Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000501.1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

102328 .. 105152

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggcgagctcgagtaccttcttcttcaatccaatcctctctccatttctgaaacatccaatgccgtctccaatgaccctacaaaattcagctgcgttgtaaacaactacatagaagcagttaaagaattggcatgtgaggttcttgatctggttggagaaggtctatgggtttcggacaagtctgtattcagtggcttcatcagagacgtccagagcgactcgattctccggctgaaccactatccaccactggtggataaggacccatccgcaaaactagctcatccttgtgcgaataacaatactaggattggattcggagagcattctgacccccagattttgaccattttgagatccaacgatgtcggaggccttcagatttctctttatgatggcttgtgggttccagtcccgccggactcgaatgagttttttgtcatggtcggtgatgtcttgcaggctttgacgaatgggcggtttcagagtgtgaggcacagggcattggctaactctgtaacgaagccaagaatgtctatggtctactttggggcaccatccctaaacgcatgtatctcgccccttcctgagatggtgtctccccagaagccaagtctgtataaaccattcacatggggtcaatacaagaaagctgcatacactacacgtttgggagattctcgtcttgacaatttcaaaattacaaataatccatctacatgcttggacaatcttgtagatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

249

Amino Acids

27.53

Weight (kDa)

5.37

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	74 - 185	1.4e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	3 cut(s)	273, 419, 481
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	2 cut(s)	29, 700
AluBI	AGCT	4 cut(s)	10, 93, 284, 656
AluI	AGCT	4 cut(s)	10, 93, 284, 656
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	73, 201, 606
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	93, 656
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	80, 643
BccI	CCATC	5 cut(s)	277, 392, 568, 589, 724
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BcoDI	GTCTC	3 cut(s)	73, 201, 606
BfaI	CTAG	2 cut(s)	281, 309
BisI	GCNGC	2 cut(s)	94, 657
BlsI	GCNGC	2 cut(s)	95, 658
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	267, 411, 558
BsaHI	GRCGYC	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	258, 413
BseGI	GGATG	4 cut(s)	56, 269, 286, 560
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	258, 413
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	80, 643
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	232, 422
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	3 cut(s)	73, 201, 606
BsmBI	CGTCTC	2 cut(s)	73, 201
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	12, 559
Bsp143I	GATC	3 cut(s)	148, 359, 742
BspACI	CCGC	3 cut(s)	273, 419, 481
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	267, 411, 558
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	258, 413
BssMI	GATC	3 cut(s)	148, 359, 742
BssNI	GRCGYC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	8, 465
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	4 cut(s)	56, 269, 286, 560
BstKTI	GATC	3 cut(s)	151, 362, 745
BstMAI	GTCTC	3 cut(s)	73, 201, 606
BstMBI	GATC	3 cut(s)	148, 359, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	3 cut(s)	138, 576, 726
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	80, 643
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	56, 269, 286, 560
BtsIMutI	CAGTG	2 cut(s)	199, 251
Cac8I	GCNNGC	2 cut(s)	8, 465
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	5 cut(s)	135, 445, 573, 636, 723
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	3 cut(s)	150, 361, 744
DpnII	GATC	3 cut(s)	148, 359, 742
Ecl136II	GAGCTC	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	12
Esp3I	CGTCTC	2 cut(s)	73, 201
FaeI	CATG	5 cut(s)	138, 448, 576, 639, 726
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	134, 444, 572, 635, 722
FauI	CCCGC	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	94, 657
FokI	GGATG	4 cut(s)	43, 256, 273, 547
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	94, 657
FspBI	CTAG	2 cut(s)	281, 309
GluI	GCNGC	2 cut(s)	94, 657
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	232, 422
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	138, 448, 576, 639, 726
HinfI	GANTC	5 cut(s)	221, 226, 318, 425, 680
HpaII	CCGG	2 cut(s)	232, 422
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	103, 547
Hpy188I	TCNGA	8 cut(s)	52, 178, 206, 323, 334, 374, 384, 489
Hpy188III	TCNNGA	4 cut(s)	146, 214, 590, 689
Hpy8I	GTNNAC	2 cut(s)	103, 547
HpyAV	CCTTC	4 cut(s)	29, 155, 389, 596
HpyCH4IV	ACGT	2 cut(s)	210, 670
HpyCH4V	TGCA	2 cut(s)	463, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	210, 670
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	138, 448, 576, 639, 726
Kzo9I	GATC	3 cut(s)	148, 359, 742
Lsp1109I	GCAGC	2 cut(s)	80, 643
MaeI	CTAG	2 cut(s)	281, 309
MaeII	ACGT	2 cut(s)	210, 670
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	150, 361, 744
MboI	GATC	3 cut(s)	148, 359, 742
MboII	GAAGA	2 cut(s)	14, 17
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	12, 559
MluCI	AATT	4 cut(s)	86, 128, 694, 702
MlyI	GAGTC	2 cut(s)	215, 419
MmeI	TCCRAC	3 cut(s)	136, 352, 387
MnlI	CCTC	4 cut(s)	48, 133, 368, 489
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	3 cut(s)	291, 634, 721
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	2 cut(s)	232, 422
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	148, 359, 742
NlaIII	CATG	5 cut(s)	138, 448, 576, 639, 726
NlaIV	GGNNCC	3 cut(s)	267, 411, 558
NspI	RCATGY	3 cut(s)	138, 576, 726
PaeR7I	CTCGAG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	226, 318, 680
PkrI	GCNGC	2 cut(s)	95, 658
PleI	GAGTC	2 cut(s)	215, 419
PpsI	GAGTC	2 cut(s)	215, 419
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	267, 411, 558
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	291, 634, 721
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	94, 657
Sau3AI	GATC	3 cut(s)	148, 359, 742
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	215, 419
SduI	GDGCHC	2 cut(s)	12, 559
SetI	ASST	9 cut(s)	12, 21, 95, 144, 166, 213, 286, 658, 673
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	291, 634, 721
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	86, 128, 694, 702
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	3 cut(s)	273, 419, 481
SspMI	CTAG	2 cut(s)	281, 309
SstI	GAGCTC	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	378
TaiI	ACGT	2 cut(s)	213, 673
TaqI	TCGA	3 cut(s)	12, 224, 428
TasI	AATT	4 cut(s)	86, 128, 694, 702
TfiI	GAWTC	3 cut(s)	226, 318, 680
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	199, 258
TseI	GCWGC	2 cut(s)	93, 656
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	199, 258
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	3 cut(s)	138, 576, 726
XhoI	CTCGAG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	281, 309
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.