Rmu_sc0000571.1_g000026

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000571.1
OG0007755
Physical Location & Seq
Reverse (-)
117572 .. 118517
946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
atggcaacagcgccggtgaagccgccgctgcacaacttcccgctatcgttcttgaaatgggggagcaagaaccacaccaacaccaaccaccgctaccgccgccccgtctccgccgagcccgaaccgtccgacgattccgagcagccgccgcagcaccaccacggcaatcgcgtcggatcccgcaccgcgcgccaccgcttctcgctcacttcctgctccgagaagcttcccaggtcgcagaattccgagaaagagagcgaggacagcgacgacgacggtaaggccgcggtcgccaccgccgcggcggcggaggaggctgaggttcagaagccgtggaatctgaggccgaggcgagcaccgacggcgatgacttcgaaggcgaataatactactactgcaaacggcgagctgcatgagccggagggtccgaacccgaacccgaacccgaagcagggcgagcagccggcgccgaagtcgatgaggctgaggggtttggctgaaggtccgagcatggagaagaagaaggagaagaggaagttctggatcgctttgtctaaggatgaaattgaagaggacatattcatcatgaccgggtccagacccgcccggcggcccaagaagcggcccaagaatgtccagaaacagctcgataattgttttccgggtttatggctcgtggggtttaccgctgatgcttatcggggtgctgattctccgactaagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

