, 773
Hpy8I	GTNNAC	4 cut(s)	336, 403, 810, 907
Hpy99I	CGWCG	4 cut(s)	396, 404, 407, 542
HpyAV	CCTTC	6 cut(s)	270, 296, 311, 389, 419, 678
HpyCH4III	ACNGT	3 cut(s)	340, 392, 856
HpyCH4V	TGCA	7 cut(s)	154, 171, 497, 587, 655, 695, 800
HpyF10VI	GCNNNNNNNGC	7 cut(s)	593, 713, 722, 726, 731, 740, 749
HpyF3I	CTNAG	3 cut(s)	93, 373, 721
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	487, 580, 695, 846
KpnI	GGTACC	2 cut(s)	56, 576
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	3 cut(s)	42, 96, 234
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	481, 599, 776
LweI	GCATC	6 cut(s)	163, 199, 599, 622, 642, 766
MaeI	CTAG	3 cut(s)	488, 684, 881
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	44, 98, 236
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	3 cut(s)	42, 96, 234
MboII	GAAGA	6 cut(s)	238, 245, 281, 376, 455, 655
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	42, 96
MluCI	AATT	4 cut(s)	459, 696, 784, 825
MmeI	TCCRAC	2 cut(s)	296, 539
Mph1103I	ATGCAT	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	6 cut(s)	174, 219, 605, 788, 818, 906
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	703
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	7 cut(s)	593, 713, 722, 726, 731, 740, 749
NdeII	GATC	3 cut(s)	42, 96, 234
NlaIII	CATG	4 cut(s)	487, 580, 695, 846
NlaIV	GGNNCC	2 cut(s)	54, 574
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	487
PaeI	GCATGC	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	26, 80
PkrI	GCNGC	3 cut(s)	496, 589, 766
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	54, 574
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	42, 96
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	3 cut(s)	54, 574, 892
RsaNI	GTAC	3 cut(s)	53, 573, 891
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	6 cut(s)	174, 219, 605, 788, 818, 906
SatI	GCNGC	3 cut(s)	495, 588, 765
Sau3AI	GATC	3 cut(s)	42, 96, 234
ScrFI	CCNGG	1 cut(s)	703
SfaNI	GCATC	6 cut(s)	163, 199, 599, 622, 642, 766
SgrDI	CGTCGACG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	459, 696, 784, 825
SseBI	AGGCCT	1 cut(s)	688
SsiI	CCGC	4 cut(s)	87, 266, 295, 368
SspMI	CTAG	3 cut(s)	488, 684, 881
StuI	AGGCCT	1 cut(s)	688
StyD4I	CCNGG	1 cut(s)	701
TaaI	ACNGT	3 cut(s)	340, 392, 856
TaqI	TCGA	7 cut(s)	318, 387, 394, 402, 451, 540, 618
TasI	AATT	4 cut(s)	459, 696, 784, 825
TfiI	GAWTC	2 cut(s)	26, 80
Tru1I	TTAA	6 cut(s)	174, 219, 605, 788, 818, 906
Tru9I	TTAA	6 cut(s)	174, 219, 605, 788, 818, 906
TscAI	CASTG	3 cut(s)	538, 736, 859
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	494, 587, 764
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	346, 462
TspRI	CASTG	3 cut(s)	538, 736, 859
XapI	RAATTY	1 cut(s)	825
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XmiI	GTMKAC	2 cut(s)	402, 809
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	3 cut(s)	488, 684, 881
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.