Rmu_sc0000573.1_g000032

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000573.1
OG0006430
Physical Location & Seq
Reverse (-)
130107 .. 130448
342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
atggctcctcccagtattctcagtcctccggagttccacaaaccctcacccaccaccaccgcttcgccgccaccccaacccaaatccaaacccatcaccggcgaacccttcgtggacctgatggtggtgaatttcaacgacgtcggaaccaagcacgtcctcccaatgggcctgacggagaacgactctgccatgtttctctccaccggcaacccctgcctcgatctcttcttccacatcatcccgaacactccaaacgactacctcaccgatgggactccaatggtggccagtgtcgtgtcattggcttcttcctttatcgcagtcactttatcttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

113

Amino Acids

11.98

Weight (kDa)

4.72

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 2 cut(s) 60, 68
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 98, 124, 166
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 2 cut(s) 169, 288
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 115, 169
AsuHPI GGTGA 4 cut(s) 39, 88, 139, 259
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 290
BccI CCATC 3 cut(s) 101, 115, 266
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 115, 169
BmiI GGNNCC 2 cut(s) 6, 148
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BsaHI GRCGYC 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 124, 166
Bse118I RCCGGY 2 cut(s) 98, 206
Bse1I ACTGG 2 cut(s) 12, 291
BseAI TCCGGA 1 cut(s) 28
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 98, 124, 166
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 12, 291
BshFI GGCC 2 cut(s) 171, 290
BsiSI CCGG 3 cut(s) 29, 99, 207
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 98, 124, 166
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 171, 290
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 2 cut(s) 60, 68
BspANI GGCC 2 cut(s) 171, 290
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 6, 148
BsrFI RCCGGY 2 cut(s) 98, 206
BsrI ACTGG 2 cut(s) 12, 291
BssAI RCCGGY 2 cut(s) 98, 206
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 171, 290
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 98, 206
Cfr13I GGNCC 2 cut(s) 115, 169
CviAII CATG 1 cut(s) 193
CviJI RGCY 4 cut(s) 5, 171, 290, 308
CviKI_1 RGCY 4 cut(s) 5, 171, 290, 308
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 115
FaeI CATG 1 cut(s) 196
FaiI YATR 1 cut(s) 194
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 2 cut(s) 171, 290
HapII CCGG 3 cut(s) 29, 99, 207
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 185, 277
HpaII CCGG 3 cut(s) 29, 99, 207
HphI GGTGA 4 cut(s) 39, 88, 139, 259
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 29, 244, 339
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 2 cut(s) 143, 146
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 141, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 2 cut(s) 141, 156
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 25, 42, 112, 131, 185, 220, 229, 304
MaeII ACGT 2 cut(s) 141, 156
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 4 cut(s) 220, 223, 303, 327
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 1 cut(s) 130
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 179, 271
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 6 cut(s) 18, 36, 55, 170, 230, 275
Mox20I TGGCCA 1 cut(s) 290
MroI TCCGGA 1 cut(s) 28
MscI TGGCCA 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 3 cut(s) 29, 99, 207
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 6, 148
NmuCI GTSAC 1 cut(s) 325
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 179, 271
PpsI GAGTC 2 cut(s) 179, 271
PspN4I GGNNCC 2 cut(s) 6, 148
PspPI GGNCC 2 cut(s) 115, 169
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 115, 169
SchI GAGTC 2 cut(s) 179, 271
SetI ASST 4 cut(s) 120, 144, 159, 267
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 130
SsiI CCGC 2 cut(s) 60, 68
TaiI ACGT 2 cut(s) 144, 159
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 130
TauI GCSGC 1 cut(s) 70
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 130
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.