9.64

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 184 - 233 4.8e-26 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 466
AccII CGCG 5 cut(s) 171, 188, 190, 287, 302
AclWI GGATC 3 cut(s) 171, 184, 551
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 467
AfiI CCNNNNNNNGG 4 cut(s) 451, 452, 609, 621
AgsI TTSAA 2 cut(s) 55, 569
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 3 cut(s) 226, 409, 646
AluI AGCT 3 cut(s) 226, 409, 646
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 171, 184, 551
AoxI GGCC 4 cut(s) 282, 344, 611, 623
ApeKI GCWGC 5 cut(s) 28, 142, 151, 409, 460
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 4 cut(s) 13, 190, 192, 469
AspS9I GGNCC 5 cut(s) 425, 503, 594, 612, 624
AsuC2I CCSGG 3 cut(s) 592, 607, 663
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 3 cut(s) 425, 503, 594
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 2 cut(s) 318, 485
BbvI GCAGC 5 cut(s) 15, 154, 163, 396, 472
BceAI ACGGC 4 cut(s) 178, 316, 378, 418
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 3 cut(s) 592, 607, 663
BcoDI GTCTC 1 cut(s) 112
BfoI RGCGCY 2 cut(s) 14, 470
BglI GCCNNNNNGGC 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 232, 592, 607, 663
Bme18I GGWCC 3 cut(s) 425, 503, 594
BmgT120I GGNCC 5 cut(s) 425, 503, 594, 612, 624
BmiI GGNNCC 4 cut(s) 178, 426, 468, 595
BmrFI CCNGG 4 cut(s) 232, 592, 607, 663
BmsI GCATC 1 cut(s) 682
Bpu10I CCTNAGC 2 cut(s) 318, 485
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 3 cut(s) 592, 607, 663
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 451, 452, 609, 621
Bse118I RCCGGY 2 cut(s) 13, 463
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
BseGI GGATG 1 cut(s) 565
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 4 cut(s) 451, 452, 609, 621
BseMII CTCAG 3 cut(s) 309, 332, 476
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 15, 154, 163, 396, 472
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 5 cut(s) 171, 188, 190, 287, 302
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 4 cut(s) 284, 346, 613, 625
BshNI GGYRCC 1 cut(s) 466
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 6 cut(s) 14, 419, 464, 591, 607, 662
BslI CCNNNNNNNGG 4 cut(s) 451, 452, 609, 621
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 4 cut(s) 284, 346, 613, 625
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 120, 358
Bsp143I GATC 2 cut(s) 176, 543
BspANI GGCC 4 cut(s) 284, 346, 613, 625
BspCNI CTCAG 3 cut(s) 310, 333, 477
BspFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 4 cut(s) 178, 426, 468, 595
BspPI GGATC 3 cut(s) 171, 184, 551
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 13, 463
BssAI RCCGGY 2 cut(s) 13, 463
BssECI CCNNGG 6 cut(s) 160, 230, 285, 300, 332, 347
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 2 cut(s) 176, 543
BssNI GRCGYC 1 cut(s) 467
BssSI CACGAG 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 126, 278
Bst6I CTCTTC 2 cut(s) 524, 564
BstACI GRCGYC 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 190, 354, 407, 458, 465
BstDEI CTNAG 5 cut(s) 318, 341, 485, 555, 720
BstDSI CCRYGG 4 cut(s) 160, 285, 300, 332
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstH2I RGCGCY 2 cut(s) 14, 470
BstHHI GCGC 4 cut(s) 13, 190, 192, 469
BstKTI GATC 2 cut(s) 179, 546
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 176, 543
BstMCI CGRYCG 1 cut(s) 291
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 230, 590, 605, 661
BstUI CGCG 5 cut(s) 171, 188, 190, 287, 302
BstV1I GCAGC 5 cut(s) 15, 154, 163, 396, 472
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 4 cut(s) 284, 346, 613, 625
BtgI CCRYGG 4 cut(s) 160, 285, 300, 332
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 565
Cac8I GCNNGC 5 cut(s) 190, 354, 407, 458, 465
CciI TCATGA 1 cut(s) 585
CfoI GCGC 4 cut(s) 13, 190, 192, 469
Cfr10I RCCGGY 2 cut(s) 13, 463
Cfr13I GGNCC 5 cut(s) 425, 503, 594, 612, 624
Cfr42I CCGCGG 2 cut(s) 288, 303
CseI GACGC 1 cut(s) 160
CviAII CATG 3 cut(s) 413, 511, 586
DdeI CTNAG 5 cut(s) 318, 341, 485, 555, 720
DinI GGCGCC 1 cut(s) 468
DpnI GATC 2 cut(s) 178, 545
DpnII GATC 2 cut(s) 176, 543
Eam1104I CTCTTC 2 cut(s) 524, 564
EarI CTCTTC 2 cut(s) 524, 564
EciI GGCGGA 2 cut(s) 100, 323
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 3 cut(s) 425, 503, 594
Eco57I CTGAAG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 3 cut(s) 416, 514, 589
FaiI YATR 5 cut(s) 414, 512, 578, 587, 670
FatI CATG 3 cut(s) 412, 510, 585
FauI CCCGC 3 cut(s) 48, 188, 610
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 4 cut(s) 12, 189, 191, 468
HaeII RGCGCY 2 cut(s) 14, 470
HaeIII GGCC 4 cut(s) 284, 346, 613, 625
HapII CCGG 6 cut(s) 14, 419, 464, 591, 607, 662
HgaI GACGC 1 cut(s) 160
HhaI GCGC 4 cut(s) 13, 190, 192, 469
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 3 cut(s) 416, 514, 589
Hin6I GCGC 4 cut(s) 11, 188, 190, 467
HinP1I GCGC 4 cut(s) 11, 188, 190, 467
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 134, 337, 710
HpaII CCGG 6 cut(s) 14, 419, 464, 591, 607, 662
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 684
Hpy188III TCNNGA 5 cut(s) 52, 541, 586, 597, 637
Hpy8I GTNNAC 1 cut(s) 684
Hpy99I CGWCG 6 cut(s) 134, 176, 272, 275, 278, 364
HpyAV CCTTC 3 cut(s) 370, 494, 517
HpyCH4III ACNGT 2 cut(s) 126, 278
HpyCH4V TGCA 3 cut(s) 31, 398, 412
HpyF3I CTNAG 5 cut(s) 318, 341, 485, 555, 720
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 3 cut(s) 416, 514, 589
HspAI GCGC 4 cut(s) 11, 188, 190, 467
KasI GGCGCC 1 cut(s) 466
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
KspI CCGCGG 2 cut(s) 288, 303
Kzo9I GATC 2 cut(s) 176, 543
LmnI GCTCC 2 cut(s) 63, 221
Lsp1109I GCAGC 5 cut(s) 15, 154, 163, 396, 472
LweI GCATC 1 cut(s) 682
MalI GATC 2 cut(s) 178, 545
MboI GATC 2 cut(s) 176, 543
MboII GAAGA 4 cut(s) 529, 532, 541, 581
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 120, 358
MluCI AATT 3 cut(s) 241, 564, 652
Mly113I GGCGCC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 153, 154
MroNI GCCGGC 1 cut(s) 463
MspA1I CMGCKG 4 cut(s) 28, 287, 302, 689
MspI CCGG 6 cut(s) 14, 419, 464, 591, 607, 662
MspR9I CCNGG 4 cut(s) 232, 592, 607, 663
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 5 cut(s) 171, 188, 190, 287, 302
NaeI GCCGGC 1 cut(s) 465
NarI GGCGCC 1 cut(s) 467
NciI CCSGG 3 cut(s) 592, 607, 663
NdeII GATC 2 cut(s) 176, 543
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 3 cut(s) 416, 514, 589
NlaIV GGNNCC 4 cut(s) 178, 426, 468, 595
NmeAIII GCCGAG 2 cut(s) 139, 372
NspV TTCGAA 1 cut(s) 374
PagI TCATGA 1 cut(s) 585
PauI GCGCGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 134, 337, 710
PflFI GACNNNGTC 1 cut(s) 592
PluTI GGCGCC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 4 cut(s) 178, 426, 468, 595
PspPI GGNCC 5 cut(s) 425, 503, 594, 612, 624
PsuI RGATCY 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 592
PteI GCGCGC 1 cut(s) 188
SacII CCGCGG 2 cut(s) 288, 303
Sau3AI GATC 2 cut(s) 176, 543
Sau96I GGNCC 5 cut(s) 425, 503, 594, 612, 624
ScrFI CCNGG 4 cut(s) 232, 592, 607, 663
SduI GDGCHC 2 cut(s) 120, 358
SetI ASST 6 cut(s) 228, 236, 324, 411, 505, 648
SfaNI GCATC 1 cut(s) 682
SfoI GGCGCC 1 cut(s) 468
Sfr303I CCGCGG 2 cut(s) 288, 303
SfuI TTCGAA 1 cut(s) 374
SgrAI CRCCGGYG 1 cut(s) 13
SgrBI CCGCGG 2 cut(s) 288, 303
SinI GGWCC 3 cut(s) 425, 503, 594
Sse9I AATT 3 cut(s) 241, 564, 652
SspDI GGCGCC 1 cut(s) 466
StyD4I CCNGG 4 cut(s) 230, 590, 605, 661
TaaI ACNGT 2 cut(s) 126, 278
TaqI TCGA 3 cut(s) 374, 476, 648
TasI AATT 3 cut(s) 241, 564, 652
TfiI GAWTC 3 cut(s) 134, 337, 710
TseI GCWGC 5 cut(s) 28, 142, 151, 409, 460
TspDTI ATGAA 2 cut(s) 571, 576
Tth111I GACNNNGTC 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 425, 503, 594
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.